BAC Information

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BAC

Clone NameB6Ng01-017A13
Chromosome5 (Build37)
Map Location 73,912,768 - 74,055,068
singlet/doubletdoublet
Overlap geneDcun1d4, BC031901, Sgcb, Spata18
Upstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A13.bB6Ng01-017A13.g
ACCDH850829DH850830
length1,0611,076
definitionDH850829|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A13, 5' end.DH850830|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,054,030 - 74,055,068)(73,912,768 - 73,913,846)
sequence
gaattctttttgcactttgagcgcagcttgagaccatggaagccaggata
aaatattatgatttcaagaggtgagcttgggcatcaggctggctagagtt
ggattggtgatggttggtttttaaaattctctttttctacaaatgtgtga
gcactcgagcatgtccccatgcatgtgtggaggtcacaggacaacttgtg
aaagtcatttctgtctttctacaatgatcccaggtgtggagcttaggtta
tcgggcttgtcagaaaacgctctctaaccactgagccatctcgccggtcc
catgacacttaaatttaacgtcaacttgatagactgagaagcatccgagg
tatcgctcttttaggagcttgtctgcgaaggtgcttccggagtccatcaa
ctgagagagaaagatgctctctaatgcgggcaccaccaccaaacactcct
gaggaacagaggaaaaggaaaaaagccagcaccacaccaatattcctctt
tttctgcttcggtctcccaggatatgagcaagcagtgttctgctcccaca
ggcgggaggtgttcctgctacactgattccctgccacggtggaacgcact
tccttgcctccgaaccaccttgcctccatgacattgttttttgttagcta
tttggtcacagcaaggagaaaagtagtttcacgaatccacatatcccgtg
gatctgtgccacatatttccatcactttctaagcacaatgttctaaatag
ttttggtccgaattagtatccagggcccctcttgtctttcgatcaagcca
catcctctttctctgactagagaattttacatttagtgagtaaagttgag
ctacacaacatcagcggaagagcagttggtttctctatggagctgccctg
gtataggaaggcatcctggagtttcacagaggggtccgtgacatctctga
ccttacccttcttgaaaatgtttaagcctgttcactttcccagcagtccc
ctccactctaagactgaaagtcttttcagtgaaaagaatatggagggata
gaaacattttt
gaattcttaatttaatgctgccataccagagaacttcaagtttattgatg
agtaacaggctctgagctaagagaggagtgcttttatccctttctctttg
agcccttagcttgtgtaggagaacgagaacttggggtttgtagttttgat
aacttgatattttccaccagcagcatctagaggtagtagatgtcagcatt
tctgtcagaggtctgcgcaggtcactctcaagtaaatgttcaggtaaatt
cctaagagaattatttaagatcttacgttgttatacaaatgaaaattata
cctgtagatattaatatacctgggtatatgtgataggttaaactgtgtac
atgttttgtacctaactcacagttggaaacccctgcccctgtctccctat
gtgggaagctctcctcgggcatcacaggatgggggactccagcgttgcag
tactgctctgtcactcagtgtccccaaccctgctgcctagcaggcttaca
gtggagaactaggagccagggatctgctctctctcctgaggcgaaagggt
tgtggtaatacaggagtcaccagagagatggtttttttttcagccttgca
cctggattaattttgttctagaatattgggcatgagtcgatgtttctctt
catttgtgtaaggttttctggcatcattactggcaaattcctccttagcc
tgtgcctgtgcttaactcatgacacagaaatcagaacttgatagagagat
aggaataattaatgtttttaaaggatcatttttaatgcctaatttcttgc
catattttacttaaatctttctatactgaattcctagggttgtgaggcag
aggaaagtttattaataactaattctattttatttctaattgattattga
taagatagttgtattaggtacttactgtttaattctttattaagtatggg
ttttatttcagtactagttatgaaactgctattgcttaaaatgcaggaag
tagaatgtttaaagtatactatgccttgtggaatggacagctgatttagg
cccaagtgaaatttactgctacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74054030_74055068
seq2: B6Ng01-017A13.b_34_1093 (reverse)

seq1  AAAATG-TTCTAT-CCTTCATTATCTTTTCACTG-AAAGACTTTCAGTC-  46
      |||||| |||||| ||| |||  ||||||||||| |||||||||||||| 
seq2  AAAATGTTTCTATCCCTCCATATTCTTTTCACTGAAAAGACTTTCAGTCT  50

seq1  TAGAGGTGAGGGG-CTGCTGG--AATGGAACAGGC-TCAACA-TTTCAAG  91
      |||||  |||||| |||||||  ||  |||||||| | |||| |||||||
seq2  TAGAGTGGAGGGGACTGCTGGGAAAGTGAACAGGCTTAAACATTTTCAAG  100

seq1  AA-GGTAA-GTCAGAGATGTCACGGA-CCCTCTGTG-AACT-CAGGATGC  136
      || ||||| ||||||||||||||||| ||||||||| |||| ||||||||
seq2  AAGGGTAAGGTCAGAGATGTCACGGACCCCTCTGTGAAACTCCAGGATGC  150

seq1  CTTCCTATACCAGGGCAGCTCCATAGAGAA--CCACTGCTCTTCCGCTGA  184
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  CTTCCTATACCAGGGCAGCTCCATAGAGAAACCAACTGCTCTTCCGCTGA  200

seq1  TGTTGTGTAGCTCACTTTTACTCACTAAATGT-AAATTCTCTAGTCAGAG  233
      ||||||||||||||  |||||||||||||||| |||||||||||||||||
seq2  TGTTGTGTAGCTCAACTTTACTCACTAAATGTAAAATTCTCTAGTCAGAG  250

seq1  AAAGAGGATGTGGCTTGATCG-AAGACAAGA-GGGCCCTGGATACTAATT  281
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGAGGATGTGGCTTGATCGAAAGACAAGAGGGGCCCTGGATACTAATT  300

seq1  CGGACC-AAACTATTTAGAACATTGTGCTTAGAAAGTGATGGAAATATGT  330
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCAAAACTATTTAGAACATTGTGCTTAGAAAGTGATGGAAATATGT  350

seq1  GGCACAGATCCACGGGATATGTGGATTCGTG-AACTACTTTTCTCCTTGC  379
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCACAGATCCACGGGATATGTGGATTCGTGAAACTACTTTTCTCCTTGC  400

seq1  TGTGACCAAATAGCTAACAAAAAACAATGTCATGGAGGCAAGGTGGTTCG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAAATAGCTAACAAAAAACAATGTCATGGAGGCAAGGTGGTTCG  450

seq1  GAGGCAAGGAAGTGCGTTCCACCGTGGCAGGGAATCAGTGTAGCAGGAAC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGGAAGTGCGTTCCACCGTGGCAGGGAATCAGTGTAGCAGGAAC  500

seq1  ACCTCCCGCCTGTGGGAGCAGAACACTGCTTGCTCATATCCTGGGAGACC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGCCTGTGGGAGCAGAACACTGCTTGCTCATATCCTGGGAGACC  550

seq1  GAAGCAGAAAAAGAGGAATATTGGTGTGGTGCTGGCTTTTTTCCTTTTCC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAAAAGAGGAATATTGGTGTGGTGCTGGCTTTTTTCCTTTTCC  600

seq1  TCTGTTCCTCAGGAGTGTTTGGTGGTGGTGCCCGCATTAGAGAGCATCTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTCAGGAGTGTTTGGTGGTGGTGCCCGCATTAGAGAGCATCTT  650

seq1  TCTCTCTCAGTTGATGGACTCCGGAAGCACCTTCGCAGACAAGCTCCTAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCAGTTGATGGACTCCGGAAGCACCTTCGCAGACAAGCTCCTAA  700

seq1  AAGAGCGATACCTCGGATGCTTCTCAGTCTATCAAGTTGACGTTAAATTT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGATACCTCGGATGCTTCTCAGTCTATCAAGTTGACGTTAAATTT  750

seq1  AAGTGTCATGGGACCGGCGAGATGGCTCAGTGGTTAGAGAGCGTTTTCTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCATGGGACCGGCGAGATGGCTCAGTGGTTAGAGAGCGTTTTCTG  800

seq1  ACAAGCCCGATAACCTAAGCTCCACACCTGGGATCATTGTAGAAAGACAG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCGATAACCTAAGCTCCACACCTGGGATCATTGTAGAAAGACAG  850

seq1  AAATGACTTTCACAAGTTGTCCTGTGACCTCCACACATGCATGGGGACAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTTCACAAGTTGTCCTGTGACCTCCACACATGCATGGGGACAT  900

seq1  GCTCGAGTGCTCACACATTTGTAGAAAAAGAGAATTTTAAAAACCAACCA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGTGCTCACACATTTGTAGAAAAAGAGAATTTTAAAAACCAACCA  950

seq1  TCACCAATCCAACTCTAGCCAGCCTGATGCCCAAGCTCACCTCTTGAAAT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATCCAACTCTAGCCAGCCTGATGCCCAAGCTCACCTCTTGAAAT  1000

seq1  CATAATATTTTATCCTGGCTTCCATGGTCTCAAGCTGCGCTCAAAGTGCA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTTATCCTGGCTTCCATGGTCTCAAGCTGCGCTCAAAGTGCA  1050

seq1  AAAAGAATTC  1039
      ||||||||||
seq2  AAAAGAATTC  1060

seq1: chr5_73912768_73913846
seq2: B6Ng01-017A13.g_68_1143

seq1  GAATTCTTAATTTAATGCTGCCATACCAGAGAACTTCAAGTTTATTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTTAATGCTGCCATACCAGAGAACTTCAAGTTTATTGATG  50

seq1  AGTAACAGGCTCTGAGCTAAGAGAGGAGTGCTTTTATCCCTTTCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGCTCTGAGCTAAGAGAGGAGTGCTTTTATCCCTTTCTCTTTG  100

seq1  AGCCCTTAGCTTGTGTAGGAGAACGAGAACTTGGGGTTTGTAGTTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTAGCTTGTGTAGGAGAACGAGAACTTGGGGTTTGTAGTTTTGAT  150

seq1  AACTTGATATTTTCCACCAGCAGCATCTAGAGGTAGTAGATGTCAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATATTTTCCACCAGCAGCATCTAGAGGTAGTAGATGTCAGCATT  200

seq1  TCTGTCAGAGGTCTGCGCAGGTCACTCTCAAGTAAATGTTCAGGTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGAGGTCTGCGCAGGTCACTCTCAAGTAAATGTTCAGGTAAATT  250

seq1  CCTAAGAGAATTATTTAAGATCTTACGTTGTTATACAAATGAAAATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGAATTATTTAAGATCTTACGTTGTTATACAAATGAAAATTATA  300

seq1  CCTGTAGATATTAATATACCTGGGTATATGTGATAGGTTAAACTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGATATTAATATACCTGGGTATATGTGATAGGTTAAACTGTGTAC  350

seq1  ATGTTTTGTACCTAACTCACAGTTGGAAACCCCTGCCCCTGTCTCCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTACCTAACTCACAGTTGGAAACCCCTGCCCCTGTCTCCCTAT  400

seq1  GTGGGAAGCTCTCCTCGGGCATCACAGGATGGGGGACTCCAGCGTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGCTCTCCTCGGGCATCACAGGATGGGGGACTCCAGCGTTGCAG  450

seq1  TACTGCTCTGTCACTCAGTGTCCCCAACCCTGCTGCCTAGCAGGCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCTGTCACTCAGTGTCCCCAACCCTGCTGCCTAGCAGGCTTACA  500

seq1  GTGGAGAACTAGGAGCCAGGGATCTGCTCTCTCTCCTGAGGCGAAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAACTAGGAGCCAGGGATCTGCTCTCTCTCCTGAGGCGAAAGGGT  550

seq1  TGTGGTAATACAGGAGTCACCAGAGAGATGGTTTTTTTTTCAGCCTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAATACAGGAGTCACCAGAGAGATGGTTTTTTTTTCAGCCTTGCA  600

seq1  CCTGGATTAATTTTGTTCTAGAATATTGGGCATGAGTCGATGTTTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTAATTTTGTTCTAGAATATTGGGCATGAGTCGATGTTTCTCTT  650

seq1  CATTTGTGTAAGGTTTTCTGGCATCATTACTGGCAAATTCCTCCTTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTAAGGTTTTCTGGCATCATTACTGGCAAATTCCTCCTTAGCC  700

seq1  TGTGCCTGTGCTTAACTCATGACACAGAAATCAGAACTTGATAGAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTGCTTAACTCATGACACAGAAATCAGAACTTGATAGAGAGAT  750

seq1  AGGAATAATTAATGTTTTTAAAGGATCATTTTTAATGCCTAATTTCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATTAATGTTTTTAAAGGATCATTTTTAATGCCTAATTTCTTGC  800

seq1  CATATTTTACTTAAAATCTTTCTATACTGAATT-CTA-GGTTGTGAGGCA  848
      |||||||||||| |||||||||||||||||||| ||| ||||||||||||
seq2  CATATTTTACTT-AAATCTTTCTATACTGAATTCCTAGGGTTGTGAGGCA  849

seq1  GAGGAAAGTTTATTAAATAACTAA-TCTA-TTTAATTCTAATTGATTATT  896
      |||||||||||||| ||||||||| |||| |||| |||||||||||||||
seq2  GAGGAAAGTTTATT-AATAACTAATTCTATTTTATTTCTAATTGATTATT  898

seq1  GATAAGATAGTTGTATTAGGTACTTACTGTTTAATTCTTTATTAAAGTAT  946
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATAAGATAGTTGTATTAGGTACTTACTGTTTAATTCTTTATT-AAGTAT  947

seq1  TGGGTGTATTTCAGTACTAGTTATGAAACTGCTAATGCTTAAAAATGCAG  996
       || | |||||||||||||||||||||||||||| ||||| |||||||||
seq2  GGGTTTTATTTCAGTACTAGTTATGAAACTGCTATTGCTT-AAAATGCAG  996

seq1  GAAGTAGAATGTTTAAAGTATACTTATGCCTTGGTGGAATGGACAGCTGA  1046
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  GAAGTAGAATGTTTAAAGTATAC-TATGCCTT-GTGGAATGGACAGCTGA  1044

seq1  TTTAGGCCAAAGTGAAAATTACCTGCTACTTGA  1079
      |||||||| |||||||| ||| |||||||||||
seq2  TTTAGGCCCAAGTGAAATTTA-CTGCTACTTGA  1076