BAC Information

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BAC

Clone NameB6Ng01-020A09
Chromosome5 (Build37)
Map Location 23,145,055 - 23,293,239
singlet/doubletdoublet
Overlap genePus7
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream geneRint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A09.bB6Ng01-020A09.g
ACCDH852937DH852938
length707896
definitionDH852937|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A09, 5' end.DH852938|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,145,055 - 23,145,761)(23,292,325 - 23,293,239)
sequence
gaattctctggatgtggaagagcaaagttcagtcatatctggtccacaca
gtcacatatctggtccacacagtcacatatctggtccacacagtcacata
tctggtccacacagtcacatatctggtccacacagccacatatctggtcc
acacaaccacatatctggtccacacagccacatatctggtccacacagcc
acatatctggtccacacagccacatatctggtccacacagccacatatct
ggtccacacagccacatatctggtccacacagtcacatatctggttcaca
cagccacatatctggtccacacagtcacatatctggttcacacagtcaca
acagtaaaatgatgaagcaaagcatcctccacaataacgaacggagggct
ctggaccaggacacacagggctgatttacgtggccccaccctccagtaat
gcttgcattaagggaagctgtcatcaacctacttgcaaaccccaacattc
catttctcagaaagtaaatttacttgagactgatctagtccaattccaat
aaattctagaatacaatgaaaactataaacaaatttgtaaaataatcact
tcaagccacaagcaagaggcatccttcaaaaatgaaatacaacaaagaga
aacctttacgcatgaatcaaattaaaattaatctgtatgatatatgtggg
ggggggg
gaattcaaggaggggagaggaaggaggggaggagaaaatactcatgatac
ccttaggatggtgagccacaagtcgggagcggaggcgggaagattgccac
tagtccctgccagcttgctctataaagtgaattcggtatcagctagaaca
acacctatctcaaaatggctcagcgcataaaagcatttgccaccaagaca
ccggagttccatacttggcccacgtggtactaggtaggagtgtcaaagtg
ctctttctatatttcacagtcttagagagacaaaagtctacgtgcaaagg
taactaatatttatttatttatttatttatttatttatttatttatttat
ttatttttggtttttcgagacaaggtttctctgtgtagccctggctgtct
tggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctg
cctcagcctgtaactaatagttattactgtttaagcgttgtacagaaaaa
aatactccatttaaaaggtagggactaagtaacctcttttgtagactcaa
gagtaagctttgaaggacagctagacaaaaggaacactccttcatatatt
ttcgaactggaaggtccagatctgtttgtaggagggttgaaacattctgg
gagtcagacagagaaagagcactcaaatctggcatccagtttgctgggca
aagccccctaaacctctactgttttccagggaggaggaactgaattacta
gaagcaagggataggtagagaacatggaaatttgacaggcaaaccctgga
aggcatgcctttgagaccaaacaaatggggagaaacagaaaaaaaataca
cagcaaacaacatcaaatctttagagaaacgaactactccgtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23145055_23145761
seq2: B6Ng01-020A09.b_43_749

seq1  GAATTCTCTGGATGTGGAAGAGCAAAGTTCAGTCATATCTGGTCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATGTGGAAGAGCAAAGTTCAGTCATATCTGGTCCACACA  50

seq1  GTCACATATCTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATATCTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATA  100

seq1  TCTGGTCCACACAGTCACATATCTGGTCCACACAGCCACATATCTGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCACACAGTCACATATCTGGTCCACACAGCCACATATCTGGTCC  150

seq1  ACACAACCACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACCACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCC  200

seq1  ACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCCACATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCCACATATCT  250

seq1  GGTCCACACAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACACAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACA  300

seq1  CAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACACAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACACAGTCACA  350

seq1  ACAGTAAAATGATGAAGCAAAGCATCCTCCACAATAACGAACGGAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAATGATGAAGCAAAGCATCCTCCACAATAACGAACGGAGGGCT  400

seq1  CTGGACCAGGACACACAGGGCTGATTTACGTGGCCCCACCCTCCAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAGGACACACAGGGCTGATTTACGTGGCCCCACCCTCCAGTAAT  450

seq1  GCTTGCATTAAGGGAAGCTGTCATCAACCTACTTGCAAACCCCAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATTAAGGGAAGCTGTCATCAACCTACTTGCAAACCCCAACATTC  500

seq1  CATTTCTCAGAAAGTAAATTTACTTGAGACTGATCTAGTCCAATTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAGAAAGTAAATTTACTTGAGACTGATCTAGTCCAATTCCAAT  550

seq1  AAATTCTAGAATACAATGAAAACTATAAACAAATTTGTAAAATAATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAATACAATGAAAACTATAAACAAATTTGTAAAATAATCACT  600

seq1  TCAAGCCACAAGCAAGAGGCATCCTTCAAAAATGAAATACAACAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACAAGCAAGAGGCATCCTTCAAAAATGAAATACAACAAAGAGA  650

seq1  AACCTTTACGCATGAATCAAATTAAAATTAATCTGTATGATATATGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTACGCATGAATCAAATTAAAATTAATCTGTATGATATATGTGGG  700

seq1  GGGGGGG  707
      |||||||
seq2  GGGGGGG  707

seq1: chr5_23292325_23293239
seq2: B6Ng01-020A09.g_68_963 (reverse)

seq1  TCTCACGGAGTAGTTTCTGTTTCCTCTAAAGATTTTTGTTTGTTTGTTTG  50
      |||||||||||||||   |||| |||||||||  |||| |   |||||||
seq2  TCTCACGGAGTAGTT--CGTTT-CTCTAAAGA--TTTGAT--GTTGTTTG  43

seq1  CTTGTTGTTTTTTTTTTTTCTGTTTTCTCCCCATTTGTTTGGTCTCAAAG  100
      |    ||| | ||||||||||| |||||||||||||||||||||||||||
seq2  C----TGTGTATTTTTTTTCTG-TTTCTCCCCATTTGTTTGGTCTCAAAG  88

seq1  GCATTGCCTTCCAGGGTTTGCCTGTCAAATTTCCATGTTCTCTACCTATC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TGCCTTCCAGGGTTTGCCTGTCAAATTTCCATGTTCTCTACCTATC  137

seq1  CCTTGCTTCTAAGTAATTCAGTTCCTCCTCCCTGGAAAACAGTAGAGGTT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCT-AGTAATTCAGTTCCTCCTCCCTGGAAAACAGTAGAGGTT  186

seq1  TAGGGGGCTTTGCCCAGCAAACTGGATGCCAGATTTTGAGTGCTCTTTCT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGGGGGCTTTGCCCAGCAAACTGGATGCCAGA-TTTGAGTGCTCTTTCT  235

seq1  CTGTCTGACTCCCAGAATGTTTCAACCCTCCTACAAACAGATCTGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGACTCCCAGAATGTTTCAACCCTCCTACAAACAGATCTGGACCT  285

seq1  TCCAGTTCGAAAATATATGAAGGAGTGTTCCTTTTGTCTAGCTGTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCGAAAATATATGAAGGAGTGTTCCTTTTGTCTAGCTGTCCTTC  335

seq1  AAAGCTTACTCTTGAGTCTACAAAAGAGGTTACTTAGTCCCTACCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTACTCTTGAGTCTACAAAAGAGGTTACTTAGTCCCTACCTTTTA  385

seq1  AATGGAGTATTTTTTTCTGTACAACGCTTAAACAGTAATAACTATTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTATTTTTTTCTGTACAACGCTTAAACAGTAATAACTATTAGTT  435

seq1  ACAGGCTGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG  485

seq1  AGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAA  535

seq1  ACCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA  600
      |||||    |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAA----AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA  581

seq1  AATAAATATTAGTTACCTTTGCACGTAGACTTTTGTCTCTCTAAGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTAGTTACCTTTGCACGTAGACTTTTGTCTCTCTAAGACTGT  631

seq1  GAAATATAGAAAGAGCACTTTGACACTCCTACCTAGTACCACGTGGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAGAAAGAGCACTTTGACACTCCTACCTAGTACCACGTGGGCCA  681

seq1  AGTATGGAACTCCGGTGTCTTGGTGGCAAATGCTTTTATGCGCTGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAACTCCGGTGTCTTGGTGGCAAATGCTTTTATGCGCTGAGCCA  731

seq1  TTTTGAGATAGGTGTTGTTCTAGCTGATACCGAATTCACTTTATAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATAGGTGTTGTTCTAGCTGATACCGAATTCACTTTATAGAGCA  781

seq1  AGCTGGCAGGGACTAGTGGCAATCTTCCCGCCTCCGCTCCCGACTTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAGGGACTAGTGGCAATCTTCCCGCCTCCGCTCCCGACTTGTGG  831

seq1  CTCACCATCCTAAGGGTATCATGAGTATTTTCTCCTCCCCTCCTTCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCCTAAGGGTATCATGAGTATTTTCTCCTCCCCTCCTTCCTCT  881

seq1  CCCCTCCTTGAATTC  915
      |||||||||||||||
seq2  CCCCTCCTTGAATTC  896