BAC Information

Click to search

BAC

Clone NameB6Ng01-018C07
Chromosome5 (Build37)
Map Location 15,156,850 - 15,157,867
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018C07.bB6Ng01-018C07.g
ACCDH851627DH851628
length1,007787
definitionDH851627|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C07, 5' end.DH851628|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttacttctaacatatagtactctgtaacacacatccattcat
gatcctgtggaccagatactgagtaatataccgtcattactctaaagctg
ccaaggaaataaaaatattcacaaaggattataaaataaatgaggaaggc
cagagccatatgcctcagttttgcttgcaatacagcatcagtgacaacca
cacagcagatataatgaccttccaagtcctactgggaaatagcttttgat
agatgctgttgtccttgaccataagcttgctgtgtttttgctgttgctga
ttagacttatgtttaacatttatgtgaatgggtgtttttcctactgaatg
taatactgtatgtggctcctcccgagagacatttccctcagaggacagaa
ggaatcacaaccattcctggagatgattgttaggcaccatgtgggtcttc
cagagagtagcagatatctaacctgtgaggcatcctcacacctcctgcag
ttggcttttgtcctttcagtgcatttcctgcattagatggacaggatcaa
gtccagttgagtggagaaatctcaggagatgtctaggtacagtgcctgac
ctgcacatactcattgtcctaggctgccaggcatgtatgcagggctctga
tattaccactgctagttttgtgttcaggatattgcctcagtatcttttat
tttcaattttagagcagatcttcacctctcatataggatgacaatgtaga
ttgggtacttttgtaaaattagaattgtgattagcttcctagaagcttga
ttgggaaaagaacccttcttgatagcatgaaatgtttctattgtttcttt
ttaagtcagttatgtttttatttagatttcaagtgctatctgctttcctg
gttccctctgaaaacgcctatctctccctttcccctgctcaccaaccatt
ccactgtggcttctagctgggcatccctacacagggtcaaggccttcctc
ccattga

gaattcctgattttttccaagacttttaacatgaaggggtgttaaatttt
atcaaattatttctcagaatctaatgagatgatcatgtggtttttgtttt
tcagtggatttctgtatgttgaattatctctgcaattcttggatgaagcc
tgcttgattgtggtaaatgatcattttgatgtgttcttggatttggtttg
caagaattttattgagtttttttgcattgatattcataagcaaaaatgtt
ctgaagttctctttctttgttgagtctttgtgtgtttaggaataagtgca
actgtggcttcatagaacaaattgggtagcgttcattctgtttctatttt
gtggtatagtttgaagagtattgggattaggtcttctttgaaggtctgat
agaattctgcactaaacccatctagtcctggcctttgtttggttgggaga
cttttaatgactgcttctatttctttggcagttatgggagtgttagactg
tttatctgatcctggtttcattttggtacctagtgtctgtctagaaaatt
gtccatttcatccaatttttttcagtattgttgagtatagtcttttgtaa
taggaaattatgatttttgaatattctgtttatttctgttgttatttctc
ccttttcaattctgattttgttaatttggatactgtctctttgccctctg
gttagtctggctaagggttttatctattttgtcgttttctcaaagaacca
gctcccggttttattgattctttgtataggttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15156850_15157867
seq2: B6Ng01-018C07.b_46_1052 (reverse)

seq1  TCAATGGGAGGAAAGGCCTTGACCCTGTGTAGGGGAATGCCCAGGCTAGG  50
      ||||||||||| ||||||||||||||||||||||  ||||||| |||| |
seq2  TCAATGGGAGG-AAGGCCTTGACCCTGTGTAGGG--ATGCCCA-GCTA-G  45

seq1  AAGCCAGAGTGGAATGGTTGGTGAGCAGGGGGACAGGGGAGGAGATAGGG  100
      |||||| |||||||||||||||||||| ||||| ||||   |||||| ||
seq2  AAGCCACAGTGGAATGGTTGGTGAGCA-GGGGAAAGGG--AGAGATA-GG  91

seq1  CATTTTCAGAGGGGAAACCAGGAAAGGGGATAACACTTGAAATGTAAATA  150
      | |||||||||||  |||||||||||  |||| |||||||||| ||||||
seq2  CGTTTTCAGAGGG--AACCAGGAAAGCAGATAGCACTTGAAATCTAAATA  139

seq1  AAAACATATCTGACTTAAAAAGAAACAATAGAAACATTTCATGCTATCAA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAACTGACTTAAAAAGAAACAATAGAAACATTTCATGCTATCAA  189

seq1  GAGGGGTCCTTTTCCCAATCAAGCTTCTAGGAAGCTAATCTCAATTCTAA  250
      || |||| |||||||||||||||||||||||||||||||| ||||||| |
seq2  GAAGGGTTCTTTTCCCAATCAAGCTTCTAGGAAGCTAATCACAATTCT-A  238

seq1  ATTTTACAAAAGTGCCCAATCTACATTGTCATCCTATATGAGAGGTGAAG  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAAAGTACCCAATCTACATTGTCATCCTATATGAGAGGTGAAG  288

seq1  ATCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAACAC  338

seq1  AGAACTAGCAGTGGTAATATCAGAGCCCTGCATACATGCCTGGCAGCCTA  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGCAGTGGTAATATCAGAGCCCTGCATACATGCCTGGCAGCCTA  388

seq1  GGACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTGAGA  438

seq1  TTTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGACATGCA  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGAAATGCA  488

seq1  CTGAAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCACAGGTT  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGAAAGGACAAAAGCCAACTGCAGGAGGTGTGAGGATGCCTCACAGGTT  538

seq1  AGATATCTGCTACTCTCTAGAAGACCCACATGGCGCCTAACAATCATCTC  600
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AGATATCTGCTACTCTCTGGAAGACCCACATGGTGCCTAACAATCATCTC  588

seq1  CAGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCGGGA  638

seq1  GGAGCCACATACAGTATTACATTCA-TAGGAAAAACACCCATTCACATAA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGCCACATACAGTATTACATTCAGTAGGAAAAACACCCATTCACATAA  688

seq1  ATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACATAGCAAGTTTATG  749
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  ATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGCTTATG  738

seq1  GTCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGGAA  788

seq1  GGTCATTATATCTGCTGTGTGGTTGTCACTGATGCTGTATTGCAAGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTATATCTGCTGTGTGGTTGTCACTGATGCTGTATTGCAAGCAAA  838

seq1  ACTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATATTCCTTTGTG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATAATCCTTTGTG  888

seq1  AATATTTTTATTTCCTCGGCAGCTTTCGAGTAATGACAGTATATTACTCA  949
      |||||||||||||||| ||||||||| |||||||||| ||||||||||||
seq2  AATATTTTTATTTCCTTGGCAGCTTTAGAGTAATGACGGTATATTACTCA  938

seq1  GTATCTGGTCCACAGGATCATGAATGGATGTGTGTTACAGAGTACTATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGTCCACAGGATCATGAATGGATGTGTGTTACAGAGTACTATAT  988

seq1  GTTAGAAGTAAGAGAATTC  1018
      |||||||||||||||||||
seq2  GTTAGAAGTAAGAGAATTC  1007


| Home | SequenceCutter | Blast | Download |