BAC Information

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BAC

Clone NameB6Ng01-020K04
Chromosome5 (Build37)
Map Location 97,088,819 - 97,198,641
singlet/doubletdoublet
Overlap geneFras1
Upstream geneLOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020K04.bB6Ng01-020K04.g
ACCDH853383DH853384
length1,1681,048
definitionDH853383|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K04, 5' end.DH853384|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,197,467 - 97,198,641)(97,088,819 - 97,089,889)
sequence
gaattccatctcagtgtggtgctctaaggaggcccagcccctgggtgctg
tcacatagatgtaggacacgtagagtggcacatgaaccgtcaggaacgac
tgggcagaatctctcacctgtcaacaaaagtgtgcaagaaacaggcttac
ttctttcctgggaggataggagagaaaataatgaagtaatatccagatct
gtaatggaagaaaactcatggagaagagagaacattcatgttctagggga
ggaaccatcaggtttgtgccatccatccacagaaacagaaatgtcggctg
ccttgaagctttctccagtagggggcagtgctgcacacaaaaccagagga
actagggcacacatttgaattaaagagactacgcaatggatgaaaatcct
tctacagattctctcatttagtaaggctaaacatgttttgaagtgaaaac
caaacagctaacacgttttggctctcactgagacacaggcccaaacactg
gagtggagctcgagaatgaatgtccccgagagaccgcctagtctctctgg
tgctcttataaaactgctctcgtgagcctttggagtcttcttagcaacac
ttatgtcatcaggaatgtttaatgtgtaaacatgcgcacacacatgcatg
cctacccacatatctgttttcgcaggggttgtgagtttggaataagcaca
cagtcagaaggtttgaaacaacagactcttcccagtggtgtttcggaatc
caaagttgtattttgaggggtgtaccacctgcgattctgattcattccaa
gtgggggaagagaatatattcatgtaaagaaccccattagcaaatgtgaa
cctccattttccaaagcatacacagtgaaaagaatcccacacccatctaa
agaagcagatactagagttttggacttgctacaataattgttttatacat
caccttgatttagaaagacctcagcgctttttcactacagtacagccaga
cccttggtaaggatcttaaaggatattcccttacctggctgaattcagct
atcgggtatctagctgaccaaggcacttcttagaacaagttggcatggca
ctcagccaaatttctcaggaccactctggaattacgcaattacggactcc
ccacacacatcgtaagct
gaattctttccctgaggccacccatgtgttaaatctggagacttgctgat
atctagtcagtgactttaatagaacggacaacgatgttgtaatctcttat
gaataggtacacaagggattccctatctcgttcagtagagacattagcct
gttcttctgtcctttttctgtgaaggaacagagaggagctttgtaagagg
aagcattaatttagttttactctctgagcagggcacattcatgtttttgt
tggacgggtgtaatggcttgaacaagatgggtggctgtgtctctgtctcc
caggtggttcctgccaaataccaaatgctcagggcatcgctgctgatgct
ggtgtggttctttggggctaagggaaggaattatgagttcagtcctgttt
ttcaagttctatactacttcacccagacttagcctggcagagaataaact
caattgccacttccgggaggatgctgagctactgtggggaaaacagagtc
aggaatgatgtcaaaacatgttttactggggcaggagacaaagggggaaa
atagattaaaaagtaataacgaatgctctgccgaacaggttttcattaat
tgggttaattaagaagctcgacaaacccaaacctgctatagtatatgctg
ctaacaaagttctacatcctgcaagggctacagtgtgggcggtcagagtc
agctctggtagatggctcttttgttggatttccaaggaattgcccccctc
ttccattaactatgatgctcctggaaaccatgccttctttccacattgcc
aaccagtctgacaatcttcctgatctcctttgttgtttaacagttttttt
ctgccactagttaatgcattaatgttaagattccccagccccgcccaccc
cgcccaatgcatagtagaccagctgaacaaaataaatctgtctctgagag
cctttgtactgtgggattgcttgttgtagcttaaatacctattgatgcat
cccattcctcatgctctacggggctttatggggaacagtagatacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97197467_97198641
seq2: B6Ng01-020K04.b_46_1213 (reverse)

seq1  AGCTTATCGATGTGTGTGGGGGCTCCGTGACTGCTGACTTCCAGGTGGGT  50
      |||||| ||||||||||||||  ||||| | |||  | ||||||   |||
seq2  AGCTTA-CGATGTGTGTGGGGAGTCCGTAATTGCGTAATTCCAGAGTGGT  49

seq1  CCTCTGAGATATTGTGCTTGGGTGCCATGCCAACTCTGTTCT-AGAAGTG  99
      |  |||||| ||| ||  || |||||||||||||| |||||| |||||||
seq2  C--CTGAGAAATT-TGGCTGAGTGCCATGCCAACT-TGTTCTAAGAAGTG  95

seq1  CCTTGGTCAGCTAGATACCCGGTAGCTGTATTCAGCCAGGTAAGGGAATA  149
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  CCTTGGTCAGCTAGATACCCGATAGCTGAATTCAGCCAGGTAAGGGAATA  145

seq1  TTCTTTTTAAGATCCTTACCAAGGGTCTTGGCTGTACTGTAGTTGAAAGA  199
      | |  |||||||||||||||||||||| |||||||||||||| ||||| |
seq2  TCC--TTTAAGATCCTTACCAAGGGTC-TGGCTGTACTGTAG-TGAAAAA  191

seq1  GCGCTGAGGTC-TTCTAAATCAAGGTGATGTATAAAACAATTATTGTAGC  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGAGGTCTTTCTAAATCAAGGTGATGTATAAAACAATTATTGTAGC  241

seq1  AAGTCCAAAACTCTAGTATCTGCTTCTTTAGATGGGTGTGGGATTCTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAAACTCTAGTATCTGCTTCTTTAGATGGGTGTGGGATTCTTTT  291

seq1  CACTGTGTATGCTTTGGAAAATGGAGGTTCACATTTGCTAATGGGGTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTATGCTTTGGAAAATGGAGGTTCACATTTGCTAATGGGGTTCT  341

seq1  TTACATGAATATATTCTCTTCCCCCACTTGGAATGAATCAGAATCGCAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAATATATTCTCTTCCCCCACTTGGAATGAATCAGAATCGCAGG  391

seq1  TGGTACACCCCTCAAAATACAACTTTGGATTCCGAAACACCACTGGGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACCCCTCAAAATACAACTTTGGATTCCGAAACACCACTGGGAAG  441

seq1  AGTCTGTTGTTTCAAACCTTCTGACTGTGTGCTTATTCCAAACTCACAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTGTTTCAAACCTTCTGACTGTGTGCTTATTCCAAACTCACAAC  491

seq1  CCCTGCGAAAACAGATATGTGGGTAGGCATGCATGTGTGTGCGCATGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGAAAACAGATATGTGGGTAGGCATGCATGTGTGTGCGCATGTTT  541

seq1  ACACATTAAACATTCCTGATGACATAAGTGTTGCTAAGAAGACTCCAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAAACATTCCTGATGACATAAGTGTTGCTAAGAAGACTCCAAAG  591

seq1  GCTCACGAGAGCAGTTTTATAAGAGCACCAGAGAGACTAGGCGGTCTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGAGAGCAGTTTTATAAGAGCACCAGAGAGACTAGGCGGTCTCTC  641

seq1  GGGGACATTCATTCTCGAGCTCCACTCCAGTGTTTGGGCCTGTGTCTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATTCATTCTCGAGCTCCACTCCAGTGTTTGGGCCTGTGTCTCAG  691

seq1  TGAGAGCCAAAACGTGTTAGCTGTTTGGTTTTCACTTCAAAACATGTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCAAAACGTGTTAGCTGTTTGGTTTTCACTTCAAAACATGTTTA  741

seq1  GCCTTACTAAATGAGAGAATCTGTAGAAGGATTTTCATCCATTGCGTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTAAATGAGAGAATCTGTAGAAGGATTTTCATCCATTGCGTAGT  791

seq1  CTCTTTAATTCAAATGTGTGCCCTAGTTCCTCTGGTTTTGTGTGCAGCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATTCAAATGTGTGCCCTAGTTCCTCTGGTTTTGTGTGCAGCAC  841

seq1  TGCCCCCTACTGGAGAAAGCTTCAAGGCAGCCGACATTTCTGTTTCTGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTACTGGAGAAAGCTTCAAGGCAGCCGACATTTCTGTTTCTGTG  891

seq1  GATGGATGGCACAAACCTGATGGTTCCTCCCCTAGAACATGAATGTTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGCACAAACCTGATGGTTCCTCCCCTAGAACATGAATGTTCTC  941

seq1  TCTTCTCCATGAGTTTTCTTCCATTACAGATCTGGATATTACTTCATTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCATGAGTTTTCTTCCATTACAGATCTGGATATTACTTCATTAT  991

seq1  TTTCTCTCCTATCCTCCCAGGAAAGAAGTAAGCCTGTTTCTTGCACACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTATCCTCCCAGGAAAGAAGTAAGCCTGTTTCTTGCACACTT  1041

seq1  TTGTTGACAGGTGAGAGATTCTGCCCAGTCGTTCCTGACGGTTCATGTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACAGGTGAGAGATTCTGCCCAGTCGTTCCTGACGGTTCATGTGC  1091

seq1  CACTCTACGTGTCCTACATCTATGTGACAGCACCCAGGGGCTGGGCCTCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACGTGTCCTACATCTATGTGACAGCACCCAGGGGCTGGGCCTCC  1141

seq1  TTAGAGCACCACACTGAGATGGAATTC  1175
      |||||||||||||||||||||||||||
seq2  TTAGAGCACCACACTGAGATGGAATTC  1168

seq1: chr5_97088819_97089889
seq2: B6Ng01-020K04.g_64_1111

seq1  GAATTCTTTCCCTGAGGCCACCCATGTGTTAAATCTGGAGACTTGCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTGAGGCCACCCATGTGTTAAATCTGGAGACTTGCTGAT  50

seq1  ATCTAGTCAGTGACTTTAATAGAACGGACAACGATGTTGTAATCTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCAGTGACTTTAATAGAACGGACAACGATGTTGTAATCTCTTAT  100

seq1  GAATAGGTACACAAGGGATTCCCTATCTCGTTCAGTAGAGACATTAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGTACACAAGGGATTCCCTATCTCGTTCAGTAGAGACATTAGCCT  150

seq1  GTTCTTCTGTCCTTTTTCTGTGAAGGAACAGAGAGGAGCTTTGTAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTGTCCTTTTTCTGTGAAGGAACAGAGAGGAGCTTTGTAAGAGG  200

seq1  AAGCATTAATTTAGTTTTACTCTCTGAGCAGGGCACATTCATGTTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAATTTAGTTTTACTCTCTGAGCAGGGCACATTCATGTTTTTGT  250

seq1  TGGACGGGTGTAATGGCTTGAACAAGATGGGTGGCTGTGTCTCTGTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGGTGTAATGGCTTGAACAAGATGGGTGGCTGTGTCTCTGTCTCC  300

seq1  CAGGTGGTTCCTGCCAAATACCAAATGCTCAGGGCATCGCTGCTGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTCCTGCCAAATACCAAATGCTCAGGGCATCGCTGCTGATGCT  350

seq1  GGTGTGGTTCTTTGGGGCTAAGGGAAGGAATTATGAGTTCAGTCCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTTCTTTGGGGCTAAGGGAAGGAATTATGAGTTCAGTCCTGTTT  400

seq1  TTCAAGTTCTATACTACTTCACCCAGACTTAGCCTGGCAGAGAATAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCTATACTACTTCACCCAGACTTAGCCTGGCAGAGAATAAACT  450

seq1  CAATTGCCACTTCCGGGAGGATGCTGAGCTACTGTGGGGAAAACAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCACTTCCGGGAGGATGCTGAGCTACTGTGGGGAAAACAGAGTC  500

seq1  AGGAATGATGTCAAAACATGTTTTACTGGGGCAGGAGACAAAGGGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGATGTCAAAACATGTTTTACTGGGGCAGGAGACAAAGGGGGAAA  550

seq1  ATAGATTAAAAAGTAATAACGAATGCTCTGCCGAACAGGTTTTCATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAAAAAGTAATAACGAATGCTCTGCCGAACAGGTTTTCATTAAT  600

seq1  TGGGTTAATTAAGAAGCTCGACAAACCCAAACCTGCTATAGTATATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAATTAAGAAGCTCGACAAACCCAAACCTGCTATAGTATATGCTG  650

seq1  CTAACAAAGTTCTACATCCTGCAAGGGCTACAGTGTGGGCGGTCAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAGTTCTACATCCTGCAAGGGCTACAGTGTGGGCGGTCAGAGTC  700

seq1  AGCTCTGGTAGATGGCTCTTTTGTTGGATTTCCAAGGAATTGCCCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTAGATGGCTCTTTTGTTGGATTTCCAAGGAATTGCCCCCCTC  750

seq1  TTCCATTAACTATGATGCTCCTGGAAACCATGCCTTCTTTCCACATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAACTATGATGCTCCTGGAAACCATGCCTTCTTTCCACATTGCC  800

seq1  AACCAGTCTGACAATCTTCCTGATCTCCTTTGTTGTTTAAACAGTTTTTT  850
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  AACCAGTCTGACAATCTTCCTGATCTCCTTTGTTGTTT-AACAG-TTTTT  848

seq1  TTCTGCCACTAGTTAATGCATTAATGTTTAAGATTCCCCAGCCCCGCCCC  900
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TTCTGCCACTAGTTAATGCATTAATG-TTAAGATTCCCCAGCCCCG-CCC  896

seq1  ACCCCGCCCCAATGCCATAGTAAGAACCAGCTGAACAAAATAAATTCTGT  950
      |||||| ||||||| |||||||   ||||||||||||||||||| |||||
seq2  ACCCCG-CCCAATG-CATAGTA--GACCAGCTGAACAAAATAAA-TCTGT  941

seq1  CTCTGAGAGCCCTTTGTACTGTGGGATTGCCTGTGTGTAGCTTAAAATAC  1000
      ||||||||| |||||||||||||||||||| ||| |||||||| ||||| 
seq2  CTCTGAGAG-CCTTTGTACTGTGGGATTGCTTGT-TGTAGCTT-AAATA-  987

seq1  CCTATTGTATTGCATCCCATTTCACTCATGCCTCTTACGGGGGCTTTTAT  1050
      |||||||   |||||||||||   |||||| ||| |||||||   |||||
seq2  CCTATTG--ATGCATCCCATT--CCTCATG-CTC-TACGGGG--CTTTAT  1029

seq1  GGGGACACAGTTAGATACAAT  1071
      ||||| |||| ||||||||||
seq2  GGGGA-ACAG-TAGATACAAT  1048