BAC Information

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BAC

Clone NameB6Ng01-019P17
Chromosome5 (Build37)
Map Location 120,318,231 - 120,460,961
singlet/doubletdoublet
Overlap geneTbx5
Upstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945
Downstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019P17.bB6Ng01-019P17.g
ACCDH852910DH852911
length1,0061,055
definitionDH852910|Mus musculus domesticus DNA, BAC clone: B6Ng01-019P17, 5' end.DH852911|Mus musculus domesticus DNA, BAC clone: B6Ng01-019P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,318,231 - 120,319,233)(120,459,902 - 120,460,961)
sequence
gaattccacggagcacgctggtctgctcccttgtaaattccctccgccaa
tatttttggaggcttattttctttaattaaaaaaaataaccattgccgtt
aaacatataaaaccccaaatgatttctcccttcctcctggagtgctgatg
ggccagcatttgacctcagcagactcaggctgagttgccggtgagatctg
atggctttggtaccgttttattattgtgctttttttcttttattcttctt
ggtttttccattacacggtttgaaccacaaagccagtgatcttaagctaa
tgccatttcacttagcctcctggctgactggtggctgtgtggctcacatc
ccagctgggatccaagatggcatagacccccaggggaagcttagctgaga
gactcttgggtgtcatgagtggtggatatgagtgtcacggaaatttggca
gctcctgagttccttgcctggctacagtgatatgtttcctcataacagaa
gcagaggcagagagtagaggagggtatatccctggtgtataaaaaggggt
tttcattccaggcctctgctttagacattggaaggagtgcttacataata
ggtgagcttgaattctttctggctgcatcttgaccagttctggatctttg
ggcaagtttgactaatctctgggattcagtttcctaatctgtacaatggg
cacaataactataacctcatcatagcatcatgggaagggtgccatgggct
cttgctggtggctgtgcatatgggacttgtgtccccatatgctttgtatt
tttattctatttgttggcattcaggtattaaaactcagggccttgtatgt
cccatgggaatactctacttactaagatacacccctagcctgttattaac
tagctaacaaattgggggcaccgggagttgaacccatattcttaagcttg
ccaggcaagtatctgttactgagccacatccatatctacctatctatcta
tctatc
gaattccctggactcataccacagagggccagagacttgggagccaaccc
agagaggctccagcattgtttgctgacctgtgttcaaggacagtgaagtg
ggagccatgtcataaaaccccactgagaggaaagtaagtatccttgttcc
agggatggcagtgagaactttgagaatggtatggtggtttgaatatgctt
gacccatgcgaagtggcactatcaggaagtgtgggcctgtaggagtgtgt
gtggacttgttggaggaagtgcatcattaaagggaggggctttgaaactt
tgtccagtatggaagagacacttttcctgttggcctacagaagagccagt
ttttcttggttgccttcagagatgcagagctctcagctccttctccagta
ccatgtctgcctggaaaatgccatgcttcctgccatgatgataatggact
gaacctttgaaattgtaagctagccccagttaaatgttttcctttataag
agttgctttggtcatggcatctcttcacagcagtacaaccctaacaaaga
caaatggctactctttgcattggacaaggggcaggggggttatagtgcaa
agtttgaggcacatgtgagtgaccactgtccttattcccacagagaacct
ggagatgagctgcaggaaagttgtgtcatctcgaaacaagctagagtcag
aggagggagcctccactgagtcttcgggagaaatctgagatgaggtccca
aaatgacacagcctaggggtctggattggaataattctctgccagtttaa
aaaaaaacaaaaaacaaaactaggagccaggaaaaccctggtttaactgg
gtggcagagagaatatcagacactagtttaataatgtgtttattaagaga
ggggaactcatgaagacacaaaatgaccaagctggaaatatagctccttt
ccagagaatgggtcttcaatctctggggtcatctttaaagctctagccac
taagcctctgttttaaactaccgaacttttgtctcaattctaatgggtaa
aaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120318231_120319233
seq2: B6Ng01-019P17.b_44_1049

seq1  GAATTCCACGGAGCACGCTGGTCTGCTCCCTTGTAAATTCCCTCCGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAGCACGCTGGTCTGCTCCCTTGTAAATTCCCTCCGCCAA  50

seq1  TATTTTTGGAGGCTTATTTTCTTTAATTAAAAAAAATAACCATTGCCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGGAGGCTTATTTTCTTTAATTAAAAAAAATAACCATTGCCGTT  100

seq1  AAACATATAAAACCCCAAATGATTTCTCCCTTCCTCCTGGAGTGCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAAAACCCCAAATGATTTCTCCCTTCCTCCTGGAGTGCTGATG  150

seq1  GGCCAGCATTTGACCTCAGCAGACTCAGGCTGAGTTGCCGGTGAGATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATTTGACCTCAGCAGACTCAGGCTGAGTTGCCGGTGAGATCTG  200

seq1  ATGGCTTTGGTACCGTTTTATTATTGTGCTTTTTTTCTTTTATTCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTGGTACCGTTTTATTATTGTGCTTTTTTTCTTTTATTCTTCTT  250

seq1  GGTTTTTCCATTACACGGTTTGAACCACAAAGCCAGTGATCTTAAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCCATTACACGGTTTGAACCACAAAGCCAGTGATCTTAAGCTAA  300

seq1  TGCCATTTCACTTAGCCTCCTGGCTGACTGGTGGCTGTGTGGCTCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCACTTAGCCTCCTGGCTGACTGGTGGCTGTGTGGCTCACATC  350

seq1  CCAGCTGGGATCCAAGATGGCATAGACCCCCAGGGGAAGCTTAGCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGGATCCAAGATGGCATAGACCCCCAGGGGAAGCTTAGCTGAGA  400

seq1  GACTCTTGGGTGTCATGAGTGGTGGATATGAGTGTCACGGAAATTTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGGGTGTCATGAGTGGTGGATATGAGTGTCACGGAAATTTGGCA  450

seq1  GCTCCTGAGTTCCTTGCCTGGCTACAGTGATATGTTTCCTCATAACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGAGTTCCTTGCCTGGCTACAGTGATATGTTTCCTCATAACAGAA  500

seq1  GCAGAGGCAGAGAGTAGAGGAGGGTATATCCCTGGTGTATAAAAAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAGAGTAGAGGAGGGTATATCCCTGGTGTATAAAAAGGGGT  550

seq1  TTTCATTCCAGGCCTCTGCTTTAGACATTGGAAGGAGTGCTTACATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCAGGCCTCTGCTTTAGACATTGGAAGGAGTGCTTACATAATA  600

seq1  GGTGAGCTTGAATTCTTTCTGGCTGCATCTTGACCAGTTCTGGATCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTTGAATTCTTTCTGGCTGCATCTTGACCAGTTCTGGATCTTTG  650

seq1  GGCAAG-TTGACTAATCTCTGGGATTCAGTTTCCTAATCTGTACAATGGG  699
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTTGACTAATCTCTGGGATTCAGTTTCCTAATCTGTACAATGGG  700

seq1  CACAATAACTATAACCTCATCATAGCATCATGGGAAGGGTGCCATGGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACTATAACCTCATCATAGCATCATGGGAAGGGTGCCATGGGCT  750

seq1  CTTGCTGGTGGCTGTGCATATGGGACTTGTGTCCCCATATGCTTTGTA-T  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGCTGGTGGCTGTGCATATGGGACTTGTGTCCCCATATGCTTTGTATT  800

seq1  TTTATTCTATTTGTTGGCATTCAGGTATTAAAACTCAGGGCCTTGTATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATTTGTTGGCATTCAGGTATTAAAACTCAGGGCCTTGTATGT  850

seq1  CCCATGGGAATACTCTAC-TACTAAGATACACCCCTAGCCTGTTATTAAC  897
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCATGGGAATACTCTACTTACTAAGATACACCCCTAGCCTGTTATTAAC  900

seq1  TAGCTAACAAATT-GGGGCACCGGGAGTTGAACCCAGATCCTTAAGCTTG  946
      ||||||||||||| |||||||||||||||||||||| || ||||||||||
seq2  TAGCTAACAAATTGGGGGCACCGGGAGTTGAACCCATATTCTTAAGCTTG  950

seq1  CCAGGCAAGTACTCTGCTACTGAGCCACATCCATATCTACCTATCTATCT  996
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CCAGGCAAGTA-TCTGTTACTGAGCCACATCCATATCTACCTATCTATCT  999

seq1  ATCTATC  1003
      |||||||
seq2  ATCTATC  1006

seq1: chr5_120459902_120460961
seq2: B6Ng01-019P17.g_69_1123 (reverse)

seq1  --------CCCTTTTGAATTGAGACAAAAGTCTGGTAGTTTAAAACAGAG  42
              ||| || ||||||||||||||||  |||||||||||||||||
seq2  CCCTTTTACCCATTAGAATTGAGACAAAAGTTCGGTAGTTTAAAACAGAG  50

seq1  GCCTTAGTGGCTTAAGACGCTTTAAAGACTGAACCCCAGAGACTTGAAGA  92
      | ||||||||||  ||| |||||||||| || |||||||||| |||||||
seq2  G-CTTAGTGGCT--AGA-GCTTTAAAGA-TG-ACCCCAGAGA-TTGAAGA  93

seq1  ACCCCATTCTCCTGGAAAAGAGACTATATTTTCCAGCTTGGTCATTTTGT  142
        |||||||| ||||||| ||| ||||| |||||||||||||||||||||
seq2  --CCCATTCT-CTGGAAAGGAG-CTATA-TTTCCAGCTTGGTCATTTTGT  138

seq1  GTCTTCATGAGTTCCCCTCTCTTAATAAACACATTTTTAAACTAGTGTCT  192
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCTTCATGAGTTCCCCTCTCTTAATAAACACATTATTAAACTAGTGTCT  188

seq1  GATATTTCTCTCCTGCCA-CCAGTTAAACCAGGGTTTTCCTGGCTCCTAG  241
      |||| |||||| |||||| |||||||||||||||||||||||||||||||
seq2  GATA-TTCTCT-CTGCCACCCAGTTAAACCAGGGTTTTCCTGGCTCCTAG  236

seq1  TTTTGTTTTTTGTTTTTTTTTAAACTGGCAGAGAATTATTCCAATCCAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTGTTTTTTTTTAAACTGGCAGAGAATTATTCCAATCCAGA  286

seq1  CCCCTAGGCTGTGTCATTTTGGGACCTCATCTCAGATTTCTCCCGAAGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGCTGTGTCATTTTGGGACCTCATCTCAGATTTCTCCCGAAGAC  336

seq1  TCAGTGGAGGCTCCCTCCTCTGACTCTAGCTTGTTTCGAGATGACACAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGAGGCTCCCTCCTCTGACTCTAGCTTGTTTCGAGATGACACAAC  386

seq1  TTTCCTGCAGCTCATCTCCAGGTTCTCTGTGGGAATAAGGACAGTGGTCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCAGCTCATCTCCAGGTTCTCTGTGGGAATAAGGACAGTGGTCA  436

seq1  CTCACATGTGCCTCAAACTTTGCACTATAACCCCCCTGCCCCTTGTCCAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTGCCTCAAACTTTGCACTATAACCCCCCTGCCCCTTGTCCAA  486

seq1  TGCAAAGAGTAGCCATTTGTCTTTGTTAGGGTTGTACTGCTGTGAAGAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAGTAGCCATTTGTCTTTGTTAGGGTTGTACTGCTGTGAAGAGA  536

seq1  TGCCATGACCAAAGCAACTCTTATAAAGGAAAACATTTAACTGGGGCTAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGACCAAAGCAACTCTTATAAAGGAAAACATTTAACTGGGGCTAG  586

seq1  CTTACAATTTCAAAGGTTCAGTCCATTATCATCATGGCAGGAAGCATGGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATTTCAAAGGTTCAGTCCATTATCATCATGGCAGGAAGCATGGC  636

seq1  ATTTTCCAGGCAGACATGGTACTGGAGAAGGAGCTGAGAGCTCTGCATCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAGGCAGACATGGTACTGGAGAAGGAGCTGAGAGCTCTGCATCT  686

seq1  CTGAAGGCAACCAAGAAAAACTGGCTCTTCTGTAGGCCAACAGGAAAAGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCAACCAAGAAAAACTGGCTCTTCTGTAGGCCAACAGGAAAAGT  736

seq1  GTCTCTTCCATACTGGACAAAGTTTCAAAGCCCCTCCCTTTAATGATGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCCATACTGGACAAAGTTTCAAAGCCCCTCCCTTTAATGATGCA  786

seq1  CTTCCTCCAACAAGTCCACACACACTCCTACAGGCCCACACTTCCTGATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAACAAGTCCACACACACTCCTACAGGCCCACACTTCCTGATA  836

seq1  GTGCCACTTCGCATGGGTCAAGCATATTCAAACCACCATACCATTCTCAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTCGCATGGGTCAAGCATATTCAAACCACCATACCATTCTCAA  886

seq1  AGTTCTCACTGCCATCCCTGGAACAAGGATACTTACTTTCCTCTCAGTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCACTGCCATCCCTGGAACAAGGATACTTACTTTCCTCTCAGTGG  936

seq1  GGTTTTATGACATGGCTCCCACTTCACTGTCCTTGAACACAGGTCAGCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGACATGGCTCCCACTTCACTGTCCTTGAACACAGGTCAGCAA  986

seq1  ACAATGCTGGAGCCTCTCTGGGTTGGCTCCCAAGTCTCTGGCCCTCTGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTGGAGCCTCTCTGGGTTGGCTCCCAAGTCTCTGGCCCTCTGTG  1036

seq1  GTATGAGTCCAGGGAATTC  1060
      |||||||||||||||||||
seq2  GTATGAGTCCAGGGAATTC  1055