BAC Information

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BAC

Clone NameB6Ng01-019P16
Chromosome5 (Build37)
Map Location 88,932,449 - 89,052,149
singlet/doubletdoublet
Overlap geneEnam, Igj, Crlz1, Rufy3
Upstream geneSult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn
Downstream geneGrsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019P16.bB6Ng01-019P16.g
ACCDH852908DH852909
length1,1311,144
definitionDH852908|Mus musculus domesticus DNA, BAC clone: B6Ng01-019P16, 5' end.DH852909|Mus musculus domesticus DNA, BAC clone: B6Ng01-019P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,932,449 - 88,933,596)(89,050,994 - 89,052,149)
sequence
gaattctatccctggaacccacaggaaacgtttccaatatataacccagg
tcctactatagcaccacccgtggaccccagaagttattatgttaataatg
ccataggacaagaagaaagcactctctttccttcatggacctcctgggac
cacaggaatcaagctgagaggcagaaagagagtgagccatattttaacag
aaatgtctgggatcagtcaataaatttacacaaatctaatataccaaacc
atccttattccactacatcccctgctagatttccaaaagatccaacatgg
tttgaaggtgagaatttgaactatgatttgcaaattactagtttaagtcc
accagaaagagaacagttggctttcccagacttcctgcctcaaagttacc
caacaggtcaaaatgaagcacacttatttcaccaaagtcaaagagggtct
tgctgtattggtggctccacaggacataaagacaatgtgctggctctaca
agactacacttcatcctatggtcttccaccaaggaagaaccaagaaacca
gtccagtgcatacagaaagcagttatatcaagtatgcaagacctaacgtt
tccccagcaagcatcctacctagtcaaagaaatatctcagagaacaaact
aactgcagaaagcccaaacccaagtccatttggagatggtgtgcctactg
tgaggaaaaatactccatattctggaaagaatcaactagagacaggaatt
gtggccttttctgaagccagctcttctcagccaaaaaacacgccctgtct
taaaagtgaccttggaggagatcggagggatgttctgaaacaattttttg
aaggcagccagctgagtgaaagaactgctggccttactcctgagcagctc
gtcattggtattcctgataaaggctctggcccagatagcatacaaagtga
agtccaaggaaaagagggtgagatgcagcacaaagccacctaccatcatg
agtgccatgctttggctcattcaaatttcactctctacactggactcatt
aacaacagaagaccaaccctactatggtgctctctccacacccactgaag
gtctacacattgttggttagctactaaggga
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagaacaagccattgctgtt
ctgttcaggaattagggaattctttattattgggcaattaactcaagtgt
ggctctgatcaaagtaaactgaatttataaactcctttattgctcacaat
aaccctgttaactactctttttatctgtacatatcaagaaatggaaagca
ccaaaaacccaaaaccaaaccaaacaaacaaacacccccccccaaaccac
caaaccccacccctcaaaacacaaaaaaataaacaaacaaaatcccctac
ctaactacaagatatagccaggtagaaaataaggaagacagactttgaaa
ctaagtacctgggtttcagggaactattatgaactactctgctaccctgg
ctattcatctatagccttatattaaagtatagccaagacaaggatttgga
aaaaacaaaaatataacttttttatattcacactgagctgcaggagaaac
ttgaaacattaaacctgatcctatgaaggatttattagtaaatttgctta
gggaatcttaagtaacagaactgatctaaagaggcgctgcctcctttaca
actggaagagggtagtaatcaggcctgctagaaacagagagaaaggaaac
tctctataactgaaatattgtgaagtcatgtgaggagttaggggacagac
tgaggaacccagagggacaggactccacaagaagaccagcaaagcaacta
ctcttggaggctctcagagatgaaccaccactaaagagaatacaccatct
gtagcagattgtgcagcttggtcttcattgtgggtcccacaatttgggag
caaggggcttacctggactctttgctgcccatttccacattgaagatatc
ttaggattcagggaacatctagaggtcagttcctgtgtacttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88932449_88933596
seq2: B6Ng01-019P16.b_47_1177

seq1  GAATTCTATCCCTGGAACCCACAGGAAACGTTTCCAATATATAACCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCTGGAACCCACAGGAAACGTTTCCAATATATAACCCAGG  50

seq1  TCCTACTATAGCACCACCCGTGGACCCCAGAAGTTATTATGTTAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTATAGCACCACCCGTGGACCCCAGAAGTTATTATGTTAATAATG  100

seq1  CCATAGGACAAGAAGAAAGCACTCTCTTTCCTTCATGGACCTCCTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGACAAGAAGAAAGCACTCTCTTTCCTTCATGGACCTCCTGGGAC  150

seq1  CACAGGAATCAAGCTGAGAGGCAGAAAGAGAGTGAGCCATATTTTAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATCAAGCTGAGAGGCAGAAAGAGAGTGAGCCATATTTTAACAG  200

seq1  AAATGTCTGGGATCAGTCAATAAATTTACACAAATCTAATATACCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGGGATCAGTCAATAAATTTACACAAATCTAATATACCAAACC  250

seq1  ATCCTTATTCCACTACATCCCCTGCTAGATTTCCAAAAGATCCAACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATTCCACTACATCCCCTGCTAGATTTCCAAAAGATCCAACATGG  300

seq1  TTTGAAGGTGAGAATTTGAACTATGATTTGCAAATTACTAGTTTAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGTGAGAATTTGAACTATGATTTGCAAATTACTAGTTTAAGTCC  350

seq1  ACCAGAAAGAGAACAGTTGGCTTTCCCAGACTTCCTGCCTCAAAGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAGAGAACAGTTGGCTTTCCCAGACTTCCTGCCTCAAAGTTACC  400

seq1  CAACAGGTCAAAATGAAGCACACTTATTTCACCAAAGTCAAAGAGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTCAAAATGAAGCACACTTATTTCACCAAAGTCAAAGAGGGTCT  450

seq1  TGCTGTATTGGTGGCTCCACAGGACATAAAGACAATGTGCTGGCTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTGGTGGCTCCACAGGACATAAAGACAATGTGCTGGCTCTACA  500

seq1  AGACTACACTTCATCCTATGGTCTTCCACCAAGGAAGAACCAAGAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACACTTCATCCTATGGTCTTCCACCAAGGAAGAACCAAGAAACCA  550

seq1  GTCCAGTGCATACAGAAAGCAGTTATATCAAGTATGCAAGACCTAACGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGCATACAGAAAGCAGTTATATCAAGTATGCAAGACCTAACGTT  600

seq1  TCCCCAGCAAGCATCCTACCTAGTCAAAGAAATATCTCAGAGAACAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCAAGCATCCTACCTAGTCAAAGAAATATCTCAGAGAACAAACT  650

seq1  AACTGCAGAAAGCCCAAACCCAAGTCCATTTGGAGATGGTGTGCCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGAAAGCCCAAACCCAAGTCCATTTGGAGATGGTGTGCCTACTG  700

seq1  TGAGGAAAAATACTCCATATTCTGGAAAGAATCAACTAGAGACAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAATACTCCATATTCTGGAAAGAATCAACTAGAGACAGGAATT  750

seq1  GTGGCCTTTTCTGAAGCCAGCTCTTCTCAGCCAAAAAACACGCCCTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTCTGAAGCCAGCTCTTCTCAGCCAAAAAACACGCCCTGTCT  800

seq1  TAAAAGTGACCTTGGAGGAGATCGGAGGGATGTTCTGAAACAATTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGACCTTGGAGGAGATCGGAGGGATGTTCTGAAACAATTTTTTG  850

seq1  AAGGCAGCCAGCTGAGTGAAAGAACTGCTGGCCTTACTCCTGAGCAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCAGCTGAGTGAAAGAACTGCTGGCCTTACTCCTGAGCAGCTC  900

seq1  GTCATTGGTATTCCTGATAAAGGCTCTGGCCCAGATAGCATACAAAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGTATTCCTGATAAAGGCTCTGGCCCAGATAGCATACAAAGTGA  950

seq1  AGTCCAAGGAAAAGAGGGTGAGATGCAGCAACAAAGGCCACCTACCATCA  1000
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  AGTCCAAGGAAAAGAGGGTGAGATGCAGC-ACAAA-GCCACCTACCATCA  998

seq1  TGAAGTTGCCATGCTTTGGCTCCAATTCAAAATTTCACTCTTCTACCACT  1050
      |||   ||||||||||||||||  |||| ||||||||||| |||| ||||
seq2  TGA--GTGCCATGCTTTGGCTC--ATTC-AAATTTCACTC-TCTA-CACT  1041

seq1  GGACCTCCAATTAACAACAGAAGACCAACCCTACTTAATGGTGCTCTCTC  1100
      ||| |||  ||||||||||||||||||||||||||  |||||||||||||
seq2  GGA-CTC--ATTAACAACAGAAGACCAACCCTACT--ATGGTGCTCTCTC  1086

seq1  CACACCCACTGAAAGTCCTAACACATTGGTTGGGTTAGCTACT-AGGGA  1148
      ||||||||||||| |||   ||||||||  | ||||||||||| |||||
seq2  CACACCCACTGAAGGTC--TACACATTG--TTGGTTAGCTACTAAGGGA  1131

seq1: chr5_89050994_89052149
seq2: B6Ng01-019P16.g_69_1212 (reverse)

seq1  ATAAGTACACAGGGGACTTGACCCTCT-GATGTTCCCTGGAACCCCTTAG  49
      |||||||||||  |||  ||| ||||| ||||||||||| | ||      
seq2  ATAAGTACACA--GGAACTGA-CCTCTAGATGTTCCCTGAATCC-----T  42

seq1  AGGATATCCTTCAATGTGG-AATGGGCAGGCAACAGAGTCCAGGTAAGCC  98
      | ||||| ||||||||||| |||||||| |||| ||||||||||||||||
seq2  AAGATAT-CTTCAATGTGGAAATGGGCA-GCAA-AGAGTCCAGGTAAGCC  89

seq1  CC-TGCTCC--AATTGTTGGGGGACCCAC-ATGAAGACCAAGCTGCAC-A  143
      || ||||||  ||||||   ||||||||| |||||||||||||||||| |
seq2  CCTTGCTCCCAAATTGT---GGGACCCACAATGAAGACCAAGCTGCACAA  136

seq1  TCTGCTACAGAT-GTGTATTCTCTTTAGTTGGTGGTTCATCTCTGAGAGC  192
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TCTGCTACAGATGGTGTATTCTCTTTAG-TGGTGGTTCATCTCTGAGAGC  185

seq1  CTCCAAGAGTTAGTTGCCTTTGCTGGTCTTCTTGTGGAGTCCCTGTCCCC  242
      ||||||||| |||||| ||||||||||||||||||||||| ||||| |||
seq2  CTCCAAGAG-TAGTTG-CTTTGCTGGTCTTCTTGTGGAGT-CCTGT-CCC  231

seq1  TCTGGGTTCCTCAGTCTGTCCCCTAACTCCTCACATGACTTCACATAATT  292
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TCTGGGTTCCTCAGTCTGTCCCCTAACTCCTCACATGACTTCACAATATT  281

seq1  TCAGTTATAGAAGAGTTTCCTTTCTCTCTGTTTCTAGCAGGCCTGATTAC  342
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATAG-AGAGTTTCCTTTCTCTCTGTTTCTAGCAGGCCTGATTAC  330

seq1  TACCCTCTTCCAGTTGTAAAGGAGGCAGCGCCTCTTTAGATCAGTTCTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTTCCAGTTGTAAAGGAGGCAGCGCCTCTTTAGATCAGTTCTGT  380

seq1  TACTTAAGATTCCCTAAGCAAATTTACTAATAAATCCTTCATAGGATCAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGATTCCCTAAGCAAATTTACTAATAAATCCTTCATAGGATCAG  430

seq1  GTTTAATGTTTCAAGTTTCTCCTGCAGCTCAGTGTGAATATAAAAAAGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGTTTCAAGTTTCTCCTGCAGCTCAGTGTGAATATAAAAAAGTT  480

seq1  ATATTTTTGTTTTTTCCAAATCCTTGTCTTGGCTATACTTTAATATAAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTTTTTTCCAAATCCTTGTCTTGGCTATACTTTAATATAAGG  530

seq1  CTATAGATGAATAGCCAGGGTAGCAGAGTAGTTCATAATAGTTCCCTGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATGAATAGCCAGGGTAGCAGAGTAGTTCATAATAGTTCCCTGAA  580

seq1  ACCCAGGTACTTAGTTTCAAAGTCTGTCTTCCTTATTTTCTACCTGGCTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTACTTAGTTTCAAAGTCTGTCTTCCTTATTTTCTACCTGGCTA  630

seq1  TATCTTGTAGTTAGGTAGGGGATTTTGTTTGTTTATTTTTTTGTGTTTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTAGTTAGGTAGGGGATTTTGTTTGTTTATTTTTTTGTGTTTTG  680

seq1  AGGGGTGGGGTTTGGTGGTTTGGGGGGGGGTGTTTGTTTGTTTGGTTTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGGGTTTGGTGGTTTGGGGGGGGGTGTTTGTTTGTTTGGTTTGG  730

seq1  TTTTGGGTTTTTGGTGCTTTCCATTTCTTGATATGTACAGATAAAAAGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTTTGGTGCTTTCCATTTCTTGATATGTACAGATAAAAAGAG  780

seq1  TAGTTAACAGGGTTATTGTGAGCAATAAAGGAGTTTATAAATTCAGTTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACAGGGTTATTGTGAGCAATAAAGGAGTTTATAAATTCAGTTTA  830

seq1  CTTTGATCAGAGCCACACTTGAGTTAATTGCCCAATAATAAAGAATTCCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCAGAGCCACACTTGAGTTAATTGCCCAATAATAAAGAATTCCC  880

seq1  TAATTCCTGAACAGAACAGCAATGGCTTGTTCTGTAAGATCGAGAATTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTGAACAGAACAGCAATGGCTTGTTCTGTAAGATCGAGAATTGA  930

seq1  CAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCG  980

seq1  TCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTAT  1030

seq1  CCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAA  1080

seq1  GGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAAC  1130

seq1  TGAACAAAGAATTC  1156
      ||||||||||||||
seq2  TGAACAAAGAATTC  1144