BAC Information

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BAC

Clone NameB6Ng01-018F19
Chromosome5 (Build37)
Map Location 98,679,351 - 98,822,199
singlet/doubletdoublet
Overlap geneFgf5, 1700007G11Rik
Upstream geneEG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F19.bB6Ng01-018F19.g
ACCDH851786DH851787
length9911,071
definitionDH851786|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F19, 5' end.DH851787|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,821,676 - 98,822,199)(98,679,351 - 98,680,426)
sequence
gaattctttacacacacacaggaaaggggacaagctgttagctgaggaat
gacctgtggaagtggaacatgaaacacataaacaagagcatggtgctgct
cctcattgtcacagagaatctcaatgttcagcccgtccagtgaaatctgg
gaactcagcttcagtgagaaactttgcctcaaaaagtaaggtagagagca
aataagcaagacgcttaatactgacgtctgtcctacacacacacactaac
acaggcacacatacctaaacacaagtgtatacacacatctacttatgcac
aagtgtacacacatatacacatacactcacacaggcacacacacgtaaac
acaagtatacacgcatgtacttatgcccaagtgcgcgcacacacacacac
acacaaattacaagtataaggatctgtgtcttataccttctctcccgagt
tgcactccaccaacttcacagacattacttcatcttcaccatgttccctt
gtgagaactgaactaaggaacagatagatgccaaagacatgggtactctg
gcttctgccatctctggtcagtatccattacgttaagacagactaactta
acaaaatgcaagtagagtctaatctcagatcgtttacattttttcctttt
attagatatgttctttatttacatttcaaatgttatcccctttcgtagtt
tcccctctggaaatctcctatcccctccccgctctccctgctccccaacc
cacccactcccattcccagcactggcattcccctatactggaacatacaa
ccttcacagaacctagggcctctcttcccattgatgaccgactaggccat
cctctgctacatatactgctagaaccacaagtcccatcatgtgttttctt
tgattgttggtttagttccaaggaactctgggggtactggttagtttata
ttgattgttcctactatgggacttcagacccttcagcttct
gaattcatccccagagccatttactcctcagagttccactaccaagtacc
actatttagagtttcagtgtgaactttgagacaatatacacatgaagtcc
acagcaaacttcttgaaacttcatatgccatccctgaaaacctggctaac
gcaacatggtgtgtattgttatgtggacatagcctcttagtaaggaagag
agacagaaatggtgggagccacataatcctttaaaagcagagttaagaca
gcttttgtaggcaaaaaaagattctgactgtctcctcatatcaagaagag
gccttaccttccagttttatgagtcacggaccctcagacatacaaacctc
accaaggacttgcatcgccaggagcagagatttggctcaagtggagcttt
ggggcagaagtctaggcaaggtcctggcactggagtctacttccaggtag
gagagcctgtaggatggcttgcactgccctgggtgatgcacccttagtca
ttacctgcatctttgcccacatcctggtccttgcatgatgcacacttagg
agggatgcctcagcaaagctaggccttgacttacaactagttcaaggtca
ttaacagtgaacctgttccttaggtaaaaggaagccttcacctgaacctc
tatcttcttaggcttgtaaggtctatactgtgtcttccttacagatgggg
tttctggggctagaaactagatcaatgatgtagctgatattcttctcaaa
taggagcagattggaagggtccagattctatggtcaaggaaaagggagtc
tgaggtgttggggcttccaattttgaggtttaaatcagtaaagtgagcat
gtgagactgatgaaacaggacagaagatgcaccatgatgggatggggccg
aacagacggcacacccctatcctgagcctagtcattgatggagtcaatca
gctgccagagcgtttattgctctgttaggcagcaatgagtacttgcacag
gctcttctgaacctactagctttacaatgcagaaggctaagaacattgtt
ttttttttttttgtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98821676_98822199
seq2: B6Ng01-018F19.b_45_568 (reverse)

seq1  TCTGTTCCTTAGTTCAGTTCTCACAAGGGAACATGGTGAAGATGAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTTAGTTCAGTTCTCACAAGGGAACATGGTGAAGATGAAGTAA  50

seq1  TGTCTGTGAAGTTGGTGGAGTGCAACTCGGGAGAGAAGGTATAAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGAAGTTGGTGGAGTGCAACTCGGGAGAGAAGGTATAAGACACA  100

seq1  GATCCTTATACTTGTAATTTGTGTGTGTGTGTGTGTGCGCGCACTTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTATACTTGTAATTTGTGTGTGTGTGTGTGTGCGCGCACTTGGGC  150

seq1  ATAAGTACATGCGTGTATACTTGTGTTTACGTGTGTGTGCCTGTGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACATGCGTGTATACTTGTGTTTACGTGTGTGTGCCTGTGTGAGT  200

seq1  GTATGTGTATATGTGTGTACACTTGTGCATAAGTAGATGTGTGTATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTATATGTGTGTACACTTGTGCATAAGTAGATGTGTGTATACAC  250

seq1  TTGTGTTTAGGTATGTGTGCCTGTGTTAGTGTGTGTGTGTAGGACAGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAGGTATGTGTGCCTGTGTTAGTGTGTGTGTGTAGGACAGACG  300

seq1  TCAGTATTAAGCGTCTTGCTTATTTGCTCTCTACCTTACTTTTTGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTAAGCGTCTTGCTTATTTGCTCTCTACCTTACTTTTTGAGGCA  350

seq1  AAGTTTCTCACTGAAGCTGAGTTCCCAGATTTCACTGGACGGGCTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCACTGAAGCTGAGTTCCCAGATTTCACTGGACGGGCTGAACA  400

seq1  TTGAGATTCTCTGTGACAATGAGGAGCAGCACCATGCTCTTGTTTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCTCTGTGACAATGAGGAGCAGCACCATGCTCTTGTTTATGTG  450

seq1  TTTCATGTTCCACTTCCACAGGTCATTCCTCAGCTAACAGCTTGTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTCCACTTCCACAGGTCATTCCTCAGCTAACAGCTTGTCCCCT  500

seq1  TTCCTGTGTGTGTGTAAAGAATTC  524
      ||||||||||||||||||||||||
seq2  TTCCTGTGTGTGTGTAAAGAATTC  524

seq1: chr5_98679351_98680426
seq2: B6Ng01-018F19.g_67_1137

seq1  GAATTCATCCCCAGAGCCATTTACTCCTCAGAGTTCCACTACCAAGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCCAGAGCCATTTACTCCTCAGAGTTCCACTACCAAGTACC  50

seq1  ACTATTTAGAGTTTCAGTGTGAACTTTGAGACAATATACACATGAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAGAGTTTCAGTGTGAACTTTGAGACAATATACACATGAAGTCC  100

seq1  ACAGCAAACTTCTTGAAACTTCATATGCCATCCCTGAAAACCTGGCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACTTCTTGAAACTTCATATGCCATCCCTGAAAACCTGGCTAAC  150

seq1  GCAACATGGTGTGTATTGTTATGTGGACATAGCCTCTTAGTAAGGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGGTGTGTATTGTTATGTGGACATAGCCTCTTAGTAAGGAAGAG  200

seq1  AGACAGAAATGGTGGGAGCCACATAATCCTTTAAAAGCAGAGTTAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATGGTGGGAGCCACATAATCCTTTAAAAGCAGAGTTAAGACA  250

seq1  GCTTTTGTAGGCAAAAAAAGATTCTGACTGTCTCCTCATATCAAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTAGGCAAAAAAAGATTCTGACTGTCTCCTCATATCAAGAAGAG  300

seq1  GCCTTACCTTCCAGTTTTATGAGTCACGGACCCTCAGACATACAAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACCTTCCAGTTTTATGAGTCACGGACCCTCAGACATACAAACCTC  350

seq1  ACCAAGGACTTGCATCGCCAGGAGCAGAGATTTGGCTCAAGTGGAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGACTTGCATCGCCAGGAGCAGAGATTTGGCTCAAGTGGAGCTTT  400

seq1  GGGGCAGAAGTCTAGGCAAGGTCCTGGCACTGGAGTCTACTTCCAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGTCTAGGCAAGGTCCTGGCACTGGAGTCTACTTCCAGGTAG  450

seq1  GAGAGCCTGTAGGATGGCTTGCACTGCCCTGGGTGATGCACCCTTAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGTAGGATGGCTTGCACTGCCCTGGGTGATGCACCCTTAGTCA  500

seq1  TTACCTGCATCTTTGCCCACATCCTGGTCCTTGCATGATGCACACTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCATCTTTGCCCACATCCTGGTCCTTGCATGATGCACACTTAGG  550

seq1  AGGGATGCCTCAGCAAAGCTAGGCCTTGACTTACAACTAGTTCAAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCCTCAGCAAAGCTAGGCCTTGACTTACAACTAGTTCAAGGTCA  600

seq1  TTAACAGTGAACCTGTTCCTTAGGTAAAAGGAAGCCTTCACCTGAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGAACCTGTTCCTTAGGTAAAAGGAAGCCTTCACCTGAACCTC  650

seq1  TATCTTCTTAGGCTTGTAAGGTCTATACTGTGTCTTCCTTACAGATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTAGGCTTGTAAGGTCTATACTGTGTCTTCCTTACAGATGGGG  700

seq1  TTTCTGGGGCTAGAAACTAGATCAATGATGTAGCTGATATTCTTCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGGCTAGAAACTAGATCAATGATGTAGCTGATATTCTTCTCAAA  750

seq1  TAGGAGCAGATTGGAAGGGTCCAGATTCTATGGTCAAGGAAAAGGGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCAGATTGGAAGGGTCCAGATTCTATGGTCAAGGAAAAGGGAGTC  800

seq1  TGAGGTGTTGGGGCTTCCAATTTTGAGGTTTAAATCAGTAAAGTGAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTTGGGGCTTCCAATTTTGAGGTTTAAATCAGTAAAGTGAGCAT  850

seq1  GTGAGACTGAGGAAACAGGACAGAAGAAGGCCACCATGATGGGATGGGGC  900
      |||||||||| |||||||||||||||| |  |||||||||||||||||||
seq2  GTGAGACTGATGAAACAGGACAGAAGATG--CACCATGATGGGATGGGGC  898

seq1  CGAACAGACGGCACACCCCTATCCTGGAGCCTAGGTCATTGATGGAGTCA  950
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CGAACAGACGGCACACCCCTATCCT-GAGCCTA-GTCATTGATGGAGTCA  946

seq1  ATCAGCTGCCAGAGCGTTTTATTGCTCTGTTAGGCAGCAATGAGTACTTG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCAGCTGCCAGAGCG-TTTATTGCTCTGTTAGGCAGCAATGAGTACTTG  995

seq1  CACAGGCTCTTCTAGAACTACTAGCTTTACAATGCAGACAGCTAAGAACA  1050
      |||||||||||||  | |||||||||||||||||||||  ||||||||||
seq2  CACAGGCTCTTCTGAACCTACTAGCTTTACAATGCAGAAGGCTAAGAACA  1045

seq1  TAGTTTTTTTTTTTTTTTTTTTTTTT  1076
      | ||||||||||||||| ||||||||
seq2  TTGTTTTTTTTTTTTTTGTTTTTTTT  1071