BAC Information

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BAC

Clone NameB6Ng01-020E06
Chromosome5 (Build37)
Map Location 50,354,511 - 50,355,547
singlet/doubletsinglet
Overlap geneGpr125
Upstream geneLOC100041668, LOC100041659, EG433885, LOC666223
Downstream geneEG637307, LOC100041015, LOC242987, EG624734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E06.bB6Ng01-020E06.g
ACCDH853115DH853116
length1,1601,023
definitionDH853115|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E06, 5' end.DH853116|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
tggagagctagagaagtagccaagagctaaagggatctgcaccctatagt
ggaacaacattatgagctaccagtacccggagctcttgactcctagctgc
tatatatcaagatgctatcgcatcctggaaaggaaggccatggactgcaa
ctttatatgccagtacagggattcaagcaaaaggggatggtgggcacggg
gatggggtgt
gaattctgctcatctagcacaatcagtccattcacaactctttttatcgt
aacgggcaggaaggagatgtaactccgaactcattttgtcttttgttgag
agacaaaattaattcttaagatgaagatcaatgacacaggatgtcaaaaa
acttcaagaagctagtattttatagagagctgatacctccttcttgctct
gcacataaccatgagaccctctcactccttctgagcttgagaggcacagt
ggagacgctgatgctcatagcactgagaaccagtcagcttgcaagtcttc
cctttgacctctcaaaggccacaccaatgtttcttgctgttgtaagttac
gactgtggttcaactaaagcaaacacaataggtaatgaacacctgcgata
caacaaaggctcacactacctcagcatcggtcgtggaggagcgggtggct
catctggatcctggcatctcttggctttcttggtgacttgtttatagata
tttctagcagtgactccaacccacaataccgtggcaagggtagaataatg
aagaatgatcccaacctacaaagaagattggacaatgtatgacgattaaa
agaacaaatgtttcctcgagtctgattaaaatgcagtaggaaggcgactc
cttcacgtgctcatgaaggaatcgaggttcttaacagaagatcaatttat
cacttggttcaccttctaactgccacctcgaggagaagcagagaagggag
gggagggacacacctgggctctgcctgagagtcgccatatttcagaagaa
agtgatgtaacaaggtaaggcttaagcaggtaaactcagaagtaaaacac
tttccctcagtttaggactgcaccatttccctacccgactgtgatttcag
ccaatcacgcacgatccagcctcagctctgttatatgcttccaagagtac
ttattgtgattattgtaaggccgggctgaagaaggctgtggactctggat
ttctgctcttcattaatagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50354511_50355547
seq2: B6Ng01-020E06.g_66_1088

seq1  GAATTCTGCTCATCTAGCACAATCAGTCCATTCACAACTCTTTTTATCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCATCTAGCACAATCAGTCCATTCACAACTCTTTTTATCGT  50

seq1  AACGGGCAGGAAGGAGATGTAACTCCGAACTCATTTTGTCTTTTGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGCAGGAAGGAGATGTAACTCCGAACTCATTTTGTCTTTTGTTGAG  100

seq1  AGACAAAATTAATTCTTAAGATGAAGATCAATGACACAGGATGTCAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATTAATTCTTAAGATGAAGATCAATGACACAGGATGTCAAAAA  150

seq1  ACTTCAAGAAGCTAGTATTTTATAGAGAGCTGATACCTCCTTCTTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGAAGCTAGTATTTTATAGAGAGCTGATACCTCCTTCTTGCTCT  200

seq1  GCACATAACCATGAGACCCTCTCACTCCTTCTGAGCTTGAGAGGCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAACCATGAGACCCTCTCACTCCTTCTGAGCTTGAGAGGCACAGT  250

seq1  GGAGACGCTGATGCTCATAGCACTGAGAACCAGTCAGCTTGCAAGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGCTGATGCTCATAGCACTGAGAACCAGTCAGCTTGCAAGTCTTC  300

seq1  CCTTTGACCTCTCAAAGGCCACACCAATGTTTCTTGCTGTTGTAAGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACCTCTCAAAGGCCACACCAATGTTTCTTGCTGTTGTAAGTTAC  350

seq1  GACTGTGGTTCAACTAAAGCAAACACAATAGGTAATGAACACCTGCGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGTTCAACTAAAGCAAACACAATAGGTAATGAACACCTGCGATA  400

seq1  CAACAAAGGCTCACACTACCTCAGCATCGGTCGTGGAGGAGCGGGTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGGCTCACACTACCTCAGCATCGGTCGTGGAGGAGCGGGTGGCT  450

seq1  CATCTGGATCCTGGCATCTCTTGGCTTTCTTGGTGACTTGTTTATAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGATCCTGGCATCTCTTGGCTTTCTTGGTGACTTGTTTATAGATA  500

seq1  TTTCTAGCAGTGACTCCAACCCACAATACCGTGGCAAGGGTAGAATAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCAGTGACTCCAACCCACAATACCGTGGCAAGGGTAGAATAATG  550

seq1  AAGAATGATCCCAACCTACAAAGAAGATTGGACAATGTATGACGATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATCCCAACCTACAAAGAAGATTGGACAATGTATGACGATTAAA  600

seq1  AGAACAAATGTTTCCTCGAGTCTGATTAAAATGCAGTAGGAAGGCGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATGTTTCCTCGAGTCTGATTAAAATGCAGTAGGAAGGCGACTC  650

seq1  CTTCACGTGCTCATGAAGGAATCGAGGTTCTTAACAGAAGATCAATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGTGCTCATGAAGGAATCGAGGTTCTTAACAGAAGATCAATTTAT  700

seq1  CACTTGGTTCACCTTCTAACTGCCACCTCGAGGAGAAGCAGAGAAGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTTGGTTCACCTTCTAACTGCCACCTCGAGGAGAAGCAGAGAA-GGGA  749

seq1  GGGGAGGGACACACCTGGGCTCTGCCTGAGAGTCGCCATATTTCAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGGAGGGACACACCTGGGCTCTGCCTGAGAGTCGCCATATTTCA-GAAG  798

seq1  AAAGTGATGTAACAAGGTAAGGCTTAAGCAGGTAAACTCAGAAGTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATGTAACAAGGTAAGGCTTAAGCAGGTAAACTCAGAAGTAAAAC  848

seq1  ACTTTCCCTCAGTTTAGGACTGCACCCATTTCCCTACCCGACTGTGATTT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTTTCCCTCAGTTTAGGACTGCA-CCATTTCCCTACCCGACTGTGATTT  897

seq1  CAGCCAAATCACGCACGATCTCAAGCCCTCAGCTCTGTTATATTGCTTCC  950
      ||||| |||||||||||||| ||   |||||||||||||||| ||||| |
seq2  CAGCC-AATCACGCACGATC-CA--GCCTCAGCTCTGTTATA-TGCTT-C  941

seq1  CAAGAGTACTTATTGTGATTATTGTAAGGGCCGTGCTGAAGAAAGCCTGT  1000
      ||||||||||||||||||||||||||| ||||| ||||||| ||| ||||
seq2  CAAGAGTACTTATTGTGATTATTGTAA-GGCCGGGCTGAAG-AAGGCTGT  989

seq1  GAACCCTGGATTTCTGTCTCTTCAATTTAATAGTGGG  1037
      | || ||||||||||| |||||||  |||||||||||
seq2  GGACTCTGGATTTCTG-CTCTTCA--TTAATAGTGGG  1023