BAC Information

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BAC

Clone NameB6Ng01-019M22
Chromosome5 (Build37)
Map Location 44,005,838 - 44,066,272
singlet/doubletdoublet
Overlap geneC1qtnf7, 5730509K17Rik
Upstream geneLOC433883, EG665934, Cpeb2, 4833430A08Rik
Downstream geneFbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M22.bB6Ng01-019M22.g
ACCDH852789DH852790
length5911,045
definitionDH852789|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M22, 5' end.DH852790|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,005,838 - 44,006,435)(44,065,223 - 44,066,272)
sequence
actgaaactctttcatgtccgttgttaaaaagatatgtaaggagactcag
agaaattagaatacaaatcaaagggatgcatttggtggcagagacagcca
taaggaaagaggcatttagatggaggagagaaagaaattatgaaactggg
aaagcttggggtccttctaatcctaatacacaggattaaaaaaagattct
catagatttcctccagtactggagaccttaattagagcctaacgaattaa
actaattaccatctcaggactcagttttcccttccaaaagcaagcctata
gcatggtgaaagtaatcattattcttcaggtatagtaacataagaagccc
aacgttccagatgtgcttacagttttcaggatcaacccaacatattctcc
tagaaaatggggtgccaagactccagagttgggcaggcttaggttgagat
agcagctccgtcactcactagctctgttctctgcaatggagttaataatt
tttagttagtaaaattgttgggggatttaaacaagataattcatgcaaat
aaaacatttaatataagtcctggtatagttgataaataaca
gaattcagtgagcttctgaattttaataaagccatgcaatctatgagatt
tagttagggcatcccaagctgataaaggcaaaggcacagctatgtagact
caatcttggtctgttgttctgggattcttagcagctctaataccatgact
ctttcagttgtcagagccacacttttcttagggttggacttaggtcagca
gcttccaaaggcattgaatgtctaacagtcactctactttcaagctctgc
cacattacaagagtgtaactggaagaatgcagcacatttcccttgtctac
agtgggctcacaatgaacgatgctcactgtatggagaagaacaaatgctg
taaagtccaaggacagacggaggctctttaaaacaaaagtcctcctgtgt
atgtacgtatgtccacgcgaatctgtgtgcctgagtgcaggtatgagttt
gtctctgtgagcccgttataaaccacaggggtttgtcctctccttccacc
ttgttggcaacagggtctcttggtcgtttgcctgtgtgtgtgccaggcta
gctggatggtaagcattgagggattctcctgcctccacctcccataggag
gtgttgacataggggtagtggggttacagatatgtgatactatgcatggc
ttttacacaggttctggggacttgaacttgagttttcacacttgcaaggc
caagagcttttcccactgagccacctcccccagcccccagcccccagctt
cctggaagttcgtgtgcaggggacgggtgtcagtggggtaaagggtgagt
ggcatcacctctgttcttcagtcggggttcctcttctgcttcgtgtctcc
tctgtgccactcccctttgaatctgacatgtctgacatactcatgctttt
tctacttcacttcctactagccacctttctggtatagagaggccccaaac
gctctgttttggcttctagtctgaggctacctaaaaatttgtaccactaa
gttgcataaagtgggtgtaagctccctttcagaagggctttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44005838_44006435
seq2: B6Ng01-019M22.b_42_638

seq1  GAATTCACTGAAACTCTTTCATGTCCGTTGTTTTTTCTATATGTAAGGAG  50
      ||||||||||||||||||||||||||||||||      ||||||||||||
seq2  GAATTCACTGAAACTCTTTCATGTCCGTTGTTAAAAAGATATGTAAGGAG  50

seq1  ACTCAGAGAAATTAGAATACAAATCTAAAGTGATGCATTTGGTGGCAGAG  100
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  ACTCAGAGAAATTAGAATACAAATC-AAAGGGATGCATTTGGTGGCAGAG  99

seq1  ACAGCCATAAGGAAAGAGGCATTTAGATGGAGGAGAGAAAGAAATTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATAAGGAAAGAGGCATTTAGATGGAGGAGAGAAAGAAATTATGA  149

seq1  AACTGGGAAAGCTTGGGGTCCTTCTAATCCTAATACACAGGATTAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAAAGCTTGGGGTCCTTCTAATCCTAATACACAGGATTAAAAAA  199

seq1  AGATTCTCATAGATTTCCTCCAGTACTGGAGACCTTAATTAGAGCCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCATAGATTTCCTCCAGTACTGGAGACCTTAATTAGAGCCTAAC  249

seq1  GAATTAAACTAATTACCATCTCAGGACTCAGTTTTCCCTTCCAAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACTAATTACCATCTCAGGACTCAGTTTTCCCTTCCAAAAGCAA  299

seq1  GCCTATAGCATGGTGAAAGTAATCATTATTCTTCAGGTATAGTAACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGCATGGTGAAAGTAATCATTATTCTTCAGGTATAGTAACATAA  349

seq1  GAAGCCCAACGTTCCAGATGTGCTTACAGTTTTCAGGATCAACCCAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAACGTTCCAGATGTGCTTACAGTTTTCAGGATCAACCCAACAT  399

seq1  ATTCTCCTAGAAAATGGGGTGCCAAGACTCCAGAGTTGGGCAGGCTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTAGAAAATGGGGTGCCAAGACTCCAGAGTTGGGCAGGCTTAGG  449

seq1  TTGAGATAGCAGCTCCGTCACTCACTAGCTCTGTTCTCTGCAATGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGCAGCTCCGTCACTCACTAGCTCTGTTCTCTGCAATGGAGTT  499

seq1  AATAATTTTTAGTTAGTAAAATTGTTGGGGGATTTAAACAAGATAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAGTTAGTAAAATTGTTGGGGGATTTAAACAAGATAATTCA  549

seq1  TGCAAATAAAACATTTAATATAAGTCCTGGTATAGTTGATAAATAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAAAACATTTAATATAAGTCCTGGTATAGTTGATAAATAACA  597

seq1: chr5_44065223_44066272
seq2: B6Ng01-019M22.g_69_1113 (reverse)

seq1  TTTGGAAGCCCTTCTTGAAGGGAGCTT-CACCCACTTTACTGCAACTCTG  49
      |||| ||||||||||  |||||||||| ||||||||||| |||||||  |
seq2  TTTGAAAGCCCTTCTGAAAGGGAGCTTACACCCACTTTA-TGCAACTTAG  49

seq1  TGGTACAATTTTTTAGGGTAGCATCAGACTAGAAGCCAAGACAGAGCGTT  99
      |||||||| |||||| |||||| |||||||||||||||| ||||||||||
seq2  TGGTACAAATTTTTA-GGTAGCCTCAGACTAGAAGCCAAAACAGAGCGTT  98

seq1  TGGGGGCTTCTCTATAACCAGGAAAGGTGGCTAGTAGGAAGTGAAGTAGA  149
      | ||||| ||||||| |||| |||||||||||||||||||||||||||||
seq2  T-GGGGCCTCTCTAT-ACCA-GAAAGGTGGCTAGTAGGAAGTGAAGTAGA  145

seq1  AAAGGCATGAGTAATGTCAGACATGTCAGAATTCAAAGGGGAGTGGCACA  199
      ||| |||||||| |||||||||||||||| ||||||||||||||||||||
seq2  AAAAGCATGAGT-ATGTCAGACATGTCAG-ATTCAAAGGGGAGTGGCACA  193

seq1  GAGGAGACACGAAGCAGAAGAGGAA-CCCGACTGAAGAACAGAGGTGATG  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGGAGACACGAAGCAGAAGAGGAACCCCGACTGAAGAACAGAGGTGATG  243

seq1  CCACTCACCCTTTACCCCACTGACACCCGTCCCCTGCACACGAACTTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACCCTTTACCCCACTGACACCCGTCCCCTGCACACGAACTTCCA  293

seq1  GGAAGCTGGGGGCTGGGGGCTGGGGGAGGTGGCTCAGTGGGAAAAGCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGGGGGCTGGGGGCTGGGGGAGGTGGCTCAGTGGGAAAAGCTCT  343

seq1  TGGCCTTGCAAGTGTGAAAACTCAAGTTCAAGTCCCCAGAACCTGTGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGCAAGTGTGAAAACTCAAGTTCAAGTCCCCAGAACCTGTGTAA  393

seq1  AAGCCATGCATAGTATCACATATCTGTAACCCCACTACCCCTATGTCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCATAGTATCACATATCTGTAACCCCACTACCCCTATGTCAAC  443

seq1  ACCTCCTATGGGAGGTGGAGGCAGGAGAATCCCTCAATGCTTACCATCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTATGGGAGGTGGAGGCAGGAGAATCCCTCAATGCTTACCATCCA  493

seq1  GCTAGCCTGGCACACACACAGGCAAACGACCAAGAGACCCTGTTGCCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGGCACACACACAGGCAAACGACCAAGAGACCCTGTTGCCAAC  543

seq1  AAGGTGGAAGGAGAGGACAAACCCCTGTGGTTTATAACGGGCTCACAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAAGGAGAGGACAAACCCCTGTGGTTTATAACGGGCTCACAGAG  593

seq1  ACAAACTCATACCTGCACTCAGGCACACAGATTCGCGTGGACATACGTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCATACCTGCACTCAGGCACACAGATTCGCGTGGACATACGTAC  643

seq1  ATACACAGGAGGACTTTTGTTTTAAAGAGCCTCCGTCTGTCCTTGGACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGGAGGACTTTTGTTTTAAAGAGCCTCCGTCTGTCCTTGGACTT  693

seq1  TACAGCATTTGTTCTTCTCCATACAGTGAGCATCGTTCATTGTGAGCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATTTGTTCTTCTCCATACAGTGAGCATCGTTCATTGTGAGCCCA  743

seq1  CTGTAGACAAGGGAAATGTGCTGCATTCTTCCAGTTACACTCTTGTAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACAAGGGAAATGTGCTGCATTCTTCCAGTTACACTCTTGTAATG  793

seq1  TGGCAGAGCTTGAAAGTAGAGTGACTGTTAGACATTCAATGCCTTTGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGCTTGAAAGTAGAGTGACTGTTAGACATTCAATGCCTTTGGAA  843

seq1  GCTGCTGACCTAAGTCCAACCCTAAGAAAAGTGTGGCTCTGACAACTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGACCTAAGTCCAACCCTAAGAAAAGTGTGGCTCTGACAACTGAA  893

seq1  AGAGTCATGGTATTAGAGCTGCTAAGAATCCCAGAACAACAGACCAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATGGTATTAGAGCTGCTAAGAATCCCAGAACAACAGACCAAGAT  943

seq1  TGAGTCTACATAGCTGTGCCTTTGCCTTTATCAGCTTGGGATGCCCTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTACATAGCTGTGCCTTTGCCTTTATCAGCTTGGGATGCCCTAAC  993

seq1  TAAATCTCATAGATTGCATGGCTTTATTAAAATTCAGAAGCTCACTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCATAGATTGCATGGCTTTATTAAAATTCAGAAGCTCACTGAAT  1043

seq1  TC  1050
      ||
seq2  TC  1045