BAC Information

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BAC

Clone NameB6Ng01-019H01
Chromosome5 (Build37)
Map Location 106,069,753 - 106,208,764
singlet/doubletdoublet
Overlap geneLrrc8d
Upstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
Downstream geneLOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H01.bB6Ng01-019H01.g
ACCDH852524DH852525
length968740
definitionDH852524|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H01, 5' end.DH852525|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,069,753 - 106,070,719)(106,208,030 - 106,208,764)
sequence
gaattccatcttgactgccagagtcttgcaaggagttgacgacatgttgt
tattcctccattcctccgtcttcctcttatccatccaacaagtgtgcttc
atccccagagaatgagagggcaggaagggagggacttcagaagagtgctg
tgctgaatgaagaaggaagtgcagagtttttagcccaggaacttagcaat
ggtcttctgtagtacaaccaacataaacttattttccactagcctacaaa
taaatgagactcaggctatggttattttatttggctttgacaattactgg
ggggtcacccctaatctactattctaactgctggcctggctgcctcccca
gtggtgtaccccaaatacttgctgcttctcctggccatgtgctcatggtc
catctaacctcaggacagcttctgcctcttgttctgcctcttgttctagc
tccttctcctggtctctccacactcctctctcttctctgccctcaaccag
attactcgaaacccatctacctctgatcccccccagcaattggctgttgc
caattttatttaaccaatagctttaaataaaggaacaaggattgcacaac
aaaagctcgtagcccagaccttcaggtacagaatttagcattacagtaca
tggcaatgatccaagtctagcttcattcacttaataaatatcaaagtttt
atttttgctggaatatgtagcatgtaagtgtatgtagtgtgtactgcata
ttgtacatgtgtgtgcacgtatgtgatgaggacagaggttgatatcaaat
atcttcctcattccctctcaacctttactaacagagccaagtttcttctt
tcccttgaattctagagccactcgcctattcagctagctaatttccccgt
tagaatcccatttctaccttccaaatgctgggataaaaggcaggctggca
gggcccccacatctacag
gaattccatgcatgtttttgcgtgattttcctcaagtctaaaatgtttca
aaaccaaaaacactgaaataatggatgaaacagagccaggaactggagat
tctggcagagatacaggggatgaggagaggctgagtcagacctgaattct
ggcttctgggattccagaccaaaggacttaaggaaaatagacaaaagtgt
acctagcccagggctacgaataccagaaccttgactctaaccagaaagag
aactgttctggtttgaacagtggctcgagggtggagttggtccagttcct
ggtgactcagccacagagctaagcattcactaacaagtccttgcaacacg
gaggccccaggcctgggtgcctagggtgtggtgtactcctcctacgatgc
tcctggagcattttggatgagagcaggggaaagggacccaaggagacgga
ggtctcactatttagacaaggctagccttaaatgcataatcctcctgctt
caatttttcttgtgttgtgagtttctggagcccctgtttaaaataaacat
ttaagaaaatataatacagttttaggtttacagaaaagttaggagtatta
ccaaagggttacaatttatctcatactcagtttcccctgttgttaaggtc
tcacatcagtgtggcacatttgtcaaaatgtatcccaatacaaaacagca
agacacagtaatgttcacattctgttgattttcctagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106069753_106070719
seq2: B6Ng01-019H01.b_38_1005

seq1  GAATTCCATCTTGACTGCCAGAGTCTTGCAAGGAGTTGACGACATGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTGACTGCCAGAGTCTTGCAAGGAGTTGACGACATGTTGT  50

seq1  TATTCCTCCATTCCTCCGTCTTCCTCTTATCCATCCAACAAGTGTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCCATTCCTCCGTCTTCCTCTTATCCATCCAACAAGTGTGCTTC  100

seq1  ATCCCCAGAGAATGAGAGGGCAGGAAGGGAGGGACTTCAGAAGAGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGAGAATGAGAGGGCAGGAAGGGAGGGACTTCAGAAGAGTGCTG  150

seq1  TGCTGAATGAAGAAGGAAGTGCAGAGTTTTTAGCCCAGGAACTTAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGAAGAAGGAAGTGCAGAGTTTTTAGCCCAGGAACTTAGCAAT  200

seq1  GGTCTTCTGTAGTACAACCAACATAAACTTATTTTCCACTAGCCTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTAGTACAACCAACATAAACTTATTTTCCACTAGCCTACAAA  250

seq1  TAAATGAGACTCAGGCTATGGTTATTTTATTTGGCTTTGACAATTACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGACTCAGGCTATGGTTATTTTATTTGGCTTTGACAATTACTGG  300

seq1  GGGGTCACCCCTAATCTACTATTCTAACTGCTGGCCTGGCTGCCTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCACCCCTAATCTACTATTCTAACTGCTGGCCTGGCTGCCTCCCCA  350

seq1  GTGGTGTACCCCAAATACTTGCTGCTTCTCCTGGCCATGTGCTCATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTACCCCAAATACTTGCTGCTTCTCCTGGCCATGTGCTCATGGTC  400

seq1  CATCTAACCTCAGGACAGCTTCTGCCTCTTGTTCTGCCTCTTGTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACCTCAGGACAGCTTCTGCCTCTTGTTCTGCCTCTTGTTCTAGC  450

seq1  TCCTTCTCCTGGTCTCTCCACACTCCTCTCTCTTCTCTGCCCTCAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTGGTCTCTCCACACTCCTCTCTCTTCTCTGCCCTCAACCAG  500

seq1  ATTACTCGAAACCCATCTACCTCTGATCCCCCCCAGCAATTGGCTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCGAAACCCATCTACCTCTGATCCCCCCCAGCAATTGGCTGTTGC  550

seq1  CAATTTTATTTAACCAATAGCTTTAAATAAAGGAACAAGGATTGCACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATTTAACCAATAGCTTTAAATAAAGGAACAAGGATTGCACAAC  600

seq1  AAAAGCTCGTAGCCCAGACCTTCAGGTACAGAATTTAGCATTACAGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCGTAGCCCAGACCTTCAGGTACAGAATTTAGCATTACAGTACA  650

seq1  TGGCAATGATCCAAGTCTAGCTTCATTCACTTAATAAATATC-AAGTTTT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCAATGATCCAAGTCTAGCTTCATTCACTTAATAAATATCAAAGTTTT  700

seq1  ATTTTTGCTGGAATATGTAGCATGTAAGTGTATGTAGTGTGTACTGCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTGGAATATGTAGCATGTAAGTGTATGTAGTGTGTACTGCATA  750

seq1  -TGTACATGTGTGTGCACGTATGTGAGGAGGACAGAGGTTGATATCAAAT  798
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGTACATGTGTGTGCACGTATGTGATGAGGACAGAGGTTGATATCAAAT  800

seq1  ATCTTCCTCATTCCCTCTCAACC-TTACTAACAGAGCCAAGTTTCTTCTT  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTTCCTCATTCCCTCTCAACCTTTACTAACAGAGCCAAGTTTCTTCTT  850

seq1  TCCCTTGAA-TCTAGAGCCCACTCGCCTATTCAGCTAGCTAATTTCCCCG  896
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TCCCTTGAATTCTAGAG-CCACTCGCCTATTCAGCTAGCTAATTTCCCCG  899

seq1  TTAGAATCCCATCTCTACCTTCCAAATGCTGGGATAAAAGGCAGGCTGCC  946
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TTAGAATCCCATTTCTACCTTCCAAATGCTGGGATAAAAGGCAGGCTGGC  949

seq1  AGGGCCACCCAGCATCTACAG  967
      |||||| |||| |||||||||
seq2  AGGGCC-CCCA-CATCTACAG  968

seq1: chr5_106208030_106208764
seq2: B6Ng01-019H01.g_73_812 (reverse)

seq1  GCCCTAGG-AAATCAACAGAATGTGAACATTACTGTGTCTTGCTG-TTTG  48
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GCCCTAGGAAAATCAACAGAATGTGAACATTACTGTGTCTTGCTGTTTTG  50

seq1  TATT-GGATACATTTTGACAAATGTGCCACACTGATGTGAGACCTTAACA  97
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGATACATTTTGACAAATGTGCCACACTGATGTGAGACCTTAACA  100

seq1  ACAGGGGAAACTGAGTATGAGATAAATTGTAACCC-TTGGTAATACTCCT  146
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGGGGAAACTGAGTATGAGATAAATTGTAACCCTTTGGTAATACTCCT  150

seq1  AACTTTTCTGTAAACCTAAAACTGTATTATATTTTCTTAAATGTTTATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTGTAAACCTAAAACTGTATTATATTTTCTTAAATGTTTATTT  200

seq1  TAAACAGGGGCTCCAGAAACTCACAACACAAGAAAAATTGAAGCAGGAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGGGCTCCAGAAACTCACAACACAAGAAAAATTGAAGCAGGAGG  250

seq1  ATTATGCATTTAAGGCTAGCCTTGTCTAAATAGTGAGACCTCCGTCTCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCATTTAAGGCTAGCCTTGTCTAAATAGTGAGACCTCCGTCTCCT  300

seq1  TGGGTCCCTTTCCCCTGCTCTCATCCAAAATGCTCCAGGAGCATCGTAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCTTTCCCCTGCTCTCATCCAAAATGCTCCAGGAGCATCGTAGG  350

seq1  AGGAGTACACCACACCCTAGGCACCCAGGCCTGGGGCCTCCGTGTTGCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTACACCACACCCTAGGCACCCAGGCCTGGGGCCTCCGTGTTGCAA  400

seq1  GGACTTGTTAGTGAATGCTTAGCTCTGTGGCTGAGTCACCAGGAACTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTTAGTGAATGCTTAGCTCTGTGGCTGAGTCACCAGGAACTGGA  450

seq1  CCAACTCCACCCTCGAGCCACTGTTCAAACCAGAACAGTTCTCTTTCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCACCCTCGAGCCACTGTTCAAACCAGAACAGTTCTCTTTCTGG  500

seq1  TTAGAGTCAAGGTTCTGGTATTCGTAGCCCTGGGCTAGGTACACTTTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCAAGGTTCTGGTATTCGTAGCCCTGGGCTAGGTACACTTTTGT  550

seq1  CTATTTTCCTTAAGTCCTTTGGTCTGGAATCCCAGAAGCCAGAATTCAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTTAAGTCCTTTGGTCTGGAATCCCAGAAGCCAGAATTCAGG  600

seq1  TCTGACTCAGCCTCTCCTCATCCCCTGTATCTCTGCCAGAATCTCCAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCAGCCTCTCCTCATCCCCTGTATCTCTGCCAGAATCTCCAGTT  650

seq1  CCTGGCTCTGTTTCATCCATTATTTCAGTGTTTTTGGTTTTGAAACATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTGTTTCATCCATTATTTCAGTGTTTTTGGTTTTGAAACATTT  700

seq1  TAGACTTGAGGAAAATCACGC-AAACCATGCATGGAATTC  735
      ||||||||||||||||||||| ||| ||||||||||||||
seq2  TAGACTTGAGGAAAATCACGCAAAAACATGCATGGAATTC  740