BAC Information

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BAC

Clone NameB6Ng01-020G02
Chromosome5 (Build37)16 (Build37)
Map Location 18,084,511 - 18,084,57579,348,544 - 79,349,531
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020G02.bB6Ng01-020G02.g
ACCDH853196DH853197
length409974
definitionDH853196|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G02, 5' end.DH853197|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(79,348,544 - 79,349,531)
sequence
gaattctcacctgaggaatacccaatggctgagaagcatctgaaaaaatg
ttctgcatccttaataatcaggtaaatgcaaatcaaagcaatcctgagat
tcctcctcacaccaggcttaatggctaagttcaaaaactcatgtgacagc
agatgctggcaaggatatggagaaagaggaacacttcttcattgttggtg
ggattgcaagcttataccaccgatctagaaatcattctggcggttcctta
aaaaaattttacttagtactactgggggatccagtaatacctctcctggg
cttatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataataaccagaagctggaaagaacccaga
tatccctca
gaattctgctgagatggtaaaagagtaatgggttggtaggaacatctggt
gcaaaggcacttgctctctcttttcatttctgttagttttacttaaaaga
taggtccaacaaaatcaggttataaatataactgtctcatcaacaagatg
acgaagttgataaggatcccaagagtgaataaagatgctgactacttggg
caaagtcaaatggattaagctgtcttcatgctacgactttaaattgatgt
gtacgaaattaccaagtgctgttgcaacagtgtttcaaacatcctagccg
ggtgatgtttattctggggttaaacacaagaagggtaaatgtaggcagat
ggattctgaagaaatcaaaagcttgtttaaatgcaaatttttctacctag
aaaaaccattctgagaagaaatgatatctaaataaattttctttcaacag
aatgctttctttttccagtttgaaagaggcgaactcaggtgtctcatgga
gatttgctaaagaactaaaggtgggtacctttgcaaacggaatttcagtg
cctctaaaagcctactctctgaagcactttacttagctgtggagctgaac
ctgcaatcaaattacaatctctttgaattttgcatactcatcttgacttc
tagatgagttgatgctactagacatcagtgtccaatttgggctcgcgctt
atgatccactaaactcctccgatcacaaataactacttatgagatgaatt
gatggaaaaatgcttttttaattagaaacatggtgatgtatttttataga
caaggcaataatactgaatcataatttgatatcaatagtttcatcccgtc
tgttaatttgtcctgctaaagccactcagtacctgaacatggaaagaaaa
ctcttggattttgtcaagaatgtaatatgctttgttttgagtacataaaa
tgacaaagaagacacaatctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-020G02.b_359_423 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      ||||||||| |||||
seq2  CTTCTTACCGGTTGG  65

seq1: chr16_79348544_79349531
seq2: B6Ng01-020G02.g_67_1040

seq1  GAATTCTGCTGAGATGGTAAAAGTGTAATGGGTTGTTAGGAACATATGGT  50
      ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
seq2  GAATTCTGCTGAGATGGTAAAAGAGTAATGGGTTGGTAGGAACATCTGGT  50

seq1  TCAAAGTCTCTTGCTCTCTCTTTTCATTTCTGTTAGTTTTACTTAAGAGA  100
       ||||| | ||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAAGGCACTTGCTCTCTCTTTTCATTTCTGTTAGTTTTACTTAAAAGA  100

seq1  TAGGTCCAACAAAATCAAGTTATAAGTATAATTGTCTCAGTAAGAAGATG  150
      ||||||||||||||||| ||||||| ||||| |||||||  || ||||||
seq2  TAGGTCCAACAAAATCAGGTTATAAATATAACTGTCTCATCAACAAGATG  150

seq1  ACTAAATTGATAAGGATCCGAAGAGTGAATAAAGATGCTGACGACATGGC  200
      || || ||||||||||||| |||||||||||||||||||||| || ||| 
seq2  ACGAAGTTGATAAGGATCCCAAGAGTGAATAAAGATGCTGACTACTTGGG  200

seq1  CAAAGTAAAATGGATTAGGCTGTCTTCATGCTAGGACTTTAAATTGATGT  250
      |||||| |||||||||| ||||||||||||||| ||||||||||||||||
seq2  CAAAGTCAAATGGATTAAGCTGTCTTCATGCTACGACTTTAAATTGATGT  250

seq1  GTACAAAATTAAGAAGTGCTGTTGCAACAGTGTTTCAAACATCCTAGCCA  300
      |||| ||||||  |||||||||||||||||||||||||||||||||||| 
seq2  GTACGAAATTACCAAGTGCTGTTGCAACAGTGTTTCAAACATCCTAGCCG  300

seq1  GGTGATGTTTATTCTGGGGTTAAACACAAGAAGGGTAAATGTAGGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTTTATTCTGGGGTTAAACACAAGAAGGGTAAATGTAGGCAGAT  350

seq1  GGATTCTGAAGAAATCAAAAGCTTGTTTAAATGCAAATTTTTCTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GGATTCTGAAGAAATCAAAAGCTTGTTTAAATGCAAATTTTTCTACCTAG  400

seq1  AAGAAGCATTCAGAGAAGAAATGATATCTAAATAAATTTTCTTTCAGCAG  450
      || || ||||| |||||||||||||||||||||||||||||||||| |||
seq2  AAAAACCATTCTGAGAAGAAATGATATCTAAATAAATTTTCTTTCAACAG  450

seq1  AATGCTTTCTTTTTCAGGTTTGAAAGAGGCAAACTCAGGTGTCTAATGGA  500
      |||||||||||||||  ||||||||||||| ||||||||||||| |||||
seq2  AATGCTTTCTTTTTCCAGTTTGAAAGAGGCGAACTCAGGTGTCTCATGGA  500

seq1  GATTTACTAAAGAACTAAAACTGGGTACCTTTGCAAACGGAATTTCAGTG  550
      ||||| |||||||||||||  |||||||||||||||||||||||||||||
seq2  GATTTGCTAAAGAACTAAAGGTGGGTACCTTTGCAAACGGAATTTCAGTG  550

seq1  CCTCTAAAAGCCTACTCTCTGAAGCACTTTACTTAGCTGTGGAGCTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAAGCCTACTCTCTGAAGCACTTTACTTAGCTGTGGAGCTGAAC  600

seq1  CTGCAATCAAATTACAATCTTCTTTGAATTTTGCATACCAATCTTGACTT  650
      ||||||||||||||||||| ||||||||||||||||||  ||||||||||
seq2  CTGCAATCAAATTACAATC-TCTTTGAATTTTGCATACTCATCTTGACTT  649

seq1  CAAGATGAGTTGATACTTCAAGACATAAATGTACAATTTGGTCTCTCTCT  700
      | |||||||||||| || | |||||| | ||| |||||||| ||| | ||
seq2  CTAGATGAGTTGATGCTACTAGACATCAGTGTCCAATTTGGGCTCGCGCT  699

seq1  TATGATCCACTTAACTTCTCGGATAACAAATAACTACTTAGGAGATGAAT  750
      ||||||||||| |||| ||| ||| ||||||||||||||| |||||||||
seq2  TATGATCCACTAAACTCCTCCGATCACAAATAACTACTTATGAGATGAAT  749

seq1  TAATGGAAAAATATATTTTTAATTAGAAACATGG-GATGTATTTTTATGG  799
      | ||||||||||   ||||||||||||||||||| ||||||||||||| |
seq2  TGATGGAAAAATGCTTTTTTAATTAGAAACATGGTGATGTATTTTTATAG  799

seq1  ACAAGGCAGTAGTTACTGAATCATAATTTGATATCAATTATTTTCCATCT  849
      |||||||| ||  |||||||||||||||||||||||||  |||  |||| 
seq2  ACAAGGCAATA-ATACTGAATCATAATTTGATATCAATAGTTT--CATCC  846

seq1  CATCTGTTAATTTGTCATGCTAAAGCCACTCAGTTACCTGAAAGATGGGA  899
      | |||||||||||||| |||||||||||||||| |||||| || || |||
seq2  CGTCTGTTAATTTGTCCTGCTAAAGCCACTCAG-TACCTG-AACAT-GGA  893

seq1  AAGAAAAGGTCT-TTGGATTTTTGTAGAGTATCTTATTATTCTTTTGTTT  948
      |||||||   || ||||| ||||||  || ||  || ||| | |||||||
seq2  AAGAAAA---CTCTTGGA-TTTTGTCAAGAAT-GTAATATGC-TTTGTTT  937

seq1  TGTGTAGCATAGAAAGGAGAAAGAAGACACAATCCTTTGA  988
      || ||| |||| ||| || |||||||||||||| ||||||
seq2  TGAGTA-CATA-AAATGACAAAGAAGACACAAT-CTTTGA  974