BAC Information

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BAC

Clone NameB6Ng01-019D02
Chromosome5 (Build37)
Map Location 17,427,976 - 17,501,438
singlet/doubletdoublet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019D02.bB6Ng01-019D02.g
ACCDH852357DH852358
length1,000869
definitionDH852357|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D02, 5' end.DH852358|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,427,976 - 17,428,905)(17,500,573 - 17,501,438)
sequence
gaattcttcactaaaacctcttgaccctgggctttttttttggttgggag
gtgtggggagccgccctcacattcgccgttgcaagatggcgctgacatcc
tgtgttctaagtggtaaacaaataatctgcgcatgtgccaagggtagttt
tccactacatgtgctctgccttccccgtgacgacaactgggctgatgggc
tgcagccaatcagggagtgacacgtcctaggcagaggataatccttaaaa
gggacggggtttcgccattctctctcttgcttttgctcttgctctcttgc
tctggctcttgcattcttgctcctgaagatgtaagcaataaagctcttgc
ttttgctcttgcactcttgctcctgaagatgtaagcaataaagttttgcc
gcagaagattctggtttgctgcgtctttcctggccggtcgcgagaacgcg
tgtaagagggaggattttaatgactgcttctatttccttatggattatga
aactgtttaaacactttacctgaccttgatttaactttggtacatggtat
ctgactagaaaatcattcattttctctatagggagaagctatctggtttc
ataagaaaatatctaaatgcttatttgtatgtgcatgtgtgtatgtatat
atgtgtatgtgtttgtgtctgtgtacatgcacacgtttcttattttgttc
tgtcttgcccttctttttgaactacagtggcttcttacccttagcttaga
gatgaacaatagattaggatgaaggtagagtaagagaagcagaaggtgag
aagcctaaaatggaaatggaaccctgaaagaggaatggcatccagtgaac
atggagttagttgtatagaacataattccaacatatgctcttcctgtaaa
cagggctcatagaatgaacacatatggacagatgtaggcctcctcatatg
tgtatggttgtacttagaacagtgaggaaaataaaaaaaaacactgagac

gaattcattctgtaccatgcaatcacatttccaaataagagagaaaaaga
tatatcagatcccggaatagaagacttgcatgtctgtttgagaagtaatt
aaaaatgtcaaatgctgttgctactaaactttcagtctttgaatattgac
agctgttgagaattcctgatctgttgtaggacacaggtgatccacatata
ttgcttacaggaattcaattgcagaacattttgggcaatttttttctaat
tatcatcatcataactcccatcctgattattatacttgtgtgtgtgatgt
gtatgatgtgtgtgtgttcaggtatgccatggtgtacatgtggaagtcaa
agcataattccttggagctggttctcttttctctttatatgtatttacta
catcacccggggccattaggcttctcgtcagtaggcttcctatttctttg
taacaactagagaatgtcacattaaaaatgcaactacctgctacattttt
ttcttcctctaagcatttgattatttcttctcatctactacccctttaag
ttcctctatgtaaatcacaatagcctgtaacaacatgaccagaagaccta
cgtttacatccgtagacagaataccacatttagctttaaattcatgtttg
caattgcttgcatgtgtaaacgtcttatagaatgaggatgcacaagactt
ctaagacacagtgagccgtcttaaccactcttccagtgaaaaggatttac
agaaactcacatgcagctgtgctaaccccgtttaagtgccaaacactttt
ataaagatcaatagccagcccccctttctggagtacattttttccatttc
acctacagattactaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17427976_17428905
seq2: B6Ng01-019D02.b_119_1044

seq1  GCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATA  50

seq1  ATCTGCGCATGTGCCAAGGGTAGTTTTCCACTACATGTGCTCTGCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGCATGTGCCAAGGGTAGTTTTCCACTACATGTGCTCTGCCTTCC  100

seq1  CCGTGACGACAACTGGGCTGATGGGCTGCAGCCAATCAGGGAGTGACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGACGACAACTGGGCTGATGGGCTGCAGCCAATCAGGGAGTGACACG  150

seq1  TCCTAGGCAGAGGATAATCCTTAAAAGGGACGGGGTTTCGCCATTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCAGAGGATAATCCTTAAAAGGGACGGGGTTTCGCCATTCTCTC  200

seq1  TCTTGCTTTTGCTCTTGCTCTCTTGCTCTGGCTCTTGCATTCTTGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTGCTCTTGCTCTCTTGCTCTGGCTCTTGCATTCTTGCTCCT  250

seq1  GAAGATGTAAGCAATAAAGCTCTTGCTTTTGCTCTTGCACTCTTGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAGCAATAAAGCTCTTGCTTTTGCTCTTGCACTCTTGCTCCT  300

seq1  GAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGCGT  350

seq1  CTTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAGGGAGGATTTTAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAGGGAGGATTTTAATGAC  400

seq1  TGCTTCTATTTCCTTATGGATTATGAAACTGTTTAAACACTTTACCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATTTCCTTATGGATTATGAAACTGTTTAAACACTTTACCTGAC  450

seq1  CTTGATTTAACTTTGGTACATGGTATCTGACTAGAAAATCATTCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTAACTTTGGTACATGGTATCTGACTAGAAAATCATTCATTTTC  500

seq1  TCTATAGGGAGAAGCTATCTGGTTTCATAAGAAAATATCTAAATGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGAGAAGCTATCTGGTTTCATAAGAAAATATCTAAATGCTTAT  550

seq1  TTGTATGTGCATGTGTGTATGTATATATGTGTATGTGTTTGTGTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTGCATGTGTGTATGTATATATGTGTATGTGTTTGTGTCTGTGT  600

seq1  ACATGCACACGTTTCTTATTTTGTTCTGTCTTGCCCTTCTTTTTGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACGTTTCTTATTTTGTTCTGTCTTGCCCTTCTTTTTGAACTA  650

seq1  CAGTGGCTTCTTACCCTTAGC-TAGAGATGAACAATAGATTAGGATGAAG  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTGGCTTCTTACCCTTAGCTTAGAGATGAACAATAGATTAGGATGAAG  700

seq1  GTAGAG-AAGAGAAGCAGAAGGTGAGAAGCCTAAAATGGAAATGGAA-CC  747
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGAGTAAGAGAAGCAGAAGGTGAGAAGCCTAAAATGGAAATGGAACCC  750

seq1  TGAAAGAGGAATGGCATCCAGTGAACATGGAGTTAGTTGTATAGAACATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGGAATGGCATCCAGTGAACATGGAGTTAGTTGTATAGAACATA  800

seq1  ATTCCAACATATGCTCTTCCTGTAAACAGGGCTCATAGGAATGAACACAT  847
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCAACATATGCTCTTCCTGTAAACAGGGCTCATA-GAATGAACACAT  849

seq1  ATGACAAGATGTAGGCCTCCCTCATATGTGTATTGTGTGTACATAGAAAC  897
      |||   |||||||||||| |||||||||||||| || ||||| ||| |||
seq2  ATGGACAGATGTAGGCCT-CCTCATATGTGTATGGT-TGTACTTAG-AAC  896

seq1  AGTGAGGAAAAAAAAAAAAAAAACACAGGAGAC  930
      ||||||||||| ||||||||| ||    |||||
seq2  AGTGAGGAAAATAAAAAAAAACAC---TGAGAC  926

seq1: chr5_17500573_17501438
seq2: B6Ng01-019D02.g_70_938 (reverse)

seq1  ATGTTAGTCATCTGTAGTTGAAATGGAAAAACTGTACT-CAGAAAGGGGG  49
      |||||||| |||||||| ||||||||||||| |||||| |||||||||||
seq2  ATGTTAGTAATCTGTAGGTGAAATGGAAAAAATGTACTCCAGAAAGGGGG  50

seq1  GCTGGCTATTGATCTTTAT-AAAGTGTTTGGCACTTAAGC-GGGTTAGCA  97
      ||||||||||||||||||| |||||||||||||||||| | |||||||||
seq2  GCTGGCTATTGATCTTTATAAAAGTGTTTGGCACTTAAACGGGGTTAGCA  100

seq1  CAGCTGCATGTGAGTTTCTGTAAATCCTTTTCACTGGAAGAGTGGTTAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCATGTGAGTTTCTGTAAATCCTTTTCACTGGAAGAGTGGTTAAG  150

seq1  ACGGCTCACTGTGTCTTAGAAGTCTTGTGCATCCTCATTCTATAAGACGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTCACTGTGTCTTAGAAGTCTTGTGCATCCTCATTCTATAAGACGT  200

seq1  TTACACATGCAAGCAATTGCAAACATGAATTTAAAGCTAAATGTGGTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATGCAAGCAATTGCAAACATGAATTTAAAGCTAAATGTGGTATT  250

seq1  CTGTCTACGGATGTAAACGTAGGTCTTCTGGTCATGTTGTTACAGGCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACGGATGTAAACGTAGGTCTTCTGGTCATGTTGTTACAGGCTAT  300

seq1  TGTGATTTACATAGAGGAACTTAAAGGGGTAGTAGATGAGAAGAAATAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTACATAGAGGAACTTAAAGGGGTAGTAGATGAGAAGAAATAAT  350

seq1  CAAATGCTTAGAGGAAGAAAAAAATGTAGCAGGTAGTTGCATTTTTAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTAGAGGAAGAAAAAAATGTAGCAGGTAGTTGCATTTTTAATG  400

seq1  TGACATTCTCTAGTTGTTACAAAGAAATAGGAAGCCTACTGACGAGAAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTCTAGTTGTTACAAAGAAATAGGAAGCCTACTGACGAGAAGC  450

seq1  CTAATGGCCCCGGGTGATGTAGTAAATACATATAAAGAGAAAAGAGAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCCCCGGGTGATGTAGTAAATACATATAAAGAGAAAAGAGAACC  500

seq1  AGCTCCAAGGAATTATGCTTTGACTTCCACATGTACACCATGGCATACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGGAATTATGCTTTGACTTCCACATGTACACCATGGCATACCT  550

seq1  GAACACACACACATCATACACATCACACACACAAGTATAATAATCAGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACACATCATACACATCACACACACAAGTATAATAATCAGGAT  600

seq1  GGGAGTTATGATGATGATAATTAGAAAAAAATTGCCCAAAATGTTCTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTATGATGATGATAATTAGAAAAAAATTGCCCAAAATGTTCTGCA  650

seq1  ATTGAATTCCTGTAAGCAATATATGTGGATCACCTGTGTCCTACAACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTCCTGTAAGCAATATATGTGGATCACCTGTGTCCTACAACAGA  700

seq1  TCAGGAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGC  750

seq1  AACAGCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTC  800

seq1  TATTCCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTG  850

seq1  CATGGTTCAGAATGAATTC  866
      |||||| ||||||||||||
seq2  CATGGTACAGAATGAATTC  869