BAC Information

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BAC

Clone NameB6Ng01-018O02
Chromosome5 (Build37)
Map Location 14,960,884 - 15,212,931
singlet/doubletdoublet
Overlap geneSpeer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018O02.bB6Ng01-018O02.g
ACCDH852148DH852149
length9801,021
definitionDH852148|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O02, 5' end.DH852149|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,211,828 - 15,212,931)(14,960,884 - 14,961,910)
sequence
gaattcagtcaatttgatgcagagagaacagtacaaagaatccgtgaaac
caagatcctgttctttgagacaatcaacaaggtagacttatgcttagcca
aattaactgaaaggtagagagacaatacccagaatagcaaaatcagaaat
gaaacaggagacataacaatggacactgaggtaattgaaagaatcactag
gtcttactgcagaagcctgtactgcaaaaaatagcaaaatccaaatgaaa
tgggtgacttatagacagctatcaattatcaaagttaaatgaagatctgg
taaagtaactaacaggcctataacccctaagaaaatagaaacagtcatca
aaagtcctccactccaaaaaagaatatgttcatggatttggagtcaggac
tatgctgtgtattggttattgaaaattaatatcagagtgacactgttgtg
tgtctttaggaagatgactggtgggagacactgatcctaaaattcctttg
tattttagtctattttgctagaaaaacataggaaaaaagaatatattggg
gtacatccaggaaacaggtctgggagccattaaatattcccagaggaaaa
gtttcaaccagttgctaaaagtgtttttacaaggtgggatgaaagatatc
ctttcaaatacaattggtgtgaaatgggtgagcgaaagctttacctattc
atcctctttccactttctctctactttggggttactcaaagaatcctaaa
accttttccacaaaaatctggggtttctacagggcagagatttgaaaacg
agtttatgaaaacacacacagagttcagttaaggggcctcacttgagtgg
aggaaagcaggaaagtttaggggagcagagaatttatttttcatggcctg
aggatataagcccaggtgtcttgggagagaacagaaaatttgggtggttc
ccagctggaagagaggtgtgtgcaaatcag
gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaaatctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtctttggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
gatacagcaggatattagcccatgcaactgtatagggagatacagaagct
acatagtacttcaagtgttgctatcatatatgtctaagtgacattttaca
gattaatgccaagtgaaatcaaaatatagtcccctacccattacatctta
aaactcaatgatctatcaacagttgccatttcacagcaaaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagaacatgtatacttatacattctctttgaaattcaaggtggtt
aatttgctttactaccatataaaaacaatctcgctgtggtcagggaaaaa
agctcattttccatgtttaaaaagtacattggctgggtgtggtggtgcac
gcctttaatcccagctcggggaggcagaggcaagcagatttctgagttgg
aggccagcctggtctacaaagtgagttccaggacagccagggctatacag
agaaaccctgtctagaaaaaccaaaacaaagtacacattgtctctggcaa
ggaatcacatccatagaccacttagacctatgttgatttggctagaatgc
agacattccctaattacacacctttaatccaaacaatgaaagtaacattc
attataagaatgaagattctgtttgccagtgattccattgagggcaaagg
gatgatcagagagaataacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15211828_15212931
seq2: B6Ng01-018O02.b_257_1022 (reverse)

seq1  CTGATTTGCACACACCATCTCTTTCCAGCTCGGATACCACCAAAGTATTC  50
      |||||||||||||||| |||| |||||||| ||| |||||| || | |||
seq2  CTGATTTGCACACACC-TCTC-TTCCAGCTGGGA-ACCACCCAAATTTTC  47

seq1  TGTTCTCTCCCAAGACACCTGGGGTTTTATATCCTCAGGCCCTGAAAAAT  100
      |||||||||||||||||||||||   ||||||||||||||| ||||||||
seq2  TGTTCTCTCCCAAGACACCTGGG--CTTATATCCTCAGGCCATGAAAAAT  95

seq1  AACTTATCTGCTCCCCTAAACCTTTCCTGCTTTCCTCCACTCAAGTGAGG  150
      || || |||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTCTCTGCTCCCCTAAA-CTTTCCTGCTTTCCTCCACTCAAGTGAGG  144

seq1  -CCCTTAACTGACCTCTGCGTGTGTTTTCAT-AACTTGTTTTCCAATCTC  198
       ||||||||||| ||||| |||||||||||| |||| |||||| ||||||
seq2  CCCCTTAACTGAACTCTGTGTGTGTTTTCATAAACTCGTTTTCAAATCTC  194

seq1  TGCCCTGTAGAAA-CCCAGATTTTGGTGG-AAAGGTTTTGGGATTCTTTG  246
      ||||||||||||| |||||||||| |||| ||||||||| ||||||||||
seq2  TGCCCTGTAGAAACCCCAGATTTTTGTGGAAAAGGTTTTAGGATTCTTTG  244

seq1  AGTAACCCCAAAGTAGAGAGAAAGTGGAAAGAGGATGAATAGTTAAAGCT  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTAACCCCAAAGTAGAGAGAAAGTGGAAAGAGGATGAATAGGTAAAGCT  294

seq1  TTCGCTCACCCATTTCACACCAATTGTATTTGAAAGGATATCTTTCATCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCACCCATTTCACACCAATTGTATTTGAAAGGATATCTTTCATCC  344

seq1  CATCTGGTAAAAACACTTTTAGCAACTGGTTGAAACTTTTCCTCTGGGAA  396
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTAAAAACACTTTTAGCAACTGGTTGAAACTTTTCCTCTGGGAA  394

seq1  TACTTAATGGCTCCCAGACCTGTTTCCTGGATGTACCCCAATATATTCTT  446
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGGCTCCCAGACCTGTTTCCTGGATGTACCCCAATATATTCTT  444

seq1  TTTTCCTATGTTTTTCTAGGAAAATAGAGTAAAATACAGAAGGCATTTTA  496
      ||||||||||||||||||| |||||||| ||||||||| |||| ||||||
seq2  TTTTCCTATGTTTTTCTAGCAAAATAGACTAAAATACA-AAGGAATTTTA  493

seq1  GGATCAGTGTCTCCCACCAGTCATCTTCCTAAAGACACACAACTGTGTCA  546
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGATCAGTGTCTCCCACCAGTCATCTTCCTAAAGACACACAACAGTGTCA  543

seq1  CGCTGATATTAATTTTCAATAACCAATACACAGCATAGTCCTGACTCCAA  596
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATATTAATTTTCAATAACCAATACACAGCATAGTCCTGACTCCAA  593

seq1  ATCCATGAACATGTTCTTTTCTATTATGTATCACTTCTTATGAACCCAAT  646
      |||||||||||| ||                                   
seq2  ATCCATGAACATATT-----------------------------------  608

seq1  TACCTTCTGACCAATATCAGTATCTAATCTCATAATTTTAAATACACAAG  696
                                                        
seq2  --------------------------------------------------  608

seq1  GAAGACATATTCTTCTTTACTATGAAGATAAGTAAATTAGTATGAAGTGG  746
                                                        
seq2  --------------------------------------------------  608

seq1  TTAAAAAAGAGAAATTGGACTGAATTCCTCTTTCTTTGTTGAGTCTTTGT  796
                                                        
seq2  --------------------------------------------------  608

seq1  GTGGTTTCTGTATCAGGGTGACTATGAACTCATAGAATGAGTTTAGCTAT  846
                                                        
seq2  --------------------------------------------------  608

seq1  GTTTCTTCTGTTTCTACTTTATGAATAATTTGAGGAGTATTTCACTAACT  896
                                                        
seq2  --------------------------------------------------  608

seq1  CTTTTTTGAATATCTAGTAGAATTCTGCACTACAACTTTCTGCCCTTGGG  946
                                                        
seq2  --------------------------------------------------  608

seq1  CTTTTTTGGAGTGGAGGACTTTTGATGACTGTGTCTATTTTCTTAGTTGT  996
      |||||||||||||||||||||||||||||||| |||||||||||||  ||
seq2  CTTTTTTGGAGTGGAGGACTTTTGATGACTGTTTCTATTTTCTTAGGGGT  658

seq1  TATAGGCCTGTTAGTTACTTTACCAGATCTTCATTTAACTTTGATAATTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCTGTTAGTTACTTTACCAGATCTTCATTTAACTTTGATAATTG  708

seq1  ATAGCTGTCTATAAGTCACCCATTTCATTTGGATTTTGCTAATTTTTGCA  1096
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAGCTGTCTATAAGTCACCCATTTCATTTGGATTTTGCTATTTTTTGCA  758

seq1  GTACAGGC  1104
      ||||||||
seq2  GTACAGGC  766

seq1: chr5_14960884_14961910
seq2: B6Ng01-018O02.g_69_1089

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50

seq1  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100

seq1  TCAAGCACACTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150
      ||||| || ||||||| |||||||||||||||||||||||||||||||||
seq2  TCAAGTACTCTGGAAAATCTATGATGGTGCTAACAATTTCAGGAATTTCC  150

seq1  AACAGGACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTTGGTGTTA  200

seq1  GCTGAATTTTCAAATCAAAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250

seq1  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300

seq1  GGTACATCAGGATATTAGGCCATGCAATCGTATACGGAGATACAGAAGCT  350
      | |||| ||||||||||| ||||||||  ||||| |||||||||||||||
seq2  GATACAGCAGGATATTAGCCCATGCAACTGTATAGGGAGATACAGAAGCT  350

seq1  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAATTGATATTTTACA  400
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACA  400

seq1  GATTAATGCCAAGTAAAATCAAAATATAGTCTCCTACCCATTACATCTTA  450
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GATTAATGCCAAGTGAAATCAAAATATAGTCCCCTACCCATTACATCTTA  450

seq1  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAG  500
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACTCAATGATCTATCAACAGTTGCCATTTCACAGCAAAAAGAAAGCAG  500

seq1  TAGGTATAAATTGAACACAGAACTGCTTCTCTTCTAAGAAATGAACACAG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550

seq1  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGAT  600
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ATATATAGA-ACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGGT  599

seq1  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAAA  649

seq1  AAGCTCATTTTCCACATTTAAAAAGTACGTTGGCCGGGTGTGGTGGCACA  700
      ||||||||||||||  |||||||||||| ||||| |||||||||||  ||
seq2  AAGCTCATTTTCCATGTTTAAAAAGTACATTGGCTGGGTGTGGTGGTGCA  699

seq1  CGTCTTTAATCCCAGCTCTGGGTAGGCAGAGGCAGGCAGATTTCTGAGTT  750
      || ||||||||||||||| ||| ||||||||||| |||||||||||||||
seq2  CGCCTTTAATCCCAGCTC-GGGGAGGCAGAGGCAAGCAGATTTCTGAGTT  748

seq1  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  798

seq1  AGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTCTGGC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAAACCCTGTCTAGAAAAACCAAAACAAAGTACACATTGTCTCTGGC  848

seq1  AAGGAATCACATCCATAGACCACTTAGACCTATG-TGATTTGGCTAGAAT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGGAATCACATCCATAGACCACTTAGACCTATGTTGATTTGGCTAGAAT  898

seq1  GCAGACATTCCCTAATTACACACCTTTAATCCCAAACAATGAAAGTAACA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGACATTCCCTAATTACACACCTTTAAT-CCAAACAATGAAAGTAACA  947

seq1  TTCATTTATAGAAGGAAGAGTCATGTTTGCAAGTGACATCTAATTGAGGG  999
      ||||||   |||| ||||| || ||||||| ||||  ||   ||||| ||
seq2  TTCATTATAAGAATGAAGATTC-TGTTTGCCAGTG--ATTCCATTGA-GG  993

seq1  GCAAAGTGATGAATCAGAGAG-ATAACAG  1027
      |||||| |||| ||||||||| |||||||
seq2  GCAAAGGGATG-ATCAGAGAGAATAACAG  1021