BAC Information

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BAC

Clone NameB6Ng01-020J08
Chromosome5 (Build37)
Map Location 49,687,235 - 49,797,891
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020J08.bB6Ng01-020J08.g
ACCDH853343DH853344
length2741,038
definitionDH853343|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J08, 5' end.DH853344|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,797,618 - 49,797,891)(49,687,235 - 49,688,276)
sequence
aggacatggtattaaatgtcttccagaattattgcctgaatcaggccact
cccatcaccaattgtttttatatgctttggttgactcatcaggtgattaa
tattaaatcattacaaaattttttgataactagttatacaatagtactaa
ttctagagagagcaaagaaaccaacaccaaaacaaaaagcataaaactaa
tcaaaaagcattcaaaatttttttgttgttgttgtttgtttgtttgttcg
gagagaatagaaaggagagggagg
gaattcatattcaggtctatctgcagctgacctactcacaatgcatacct
ctcagccagtgtagggtggggtgagtactaggcacttgggattgccttct
tctcctggaggttggagctgagaaggtgcctcacatctcaactgatagat
ttctgcttttcaaatgtttgagatgaagtgtaacatcgagtcaaagagga
aaaataatggggttgtgacacaatagccaaagaagctccatgacaagaaa
atattaaaggctcctgctttatctctaaaggcaggacacaggatcaaaca
aatgtcctgaacttttttaaactgatcttcacattcacatagacacacag
acacacagacacacagacacacagactctctctctctctctctctctctc
tctctctaaaagtggatagttttattccacaaaaaaggataggatgaatg
caggtgaaaaagatcaaacaatttacccatattaaattcagaattaagta
tcacatattaaatgtgtttggcaggtttttttcctgatctttagagtcat
gctttgaagaactgttggatatcatagcctgcatctctgcctcctataca
agcagaccccacaaactcacattacatactgatttgggttacaccctata
attatccttttactgctgtggactccatcaaaaccacaatagataaatgt
ttttaatatattttgaacaaaaaatatgacttaagattgattataacatt
ttgatttataaaaattttcccattctaaaatatttttaaaagatggggat
ttaaaaaggtgtcctagaaactattcctaaggaacttagaaaggtacagt
tgagcaaattaagtgcgttttctatgaattgtgttgttatccaatatcta
ttggtattccatatagtatttttctatgcaaatgtaccaggctgtgactc
acattttcactctccttggtaaagagatgcttgttttctgggcatttgta
aactttaaagatttgcctaaaactgaggacgaaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49797618_49797891
seq2: B6Ng01-020J08.b_48_321 (reverse)

seq1  CCTCCCTCTCCTTTCTATTCTCTCCGAACAAACAAACAAACAACAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCCTTTCTATTCTCTCCGAACAAACAAACAAACAACAACAAC  50

seq1  AAAAAAATTTTGAATGCTTTTTGATTAGTTTTATGCTTTTTGTTTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTTGAATGCTTTTTGATTAGTTTTATGCTTTTTGTTTTGGTG  100

seq1  TTGGTTTCTTTGCTCTCTCTAGAATTAGTACTATTGTATAACTAGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTTTGCTCTCTCTAGAATTAGTACTATTGTATAACTAGTTATC  150

seq1  AAAAAATTTTGTAATGATTTAATATTAATCACCTGATGAGTCAACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTTGTAATGATTTAATATTAATCACCTGATGAGTCAACCAAAG  200

seq1  CATATAAAAACAATTGGTGATGGGAGTGGCCTGATTCAGGCAATAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAAACAATTGGTGATGGGAGTGGCCTGATTCAGGCAATAATTCT  250

seq1  GGAAGACATTTAATACCATGTCCT  274
      ||||||||||||||||||||||||
seq2  GGAAGACATTTAATACCATGTCCT  274

seq1: chr5_49687235_49688276
seq2: B6Ng01-020J08.g_66_1103

seq1  GAATTCATATTCAGGTCTATCTGCAGCTGACCTACTCACAATGCATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCAGGTCTATCTGCAGCTGACCTACTCACAATGCATACCT  50

seq1  CTCAGCCAGTGTAGGGTGGGGTGAGTACTAGGCACTTGGGATTGCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGTGTAGGGTGGGGTGAGTACTAGGCACTTGGGATTGCCTTCT  100

seq1  TCTCCTGGAGGTTGGAGCTGAGAAGGTGCCTCACATCTCAACTGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGAGGTTGGAGCTGAGAAGGTGCCTCACATCTCAACTGATAGAT  150

seq1  TTCTGCTTTTCAAATGTTTGAGATGAAGTGTAACATCGAGTCAAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTTCAAATGTTTGAGATGAAGTGTAACATCGAGTCAAAGAGGA  200

seq1  AAAATAATGGGGTTGTGACACAATAGCCAAAGAAGCTCCATGACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGGGGTTGTGACACAATAGCCAAAGAAGCTCCATGACAAGAAA  250

seq1  ATATTAAAGGCTCCTGCTTTATCTCTAAAGGCAGGACACAGGATCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGGCTCCTGCTTTATCTCTAAAGGCAGGACACAGGATCAAACA  300

seq1  AATGTCCTGAACTTTTTTAAACTGATCTTCACATTCACATAGACACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGAACTTTTTTAAACTGATCTTCACATTCACATAGACACACAG  350

seq1  ACACACAGACACACAGACACACAGACTCTCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACAGACACACAGACTCTCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTAAAAGTGGATAGTTTTATTCCACAAAAAAGGATAGGATGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAAAAGTGGATAGTTTTATTCCACAAAAAAGGATAGGATGAATG  450

seq1  CAGGTGAAAAAGATCAAACAATTTACCCATATTAAATTCAGAATTAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAAAAGATCAAACAATTTACCCATATTAAATTCAGAATTAAGTA  500

seq1  TCACATATTAAATGTGTTTGGCAGGTTTTTTTCCTGATCTTTAGAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTAAATGTGTTTGGCAGGTTTTTTTCCTGATCTTTAGAGTCAT  550

seq1  GCTTTGAAGAACTGTTGGATATCATAGCCTGCATCTCTGCCTCCTATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAGAACTGTTGGATATCATAGCCTGCATCTCTGCCTCCTATACA  600

seq1  AGCAGACCCCACAAACTCACATTACATACTGATTTGGGTTACACCCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCCCACAAACTCACATTACATACTGATTTGGGTTACACCCTATA  650

seq1  ATTATCCTTTTACTGCTGTGGACTCCATCAAAACCACAATAGATAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTTACTGCTGTGGACTCCATCAAAACCACAATAGATAAATGT  700

seq1  TTTTAATATATTTTGAACAAAAAATATGACTTAAGATTGATTATAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATATTTTGAACAAAAAATATGACTTAAGATTGATTATAACATT  750

seq1  TTGATTTATAAAAATTTTCCCATTCTAAAATATTTTTAAAAGATGGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATAAAAATTTTCCCATTCTAAAATATTTTTAAAAGATGGGGAT  800

seq1  TTAAAAAGGTGTCCTAGAAACTATTCCTAAGGAACTTAGAAAGGTACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGTGTCCTAGAAACTATTCCTAAGGAACTTAGAAAGGTACAGT  850

seq1  TGAGCAAATTAAGTGCGTTTTCTTATGAATTGTGTTGTTATCCAATATCT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAGCAAATTAAGTGCGTTTTC-TATGAATTGTGTTGTTATCCAATATCT  899

seq1  ATTGGTATTCCATATAGTATTTTTCTATGCAAATGTACCAGGCTGTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTCCATATAGTATTTTTCTATGCAAATGTACCAGGCTGTGACT  949

seq1  CACATTTTCAACTCTACCTTGGTAAAGAGATGCTTGTTTTCTGGGCATTT  1000
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CACATTTTC-ACTCT-CCTTGGTAAAGAGATGCTTGTTTTCTGGGCATTT  997

seq1  GTATACTTTAAAGATTTGCCTAAAACTGAGGACAGAAGGATT  1042
      ||| ||||||||||||||||||||||||||||| ||||||||
seq2  GTAAACTTTAAAGATTTGCCTAAAACTGAGGAC-GAAGGATT  1038