BAC Information

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BAC

Clone NameB6Ng01-016P16
Chromosome5 (Build37)
Map Location 69,288,668 - 69,431,383
singlet/doubletdoublet
Overlap geneLOC666996
Upstream geneEG330097, EG666977, AY616753
Downstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P16.bB6Ng01-016P16.g
ACCDH850791DH850792
length1,1941,145
definitionDH850791|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P16, 5' end.DH850792|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,430,159 - 69,431,383)(69,288,668 - 69,289,818)
sequence
gaattccaagagagtttcctgtattattaagccaatgagccaaggaacgt
ctattccctaaacaattagctctcgtaaatgaagtgtaggaagaaaggca
atccaggaattcattatttgttcttcctgggtgcagacattaactagcat
taaggctccttgagttgtgacatatgaggtgtaattcaaaaggaagagac
tgatggcttctagtcaccccaaaaaatcaatcacagccctttatagttac
accctcacactcatttctcttcatggaggaatgaatttgtatcctggaag
taaaaaactgtggaccctgtaggttttatattttccccatactattctca
acaatttataactgccatttgtaattctcagttatcaatatcttttatta
cccattgtttgacttatatgtttttacagaagtatccagatgccacaaaa
gtgaaaaccagtcatctctcaaatagtgtaattctacttcagtagcttat
gtcggaacctatggatacagtaatgattcagtctattgtgtgtactttgc
ttcgcgtattacatctgagctgtcttcagtttccattgcttgactcagcc
aggaaaattacttttagccaagaaaatggagtactttctaacagtttagg
aagtggcagttagttttttaatatgtaaatattacaatgtaaggccgaga
tgttttataaaacacagcctcaagaatcttaagtgaaaatactacatctg
ctacttgttagaatcttgaaattatgaaattaaaaaagtagatatatgag
gctggagaggtagctcagtgctttagaacactggctgcttctccagataa
ccaggcttcagttactagcacccacctggaaaactcactacagctgtaac
tccagtttctaggagatcgatcccttatcctcttttgctctcctgcctca
gctctaaacagtctgatggtgcacatatatacactcaagtgaagtaccta
tacccataaaataaaataaattaaaagtaaaatactattactgacatgat
tactgaacatgtcattatatattttatcttgaatatagttttaagataca
tgaaaatttctggtctacaagttaaatctaagaactgattgatgacattg
actcacatttttgagtattgaacggtactgaacctcaatttgtc
gaattcatcagtgtgattcagagttcctctcatgaggagttagtactgac
catctggaagtagaaatggttcaataaagatgttgacaatctgtgctcat
tagccattccattcaatattgcacattcctcttttaaaaccacgcctcag
attgtttcaagcatctattacaaaatcagttcagtattttctcttttata
ctatgttatggagattcaatgaggttcttctagcttttagtatttaaatt
tttaaaaagccatgtaaaatcatgagtgagtatttatttatttgagaatt
ttagattttttcctaggaggatatacattgaagttaacagataccttgtt
taatggtgtcaaaatataagggaagtattttaagcaatttaaagcaacac
aatagaatgaatgctacagcaaaatatggtgacctgcctttaagaaatat
acatttttctcagaaaactgagaaggactggagtaaatatgaagtataaa
ttcagtagactaggatctcatcatttaagatcagtaagacaaggaaaaaa
aaaagaaacacgagcatttgagcaatgaaaaattataggatgtgttttaa
atgttgtttagggaaatggacaaataataaattttaagattaggtacttt
atgttcatttgtcatatgccttagactagacattgattggtttatacagt
tatgacacaatttttataaagcctactgtcatcaacatggcacctaatgt
gatagtaaattttaaaaagaaattataagtatgggtacaatggtaatgac
agctttccatttttaatcttttcggttcaatagttaaagacaatttcaat
aactgtcttcagagaatcaacttctctcaaaaatttttattgttttctgt
attggaaaaacatattttcctatatcaggaaactcatttgcaatactatg
tataattctttgcttgacttatcagggaatgtctatttgaaatatggatt
tcttttataatgtacagcaacatgtatttcaatggatatcatctttattt
taaaaatatcttatctttccaggggtaatctatcatctttttatgtcaac
tcgaagagctagcctaggctaagatgctccttctccttaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69430159_69431383
seq2: B6Ng01-016P16.b_46_1239 (reverse)

seq1  GACAAATATGAGGTCTTCAGTAACTTCTGGTTCAAAATTCACTCAAAATG  50
      ||||||| |||||  ||||||| |     |||||| | |||   ||||||
seq2  GACAAAT-TGAGG--TTCAGTACC-----GTTCAATACTCA---AAAATG  39

seq1  TAGTTCATATGTCTATCAAATTCAGTTCTTATGTATTTATACTTGTTAGC  100
      |   ||| ||||| |||||  ||||||||||   ||||| ||||| ||| 
seq2  TGAGTCA-ATGTC-ATCAA--TCAGTTCTTA--GATTTA-ACTTG-TAG-  80

seq1  ACCAGAAATTTTTCATGTATCTTATAAAATTAATATTC-AGATAAAATAT  149
      |||||||| |||||||||||||  ||||| | |||||| |||||||||||
seq2  ACCAGAAA-TTTTCATGTATCT--TAAAACT-ATATTCAAGATAAAATAT  126

seq1  ATAATTGACATGTTCAGTAATCATGTTCAGTAATAGGTATTTTTACTTTT  199
      |||| |||||||||||||||||||| ||||||||| ||| |||||| |||
seq2  ATAA-TGACATGTTCAGTAATCATG-TCAGTAATA-GTA-TTTTAC-TTT  171

seq1  TAATTTTATTTTTATTTTATGGGTATAGGTACTTCACTTGAGTGTATATA  249
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TAATTT--ATTTTATTTTATGGGTATAGGTACTTCACTTGAGTGTATATA  219

seq1  TGTGCACCATCAGACTGTTTAGAGCCTGAGGCAGGAGAGCAAAAGAGGAT  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGCACCATCAGACTGTTTAGAG-CTGAGGCAGGAGAGCAAAAGAGGAT  268

seq1  AAGGGATCGATCTCCTAG-AACTGGAGTTACAGCCTGTAGTGAGTTTTCC  348
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAGGGATCGATCTCCTAGAAACTGGAGTTACAG-CTGTAGTGAGTTTTCC  317

seq1  AGGTGGGTGCTAGTAACTGAAGCCTGGTTATCTGGAGAAGCAGCCAGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTGCTAGTAACTGAAGCCTGGTTATCTGGAGAAGCAGCCAGTGT  367

seq1  TCTAAAGCACTGAGCTACCTCTCCAGCCTCATATATCTACTTTTTTAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCACTGAGCTACCTCTCCAGCCTCATATATCTACTTTTTTAATT  417

seq1  TCATAATTTCAAGATTCTAACAAGTAGCAGATGTAGTATTTTCACTTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTCAAGATTCTAACAAGTAGCAGATGTAGTATTTTCACTTAAG  467

seq1  ATTCTTGAGGCTGTGTTTTATAAAACATCTCGGCCTTACATTGTAATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAGGCTGTGTTTTATAAAACATCTCGGCCTTACATTGTAATATT  517

seq1  TACATATTAAAAAACTAACTGCCACTTCCTAAACTGTTAGAAAGTACTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTAAAAAACTAACTGCCACTTCCTAAACTGTTAGAAAGTACTCC  567

seq1  ATTTTCTTGGCTAAAAGTAATTTTCCTGGCTGAGTCAAGCAATGGAAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGGCTAAAAGTAATTTTCCTGGCTGAGTCAAGCAATGGAAACT  617

seq1  GAAGACAGCTCAGATGTAATACGCGAAGCAAAGTACACACAATAGACTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCTCAGATGTAATACGCGAAGCAAAGTACACACAATAGACTGA  667

seq1  ATCATTACTGTATCCATAGGTTCCGACATAAGCTACTGAAGTAGAATTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACTGTATCCATAGGTTCCGACATAAGCTACTGAAGTAGAATTAC  717

seq1  ACTATTTGAGAGATGACTGGTTTTCACTTTTGTGGCATCTGGATACTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGAGAGATGACTGGTTTTCACTTTTGTGGCATCTGGATACTTCT  767

seq1  GTAAAAACATATAAGTCAAACAATGGGTAATAAAAGATATTGATAACTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACATATAAGTCAAACAATGGGTAATAAAAGATATTGATAACTGA  817

seq1  GAATTACAAATGGCAGTTATAAATTGTTGAGAATAGTATGGGGAAAATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAAATGGCAGTTATAAATTGTTGAGAATAGTATGGGGAAAATAT  867

seq1  AAAACCTACAGGGTCCACAGTTTTTTACTTCCAGGATACAAATTCATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACAGGGTCCACAGTTTTTTACTTCCAGGATACAAATTCATTCC  917

seq1  TCCATGAAGAGAAATGAGTGTGAGGGTGTAACTATAAAGGGCTGTGATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGAGAAATGAGTGTGAGGGTGTAACTATAAAGGGCTGTGATTG  967

seq1  ATTTTTTGGGGTGACTAGAAGCCATCAGTCTCTTCCTTTTGAATTACACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGGGTGACTAGAAGCCATCAGTCTCTTCCTTTTGAATTACACC  1017

seq1  TCATATGTCACAACTCAAGGAGCCTTAATGCTAGTTAATGTCTGCACCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTCACAACTCAAGGAGCCTTAATGCTAGTTAATGTCTGCACCCA  1067

seq1  GGAAGAACAAATAATGAATTCCTGGATTGCCTTTCTTCCTACACTTCATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAAATAATGAATTCCTGGATTGCCTTTCTTCCTACACTTCATT  1117

seq1  TACGAGAGCTAATTGTTTAGGGAATAGACGTTCCTTGGCTCATTGGCTTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGAGCTAATTGTTTAGGGAATAGACGTTCCTTGGCTCATTGGCTTA  1167

seq1  ATAATACAGGAAACTCTCTTGGAATTC  1225
      |||||||||||||||||||||||||||
seq2  ATAATACAGGAAACTCTCTTGGAATTC  1194

seq1: chr5_69288668_69289818
seq2: B6Ng01-016P16.g_71_1215

seq1  GAATTCATCAGTGTGATTCAGAGTTCCTCTCATGAGGAGTTAGTACTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGTGATTCAGAGTTCCTCTCATGAGGAGTTAGTACTGAC  50

seq1  CATCTGGAAGTAGAAATGGTTCAATAAAGATGTTGACAATCTGTGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAAGTAGAAATGGTTCAATAAAGATGTTGACAATCTGTGCTCAT  100

seq1  TAGCCATTCCATTCAATATTGCACATTCCTCTTTTAAAACCACGCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTCCATTCAATATTGCACATTCCTCTTTTAAAACCACGCCTCAG  150

seq1  ATTGTTTCAAGCATCTATTACAAAATCAGTTCAGTATTTTCTCTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAAGCATCTATTACAAAATCAGTTCAGTATTTTCTCTTTTATA  200

seq1  CTATGTTATGGAGATTCAATGAGGTTCTTCTAGCTTTTAGTATTTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTATGGAGATTCAATGAGGTTCTTCTAGCTTTTAGTATTTAAATT  250

seq1  TTTAAAAAGCCATGTAAAATCATGAGTGAGTATTTATTTATTTGAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGCCATGTAAAATCATGAGTGAGTATTTATTTATTTGAGAATT  300

seq1  TTAGATTTTTTCCTAGGAGGATATACATTGAAGTTAACAGATACCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTTCCTAGGAGGATATACATTGAAGTTAACAGATACCTTGTT  350

seq1  TAATGGTGTCAAAATATAAGGGAAGTATTTTAAGCAATTTAAAGCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGTCAAAATATAAGGGAAGTATTTTAAGCAATTTAAAGCAACAC  400

seq1  AATAGAATGAATGCTACAGCAAAATATGGTGACCTGCCTTTAAGAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATGAATGCTACAGCAAAATATGGTGACCTGCCTTTAAGAAATAT  450

seq1  ACATTTTTCTCAGAAAACTGAGAAGGACTGGAGTAAATATGAAGTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTCAGAAAACTGAGAAGGACTGGAGTAAATATGAAGTATAAA  500

seq1  TTCAGTAGACTAGGATCTCATCATTTAAGATCAGTAAGACAAGGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGACTAGGATCTCATCATTTAAGATCAGTAAGACAAGGAAAAAA  550

seq1  AAAAGAAACACGAGCATTTGAGCAATGAAAAATTATAGGATGTGTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACACGAGCATTTGAGCAATGAAAAATTATAGGATGTGTTTTAA  600

seq1  ATGTTGTTTAGGGAAATGGACAAATAATAAATTTTAAGATTAGGTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTAGGGAAATGGACAAATAATAAATTTTAAGATTAGGTACTTT  650

seq1  ATGTTCATTTGTCATATGCCTTAGACTAGACATTGATTGGTTTATACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTTGTCATATGCCTTAGACTAGACATTGATTGGTTTATACAGT  700

seq1  TATGACACAATTTTTATAAAGCCTACTGTCATCAACATGGCACCTAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAATTTTTATAAAGCCTACTGTCATCAACATGGCACCTAATGT  750

seq1  GATAGTAAATTTTAAAAAGAAATTATAAGTATGGGTACAATGGTAATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAAATTTTAAAAAGAAATTATAAGTATGGGTACAATGGTAATGAC  800

seq1  AGC-TTCCATTTTTAATCTTTTCGGTTCAATAGTTAAAGACAATTTCAAT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCATTTTTAATCTTTTCGGTTCAATAGTTAAAGACAATTTCAAT  850

seq1  AACTGTCTTCAGAGAATCAACTTCTCTCAAAAA-TATTATTGTTTTCTGT  898
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  AACTGTCTTCAGAGAATCAACTTCTCTCAAAAATTTTTATTGTTTTCTGT  900

seq1  ATTGAAAAAACATAATTTCCTATATTCAGGAAACTCATTTGCAATAACTA  948
      |||| ||||||||| ||||||||| |||||||||||||||||||| ||||
seq2  ATTGGAAAAACATATTTTCCTATA-TCAGGAAACTCATTTGCAAT-ACTA  948

seq1  TGTAT-ATTCTATGCTTGACTAATCAGGGAATGTCATATTGAAATTATGG  997
      ||||| ||||| ||||||||| ||||||||||||| ||||  || |||||
seq2  TGTATAATTCTTTGCTTGACTTATCAGGGAATGTC-TATTTGAAATATGG  997

seq1  ATTTCTTTTATAATGTACAGCAACATGTAATTTTCAAATGATATCATCTT  1047
      |||||||||||||||||||||||||||||  ||||||  |||||||||||
seq2  ATTTCTTTTATAATGTACAGCAACATGTA--TTTCAATGGATATCATCTT  1045

seq1  ATTTTTTAAAATAATCTTATCTTTCCAGGGTGAAATTTATCATCTTTTTA  1097
       | ||||||||  ||||||||||||||||| | ||| |||||||||||||
seq2  -TATTTTAAAAATATCTTATCTTTCCAGGG-GTAATCTATCATCTTTTTA  1093

seq1  TGTCAAACTCAGAGAGCTAGGCTAGCATAAGATGCTACTTCTCCTTAAAT  1147
      |||| |||||  |||||||| ||||  ||||||||| ||||||||| |||
seq2  TGTC-AACTCGAAGAGCTAGCCTAGGCTAAGATGCTCCTTCTCCTT-AAT  1141

seq1  TTTA  1151
      ||||
seq2  TTTA  1145