BAC Information

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BAC

Clone NameB6Ng01-017O23
Chromosome1 (Build37)5 (Build37)
Map Location 87,588,190 - 87,588,253134,821,060 - 134,821,606
singlet/doubletsingletsinglet
Overlap geneSp100
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneA630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017O23.bB6Ng01-017O23.g
ACCDH851473DH851474
length168541
definitionDH851473|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O23, 5' end.DH851474|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,588,190 - 87,588,253)(134,821,060 - 134,821,606)
sequence
tgggtttggccaagaaatcttgcctcaaagaataaggtggaagagtactg
aaggagattccaaaaatcaacctcgggtgtccataggcaagcacacatgg
gtccattctctctctctctctctctctctctctcctctctctctctctct
ctctctctctctctctgt
ttttttttttttttttttttttggtttttctagacagggtttctctgtat
agccctggctgtcctggaactcactttgtagaccaggttggcctcgaact
cagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtg
ccaccactgcccggcctctacttccttttgtttttattcacatgtacctg
tctgcatgtgtgtgtacatgtgtgcagatgtagggaggaggccagaagaa
ggtgttgggtcccaaggtgtttgtgaatcacctgatgtgggagctgaaaa
tagaactcgggtcctctacatgagcagcaagggcgcttaatctctgagtc
atctctccaggccctcaactccacttcgtacaaggaatcatctactacag
agccttgccccgctctgtgccagccattgctaagagccctgtacagacag
gctgccgacaggtggcgctgttggaggcacggctctatctggtggtgggt
ggtattgtcagacaaatgagcccgctaagcattctcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87588190_87588253
seq2: B6Ng01-017O23.b_161_223 (reverse)

seq1  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-GAGAGAGAGAGAGAG  49

seq1  AGAGAGAGAGAGAA  64
      ||||||||||||||
seq2  AGAGAGAGAGAGAA  63

seq1: chr5_134821060_134821606
seq2: B6Ng01-017O23.g_67_613

seq1  GAATTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCTAGACAGGGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCTAGACAGGGTTTCT  50

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCT  100

seq1  CGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  150

seq1  CGTGTGCCACCACTGCCCGGCCTCTACTTCCTTTTGTTTTTATTCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCCACCACTGCCCGGCCTCTACTTCCTTTTGTTTTTATTCACATG  200

seq1  TACCTGTCTGCATGTGTGTGTACATGTGTGCAGATGTAGGGAGGAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCTGCATGTGTGTGTACATGTGTGCAGATGTAGGGAGGAGGCCA  250

seq1  GAAGAAGGTGTTGGGTCCCAAGGTGTTTGTGAATCACCTGATGTGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTGTTGGGTCCCAAGGTGTTTGTGAATCACCTGATGTGGGAGC  300

seq1  TGAGAATAGAACTCGGGTCCTCTACATGAGCAGCAAGGGCGCTTAATCTC  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGAACTCGGGTCCTCTACATGAGCAGCAAGGGCGCTTAATCTC  350

seq1  TGAGTCATCTCTCCAGGCCCTCAACTCCACTTCGTACAAGGAATCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATCTCTCCAGGCCCTCAACTCCACTTCGTACAAGGAATCATCTA  400

seq1  CTACAGAGCCTTGCCCCGCTCTGTGCCAGCCATTGCTAAGAGCCCTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGCCTTGCCCCGCTCTGTGCCAGCCATTGCTAAGAGCCCTGTAC  450

seq1  AGACAGGCTGCCGACAGGTGGCGCTGTTGGAGGCACGGCTCTATCTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCTGCCGACAGGTGGCGCTGTTGGAGGCACGGCTCTATCTGGTG  500

seq1  GTGGGTGGTATTGTCAGACAAATGAGCCCGCTAAGCATTCTCCTGTG  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGTATTGTCAGACAAATGAGCCCGCTAAGCATTCTCCTGTG  547