BAC Information

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BAC

Clone NameB6Ng01-018H10
Chromosome5 (Build37)
Map Location 56,606,076 - 56,752,034
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H10.bB6Ng01-018H10.g
ACCDH851860DH851861
length1,0021,202
definitionDH851860|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H10, 5' end.DH851861|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,751,031 - 56,752,034)(56,606,076 - 56,607,123)
sequence
gaattcctcctctaaaagaaaatgctagtatttttttaacaaaaatggta
tattttaataagatgcactagtttgacaaagataaataggtcagtttaac
aaataaaatcagaggaaagtttttatttttaagaaatcaaacactaatat
tttttctagagtaactcatttgaaagattaaaatataaattaaggcaatt
ctcataggactactgaagcacacactataacaattattgtgctaattgga
attattatgatgtatctaacataaaaattatagtgtatctattggtaata
tgtcaaagatgttgaaattattctaataactgtaataatataaagcatta
taaattaatttcacactcagtcttacattaaaacaatgttaaagatcttt
atggttgacttgtttgaatgattacagtatgtaaaaatctgtctttaagc
aggcactgtagttatagtttctcatttgtgttgcttttgtactagaaagg
tggtcactaattgcttttgttcatcaatatagtgcatagtttaaatgtaa
agacactttacagtcctttgaatatgtttccacaattaaaataaaacatt
tgatttgctaatgggctgatagaaaaagaaccttatataaatgggtacta
cagaggtgtatttacagaagtgtaactacactgtaatgttagattctttt
cttttctttgtttttgttttttttgtttgttttgttttgtttttgttttt
tgttttttttttgtttgtttgtttttcaagacaggttttctctgtatagc
cctggctgtccctggaactcactctgtagaccaggctggccttgaacaca
gaaaatctgcctacctctgtctcccaagtgctgggattaaaggcatgccc
accaggccccgcgacatttggaaaagtaaagatgtttcttgggattattt
tgtccataaaacagtacccattttacacttaatttacctttcatatcaca
ta
gaattctcacctgaggaatactgaatggccgagaagcacatgaaaaaatg
ttcagcatcctcaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcaaaatgggtaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtagagaaagaggaacactccttaactgttggga
gtgcaagcttgtacaaccactctggaaatcagcctggtggttcctcagaa
aattggaaatagtactactggaggatcccacaatacctctcctgggcata
tatccatgagatggtccaacaagtaagaagaacacatgctccactatgtt
catagcagccttatttataatagccagaagccagaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacatgatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagagcatcatcctgagtgaggtaacccaatcacaaaaga
actcacatgatatgtactcactgataagtagatattagctcagaaactta
gaatacccaagacataagatacaatttgcaaaacacatgaaactcaagaa
gaacgaagaccaaagtgtggatactttgcctcttcttaaaattgggaatt
gaacacccactatgaaacttttaggaaaaaaaaaatatttcccattcaga
agaactaaatgtaaacttgaaacattaggtccctaatgcaaacttaatat
attacaaacagtaaatatagttttagaggtaaaggaatgaaaaaagattt
tcatttttggcaaaatttcattgttttataagctcaattcaggccatcta
cttctatttacttgcttttaattttaatatttaaatatgtttacagaata
tatttaattattaaattaattttatatattaatcaatttctttttacatt
gtgttacattaatcagtgcaatttataatctgattatctatacattagta
tgcatggagtgaatctgagaatctggagctacctgtaagagatacggaag
cctgcttgaacctgatcagtagaatacatggggcagaagcctggccagga
tccaataacgaattgaaattccagcagacggtatgattgtccacggcatt
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56751031_56752034
seq2: B6Ng01-018H10.b_46_1047 (reverse)

seq1  TATGTGATATGAAA-GTAAATTAAGTGTAATATGTGTACCTGTTTTATGT  49
      |||||||||||||| ||||||||||||||| ||| ||| |||||||||| 
seq2  TATGTGATATGAAAGGTAAATTAAGTGTAAAATGGGTA-CTGTTTTATG-  48

seq1  GACAAAAATAATCCCAAGAAACATCTTTACTTTTCCTAATTGTCGCGGGG  99
      ||| |||||||||||||||||||||||||||||||| || ||||||||||
seq2  GAC-AAAATAATCCCAAGAAACATCTTTACTTTTCC-AAATGTCGCGGGG  96

seq1  CCTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGACAGAGGTAGGCA  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGG-GCATGCCTTTAATCCCAGCACTTGGGAGACAGAGGTAGGCA  145

seq1  GA-TTTCTGTGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCA-GGAC  197
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATTTTCTGTGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGGAC  195

seq1  AGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACAAACAAACAAAAA  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATACAGAGAAAACCTGTCTTGAAAAACAAACAAACAAAAA  245

seq1  AAAAACAAAAAACAAAAACAAAACAAAACAAACAAAAAAAACAAAAACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAACAAAAACAAAACAAAACAAACAAAAAAAACAAAAACAA  295

seq1  AGAAAAGAAAAGAATCTAACATTACAGTGTAGTTACACTTCTGTAAATAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAATCTAACATTACAGTGTAGTTACACTTCTGTAAATAC  345

seq1  ACCTCTGTAGTACCCATTTATATAAGGTTCTTTTTCTATCAGCCCATTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTAGTACCCATTTATATAAGGTTCTTTTTCTATCAGCCCATTAG  395

seq1  CAAATCAAATGTTTTATTTTAATTGTGGAAACATATTCAAAGGACTGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAATGTTTTATTTTAATTGTGGAAACATATTCAAAGGACTGTAA  445

seq1  AGTGTCTTTACATTTAAACTATGCACTATATTGATGAACAAAAGCAATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTTACATTTAAACTATGCACTATATTGATGAACAAAAGCAATTA  495

seq1  GTGACCACCTTTCTAGTACAAAAGCAACACAAATGAGAAACTATAACTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACCTTTCTAGTACAAAAGCAACACAAATGAGAAACTATAACTAC  545

seq1  AGTGCCTGCTTAAAGACAGATTTTTACATACTGTAATCATTCAAACAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCTTAAAGACAGATTTTTACATACTGTAATCATTCAAACAAGT  595

seq1  CAACCATAAAGATCTTTAACATTGTTTTAATGTAAGACTGAGTGTGAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAAAGATCTTTAACATTGTTTTAATGTAAGACTGAGTGTGAAAT  645

seq1  TAATTTATAATGCTTTATATTATTACAGTTATTAGAATAATTTCAACATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATAATGCTTTATATTATTACAGTTATTAGAATAATTTCAACATC  695

seq1  TTTGACATATTACCAATAGATACACTATAATTTTTATGTTAGATACATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATATTACCAATAGATACACTATAATTTTTATGTTAGATACATCA  745

seq1  TAATAATTCCAATTAGCACAATAATTGTTATAGTGTGTGCTTCAGTAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCCAATTAGCACAATAATTGTTATAGTGTGTGCTTCAGTAGTC  795

seq1  CTATGAGAATTGCCTTAATTTATATTTTAATCTTTCAAATGAGTTACTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAATTGCCTTAATTTATATTTTAATCTTTCAAATGAGTTACTCT  845

seq1  AGAAAAAATATTAGTGTTTGATTTCTTAAAAATAAAAACTTTCCTCTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATATTAGTGTTTGATTTCTTAAAAATAAAAACTTTCCTCTGAT  895

seq1  TTTATTTGTTAAACTGACCTATTTATCTTTGTCAAACTAGTGCATCTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTAAACTGACCTATTTATCTTTGTCAAACTAGTGCATCTTAT  945

seq1  TAAAATATACCATTTTTGTTAAAAAAATACTAGCATTTTCTTTTAGAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACCATTTTTGTTAAAAAAATACTAGCATTTTCTTTTAGAGGA  995

seq1  GGAATTC  1004
      |||||||
seq2  GGAATTC  1002

seq1: chr5_56606076_56607123
seq2: B6Ng01-018H10.g_279_1268

seq1  ACAACCACTCTGGAAATCAGCCTGGTGGTTCCTCAGAAAATTGGAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTCTGGAAATCAGCCTGGTGGTTCCTCAGAAAATTGGAAATAG  50

seq1  TACTACTGGAGGATCCCACAATACCTCTCCTGGGCATATATCCATGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGGAGGATCCCACAATACCTCTCCTGGGCATATATCCATGAGAT  100

seq1  GGTCCAACAAGTAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAACAAGTAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTT  150

seq1  ATTTATAATAGCCAGAAGCCAGAAAGAACCCAGATGCCCCTCAACAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAATAGCCAGAAGCCAGAAAGAACCCAGATGCCCCTCAACAGAGG  200

seq1  AATGGATACAGAAAATGTGGTACATTTACATGATGGAGTACTACTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATACAGAAAATGTGGTACATTTACATGATGGAGTACTACTCAGCT  250

seq1  ATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGA  300

seq1  GAGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATA  350

seq1  TGTACTCACTGATAAGTAGATATTAGCTCAGAAACTTAGAATACCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACTGATAAGTAGATATTAGCTCAGAAACTTAGAATACCCAAGA  400

seq1  CATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCA  450

seq1  AAGTGTGGATACTTTGCCTCTTCTTAAAATTGGGAATTGAACACCCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGATACTTTGCCTCTTCTTAAAATTGGGAATTGAACACCCACTA  500

seq1  TGAAACTTTTAGGAAAAAAAAAATATTTCCCATTCAGAAGAACTAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTTAGGAAAAAAAAAATATTTCCCATTCAGAAGAACTAAATGT  550

seq1  AAACTTGAAACATTAGGTCCCTAATGCAAACTTAATATATTACAAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAAACATTAGGTCCCTAATGCAAACTTAATATATTACAAACAGT  600

seq1  AAATATAGTTTTAGAGGTAAAGGAATGAAAAAAAGATTTTCATTTTTGGC  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATATAGTTTTAGAGGTAAAGGAATG-AAAAAAGATTTTCATTTTTGGC  649

seq1  AAAAATTTCAATTGTTTTATAAGGCTCAATTCAGGCCATCTACTTCTATT  700
       |||||||| |||||||||||| ||||||||||||||||||||||||| |
seq2  -AAAATTTC-ATTGTTTTATAA-GCTCAATTCAGGCCATCTACTTCTA-T  695

seq1  TTACTTGCTTTTAATTTTTAATATTTAAAATATGTTTTACAAGAATATAT  750
      |||||||||||||| ||||||||||| ||||||| ||||| |||||||||
seq2  TTACTTGCTTTTAA-TTTTAATATTT-AAATATG-TTTAC-AGAATATAT  741

seq1  TTAATTATTAAAATTAATTTTTAATATAATAAATTCAATTTTCTTTTTTA  800
      ||||||||| |||||||||||  ||||| |||  |||| |||||||||  
seq2  TTAATTATT-AAATTAATTTT--ATATATTAA--TCAA-TTTCTTTTT--  783

seq1  ACATTGTGTTACAATTTAAATCAGTTGCATATTTATAATCCTGATTATCT  850
      |||||||||||||   | |||||| |||| ||||||||| ||||||||||
seq2  ACATTGTGTTACA---TTAATCAG-TGCA-ATTTATAAT-CTGATTATCT  827

seq1  ATACACATTAGTATGCAATGAGTGAAATCTGAGATACT-GAGCATACTGT  899
      ||  |||||||||||||  ||||| |||||||||  || ||||   ||| 
seq2  AT--ACATTAGTATGCATGGAGTG-AATCTGAGAATCTGGAGCTACCTG-  873

seq1  ATAAGAGATAAACGGAAAGGCCCTGCCTTGAAAACTGAGCATATAGAATA  949
       ||||||||  ||||||    |||| |||| || |||| ||  |||||||
seq2  -TAAGAGAT--ACGGAA---GCCTG-CTTG-AACCTGATCA-GTAGAATA  914

seq1  CATGGGGGCAAGAAAAAGCATGGCACAAGGAAATCCAAATTAAACAAGAA  999
      ||||||     | | |||| |||  | |||  ||||      || ||  |
seq2  CATGGG-----GCAGAAGCCTGG--CCAGG--ATCC------AATAACGA  949

seq1  ATAGAAATATCTAAAGCAAGACCTGTAATGATATTGCCCACGGCATTTC  1048
      || |||||   |  ||| ||||  |  |||  |||| ||||||||||||
seq2  ATTGAAAT---TCCAGC-AGAC--GGTATG--ATTGTCCACGGCATTTC  990