BAC Information

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BAC

Clone NameB6Ng01-019I10
Chromosome5 (Build37)
Map Location 72,335,176 - 72,428,753
singlet/doubletdoublet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I10.bB6Ng01-019I10.g
ACCDH852586DH852587
length1,156110
definitionDH852586|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I10, 5' end.DH852587|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,335,176 - 72,336,377)(72,428,644 - 72,428,753)
sequence
gaattcaaagaacctatatcactatcattctataggtcattctaaagcac
agctgtaaatgagtataagatttgtatttcactcctgagttggagagaat
aaaaagaagtcaggattatgagcccaaagtgcatcaaatgtgctacctcc
agaaagaaaaaaaaaaagaaaaacaaaaaaaacgaaaaacagcctaccag
gcattttctctcttttgtcttgagatacaagatacaatcctctaactctg
gaaagggtgtccttgcattgcaatctaatttatcattaatacctcactaa
ttatgaagttccctgtatcttctaatatccattatttgccctttggagta
tgtatgtatatctcgcaaaactttcccaagtgcttgacacttgttgccat
ttaataagatatgatttctttttaaatagcactaggaaaagaaggaaata
gaatcatggatcagtggcacagcatcctcagctgattctacaggaggatc
tggaattcaaagttgatattttggtcttctataaagctaagcagtaacta
ggtgctcaagtgagatgggatgaccacaggcatgaaaggaacttggtaga
tgggtcatttagaactaaaatatatgtgccatgagtcataatatccatca
gcattgattaacacttctatttctatagcaaatgtgatacctactgtttt
ttaacattgagttaaataatggctcagactacaatcacagaactgtattc
aaccatggacattagtacagtcatctgttcctaaaaactgcataaaaaga
actagaaaaactgaaacacaattctccaaaagggtactaggattaggggc
ttcatgaaaacaaagagaatagactgaataatgtctatgcagttctccca
atgtttctatgatgatacaattctgtacatagttctacagtcaaacacta
agatagtttcagattaggctagagtaggctgactgttttcttagtgatat
tcatctcaataagaacaacaagtcacatgatcttttttccaaacttaagt
atttgcaattaaagtcatgaactgaaagacgaagaccaagtgtgacactt
accctctaaatggaaacactccatcaggattagaacaagttggactgaga
caaaag
tatttctccactgaattatgtgttaacttgcaaaatattagataatttgg
agggagaggtctggagaaggagagatggagataaagagggaaagggaagg
aaggagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72335176_72336377
seq2: B6Ng01-019I10.b_37_1192

seq1  GAATTCAAAGAACCTATATCACTATCATTCTATAGGTCATTCTAAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACCTATATCACTATCATTCTATAGGTCATTCTAAAGCAC  50

seq1  AGCTGTAAATGAGTATAAGATTTGTATTTCACTCCTGAGTTGGAGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAAATGAGTATAAGATTTGTATTTCACTCCTGAGTTGGAGAGAAT  100

seq1  AAAAAGAAGTCAGGATTATGAGCCCAAAGTGCATCAAATGTGCTACCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGTCAGGATTATGAGCCCAAAGTGCATCAAATGTGCTACCTCC  150

seq1  AGAAAGAAAAAAAAAAAGAAAAACAAAAAAAACGAAAAACAGCCTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAAAAAAAGAAAAACAAAAAAAACGAAAAACAGCCTACCAG  200

seq1  GCATTTTCTCTCTTTTGTCTTGAGATACAAGATACAATCCTCTAACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTCTCTTTTGTCTTGAGATACAAGATACAATCCTCTAACTCTG  250

seq1  GAAAGGGTGTCCTTGCATTGCAATCTAATTTATCATTAATACCTCACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGTCCTTGCATTGCAATCTAATTTATCATTAATACCTCACTAA  300

seq1  TTATGAAGTTCCCTGTATCTTCTAATATCCATTATTTGCCCTTTGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTTCCCTGTATCTTCTAATATCCATTATTTGCCCTTTGGAGTA  350

seq1  TGTATGTATATCTCGCAAAACTTTCCCAAGTGCTTGACACTTGTTGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATCTCGCAAAACTTTCCCAAGTGCTTGACACTTGTTGCCAT  400

seq1  TTAATAAGATATGATTTCTTTTTAAATAGCACTAGGAAAAGAAGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGATATGATTTCTTTTTAAATAGCACTAGGAAAAGAAGGAAATA  450

seq1  GAATCATGGATCAGTGGCACAGCATCCTCAGCTGATTCTACAGGAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGATCAGTGGCACAGCATCCTCAGCTGATTCTACAGGAGGATC  500

seq1  TGGAATTCAAAGTTGATATTTTGGTCTTCTATAAAGCTAAGCAGTAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCAAAGTTGATATTTTGGTCTTCTATAAAGCTAAGCAGTAACTA  550

seq1  GGTGCTCAAGTGAGATGGGATGACCACAGGCATGAAAGGAACTTGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAAGTGAGATGGGATGACCACAGGCATGAAAGGAACTTGGTAGA  600

seq1  TGGGTCATTTAGAACTAAAATATATGTGCCATGAGTCATAATATCCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATTTAGAACTAAAATATATGTGCCATGAGTCATAATATCCATCA  650

seq1  GCATTGATTAACACTTCTATTTCTATAGCAAATGTGATACCTACTG-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCATTGATTAACACTTCTATTTCTATAGCAAATGTGATACCTACTGTTTT  700

seq1  TTAACATTGAGGTTAAATAATGGCTCAGACTACAATCACAGAACTGTATT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGA-GTTAAATAATGGCTCAGACTACAATCACAGAACTGTATT  749

seq1  CAACCATGGACATTAGTACAGTCATCTGTTCCTAAAAACTGCATAAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGGACATTAGTACAGTCATCTGTTCCTAAAAACTGCATAAAAAG  799

seq1  AACTAGAAAAACTGAAACACAATTCTCCAAAAGGGTACTAGGATTAGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAAACTGAAACACAATTCTCCAAAAGGGTACTAGGATTAGGGG  849

seq1  CTTCATGAAAACAAAGAGAATAGACTGAATAATGTCTATGCAGTTCTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAAAACAAAGAGAATAGACTGAATAATGTCTATGCAGTTCTCCC  899

seq1  AATGTTTCTATGATGATACAATTCTGTACATAGTTCTACCAGTTCAAACA  949
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  AATGTTTCTATGATGATACAATTCTGTACATAGTTCTA-CAG-TCAAACA  947

seq1  CTAAGATAGTTTTCAGATTTAGGGCTAGAGTTAGGCTGACATGTTTTTCT  999
      ||||||||| |||||||||   |||||||| ||||||||| || ||||||
seq2  CTAAGATAG-TTTCAGATT--AGGCTAGAG-TAGGCTGAC-TG-TTTTCT  991

seq1  GTAGTGGATATTCATCTCAAATAAAGAAACAACAAAGTCTACATGATCTT  1049
       |||| |||||||||||| |||||   |||||| ||||| |||||||| |
seq2  -TAGT-GATATTCATCTC-AATAA--GAACAAC-AAGTC-ACATGATC-T  1033

seq1  TTTTTCCAAATCTAGAAGTAATTTGCAAATTAAAAGTCCATGAAACTGAA  1099
      ||||||||||  |  |||| ||||||||  | ||||| |||| |||||||
seq2  TTTTTCCAAACTT--AAGT-ATTTGCAA--TTAAAGT-CATG-AACTGAA  1076

seq1  GAGGAACGAAGACCAAAGTGTGGACACTTTACCCCTTCTTAGAATTGGAA  1149
       ||  ||||||||| |||||| ||||| ||||||  |||   || |||||
seq2  -AG--ACGAAGACC-AAGTGT-GACAC-TTACCC--TCT---AAATGGAA  1115

seq1  ACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAA  1199
      ||| |   ||||   |||| |     |||  ||| ||||| |||||||||
seq2  ACACT---CCAT--CAGGATT-----AGAACAAG-TTGGA-CTGAGACAA  1153

seq1  AAG  1202
      |||
seq2  AAG  1156

seq1: chr5_72428644_72428753
seq2: B6Ng01-019I10.g_73_182 (reverse)

seq1  CACTCTCCTTCCTTCCCTTTCCCTCTTTATCTCCATCTCTCCTTCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTTCCTTCCCTTTCCCTCTTTATCTCCATCTCTCCTTCTCCAG  50

seq1  ACCTCTCCCTCCAAATTATCTAATATTTTGCAAGTTAACACATAATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCTCCAAATTATCTAATATTTTGCAAGTTAACACATAATTCAG  100

seq1  TGGAGAAATA  110
      ||||||||||
seq2  TGGAGAAATA  110