BAC Information

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BAC

Clone NameB6Ng01-020N07
Chromosome5 (Build37)
Map Location 85,284,493 - 85,435,705
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N07.bB6Ng01-020N07.g
ACCDH853516DH853517
length1,1201,046
definitionDH853516|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N07, 5' end.DH853517|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,434,579 - 85,435,705)(85,284,493 - 85,285,550)
sequence
gaattctctgagatgattattttcctctgaagaaggcttacgtctttctc
tacatatgcacataattatatttggccccaagacaaaaatcatttagcat
tatatgtgtcatctgtctgggtcttctaacaggatagcaaccaattgtat
ccataataaaccgattttacaattgaatcacagatgctaagtcaaggatt
ggaattagcaggcttatttaataatgtagctcaaagatactattaaagaa
aacatccttcacttctgcaaaaaaaagtgtcttattttgtataaatatct
tgtgttccaatgataaatttcatatgttcataatacaagagttggaagta
tagacagtgttgctattgaatacaggctcctggccaaaaatccagtactt
tcacattgtaagaccttgagaaagttactgacatctatagttcttaattc
tcttcctttttttgtggtattacctatattacaatggtctatagggctga
gggatagttctgtcagtaaagttattgatgtgcaaacgtgagaaccattg
cttgatccccagaatccatgtatcaagacaaagaagggtgatccacactg
gtatcactcaaattagggtcattatgatagtgggatccttgggcttgcta
aacagcaatgtttatttaatgtgcttgatggcacctgaggaatgatgatt
ctatttccttcataaattgtactttcatgtcttgaattatttttagtttt
ttagtcaaacacttgcctttttactaagtcaggtatttgtatctttcctt
gaacatactcattattgttattttagaacttcatatagtgcttcatacaa
attgcattctcagtgtctactacaatagggatactggtttttggaagtga
catattttttaaatatttgtttgtggtttattttttatttatttttttat
agtctagtcatttttttatagtctagtcattacctcccttccactctacc
ctcccccagtcttcatctattcctcattcccttgtctcaagaaggatgtt
cttccccctacccttcccaccagtcctccacctcatggggccttgaattc
cctgaggggtagacccatct
gaattcatatgtatgtgtatctatgtatactgtgtgtatgtatgtgtttt
attgcttgtatatgtacttttatgtattatcatttatgtatgcattacta
atttaatattattagttgtcagcaggacacacttggaagaatgtcaattt
aagaattcatcaagaaatggccaactcaatatgggtaattccacaacaca
atgatggctgtattagcaaagtagcccatgaaaagcaggaaggaatccaa
accagttaaaacactactttttccttattccttctttaatttctgcccca
atatctttttatgttttctttgtttcaaggttatccattaaatgcagtaa
ttactgagcttcgtagggtaagatattcttctttggagaacaatgttttc
tcacaccatttctagagagaaatttggtgcaagactatttcttctcttaa
agtcaaaattattctctaatttgttttttaaatgtctttattcctgagaa
gtgatctgcttaaaaatgaagatattcattgtgtattagcaataagtttt
attataattaattattgctcatgatcagtagcttgagattttaattaatt
ttaaagtgactatttgtttccgaattttcatatataaaatcgtttactat
cattatatttgaaacattccctatggagaagctcttctccaatgaattta
atacttttagcttttcttctttgtattttgttgtgatttctctaagacat
tatcatatatcagattcttttcaatctgatatatcaatggttatagcaca
tcaaaatctattaataattatctcatgatacttttatttcatatttttta
tttttgctcatttagatattgtgtatatcaattttcttgatatatatatg
tatatacatatatagtcatattcacaacttagtattttctttcaagttaa
aaatacttgagatatctttaagccatttttccttatttcaacttaattct
gctcttggtcatttaatttgttacaatttccagtggtgtgctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85434579_85435705
seq2: B6Ng01-020N07.b_42_1161 (reverse)

seq1  AGATGAGTCTAACCCTCAGGAGACTCAAGGCCCCATGGAGTTGGAGGACT  50
      ||||| ||||| ||||||||  | |||||||||||| ||| |||||||||
seq2  AGATGGGTCTACCCCTCAGGGAATTCAAGGCCCCAT-GAGGTGGAGGACT  49

seq1  GGTGGGGAGGGTGTGGGGGAGGAACATCCTCTTAGAGACAAGGGAATGAG  100
      |||||| |||||  |||||| |||||||||  | ||||||||||||||||
seq2  GGTGGGAAGGGT-AGGGGGAAGAACATCCTTCTTGAGACAAGGGAATGAG  98

seq1  GAATAGGATGAGGAACTGTGGGAGGGTAGAGTGGAAGGGA-GTAATGACT  149
      ||||| ||||| | |||| ||||||||||||||||||||| |||||||||
seq2  GAATA-GATGAAG-ACTGGGGGAGGGTAGAGTGGAAGGGAGGTAATGACT  146

seq1  AGACTATAAAAAAAAATGACTAGACTATAAAAAAAATAAAATAAAAAATA  199
      |||||||  ||||||||||||||||||||||||||   ||||||||||||
seq2  AGACTAT--AAAAAAATGACTAGACTATAAAAAAA--TAAATAAAAAATA  192

seq1  AACCACAAACAAATATTTAAAAAATATGTCACTTCCAAAAACCAGTATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAACAAATATTTAAAAAATATGTCACTTCCAAAAACCAGTATCC  242

seq1  CTATTGTAGTAGACACTGAGAATGCAATTTGTATGAAGCACTATATGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAGTAGACACTGAGAATGCAATTTGTATGAAGCACTATATGAAG  292

seq1  TTCTAAAATAACAATAATGAGTATGTTCAAGGAAAGATACAAATACCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATAACAATAATGAGTATGTTCAAGGAAAGATACAAATACCTGA  342

seq1  CTTAGTAAAAAGGCAAGTGTTTGACTAAAAAACTAAAAATAATTCAAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAAAAAGGCAAGTGTTTGACTAAAAAACTAAAAATAATTCAAGAC  392

seq1  ATGAAAGTACAATTTATGAAGGAAATAGAATCATCATTCCTCAGGTGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTACAATTTATGAAGGAAATAGAATCATCATTCCTCAGGTGCCA  442

seq1  TCAAGCACATTAAATAAACATTGCTGTTTAGCAAGCCCAAGGATCCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACATTAAATAAACATTGCTGTTTAGCAAGCCCAAGGATCCCACT  492

seq1  ATCATAATGACCCTAATTTGAGTGATACCAGTGTGGATCACCCTTCTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATGACCCTAATTTGAGTGATACCAGTGTGGATCACCCTTCTTTG  542

seq1  TCTTGATACATGGATTCTGGGGATCAAGCAATGGTTCTCACGTTTGCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATACATGGATTCTGGGGATCAAGCAATGGTTCTCACGTTTGCACA  592

seq1  TCAATAACTTTACTGACAGAACTATCCCTCAGCCCTATAGACCATTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACTTTACTGACAGAACTATCCCTCAGCCCTATAGACCATTGTAA  642

seq1  TATAGGTAATACCACAAAAAAAGGAAGAGAATTAAGAACTATAGATGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTAATACCACAAAAAAAGGAAGAGAATTAAGAACTATAGATGTCA  692

seq1  GTAACTTTCTCAAGGTCTTACAATGTGAAAGTACTGGATTTTTGGCCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTTCTCAAGGTCTTACAATGTGAAAGTACTGGATTTTTGGCCAGG  742

seq1  AGCCTGTATTCAATAGCAACACTGTCTATACTTCCAACTCTTGTATTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATTCAATAGCAACACTGTCTATACTTCCAACTCTTGTATTATG  792

seq1  AACATATGAAATTTATCATTGGAACACAAGATATTTATACAAAATAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGAAATTTATCATTGGAACACAAGATATTTATACAAAATAAGAC  842

seq1  ACTTTTTTTTGCAGAAGTGAAGGATGTTTTCTTTAATAGTATCTTTGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTGCAGAAGTGAAGGATGTTTTCTTTAATAGTATCTTTGAGC  892

seq1  TACATTATTAAATAAGCCTGCTAATTCCAATCCTTGACTTAGCATCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATTAAATAAGCCTGCTAATTCCAATCCTTGACTTAGCATCTGTG  942

seq1  ATTCAATTGTAAAATCGGTTTATTATGGATACAATTGGTTGCTATCCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGTAAAATCGGTTTATTATGGATACAATTGGTTGCTATCCTGT  992

seq1  TAGAAGACCCAGACAGATGACACATATAATGCTAAATGATTTTTGTCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACCCAGACAGATGACACATATAATGCTAAATGATTTTTGTCTTG  1042

seq1  GGGCCAAATATAATTATGTGCATATGTAGAGAAAGACGTAAGCCTTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAATATAATTATGTGCATATGTAGAGAAAGACGTAAGCCTTCTTC  1092

seq1  AGAGGAAAATAATCATCTCAGAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  AGAGGAAAATAATCATCTCAGAGAATTC  1120

seq1: chr5_85284493_85285550
seq2: B6Ng01-020N07.g_67_1112

seq1  GAATTCATATGTATGTGTATCTATGTATACTGTGTGTATGTATGTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTATGTGTATCTATGTATACTGTGTGTATGTATGTGTTTT  50

seq1  ATTGCTTGTATATGTACTTTTATGTATTATCATTTATGTATGCATTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGTATATGTACTTTTATGTATTATCATTTATGTATGCATTACTA  100

seq1  ATTTAATATTATTAGTTGTCAGCAGGACACACTTGGAAGAATGTCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTATTAGTTGTCAGCAGGACACACTTGGAAGAATGTCAATTT  150

seq1  AAGAATTCATCAAGAAATGGCCAACTCAATATGGGTAATTCCACAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCATCAAGAAATGGCCAACTCAATATGGGTAATTCCACAACACA  200

seq1  ATGATGGCTGTATTAGCAAAGTAGCCCATGAAAAGCAGGAAGGAATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTGTATTAGCAAAGTAGCCCATGAAAAGCAGGAAGGAATCCAA  250

seq1  ACCAGTTAAAACACTACTTTTTCCTTATTCCTTCTTTAATTTCTGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTAAAACACTACTTTTTCCTTATTCCTTCTTTAATTTCTGCCCCA  300

seq1  ATATCTTTTTATGTTTTCTTTGTTTCAAGGTTATCCATTAAATGCAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTTATGTTTTCTTTGTTTCAAGGTTATCCATTAAATGCAGTAA  350

seq1  TTACTGAGCTTCGTAGGGTAAGATATTCTTCTTTGGAGAACAATGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGCTTCGTAGGGTAAGATATTCTTCTTTGGAGAACAATGTTTTC  400

seq1  TCACACCATTTCTAGAGAGAAATTTGGTGCAAGACTATTTCTTCTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCATTTCTAGAGAGAAATTTGGTGCAAGACTATTTCTTCTCTTAA  450

seq1  AGTCAAAATTATTCTCTAATTTGTTTTTTAAATGTCTTTATTCCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATTATTCTCTAATTTGTTTTTTAAATGTCTTTATTCCTGAGAA  500

seq1  GTGATCTGCTTAAAAATGAAGATATTCATTGTGTATTAGCAATAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCTTAAAAATGAAGATATTCATTGTGTATTAGCAATAAGTTTT  550

seq1  ATTATAATTAATTATTGCTCATGATCAGTAGCTTGAGATTTTAATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTAATTATTGCTCATGATCAGTAGCTTGAGATTTTAATTAATT  600

seq1  TTAAAGTGACTATTTGTTTCCGAATTTTCATATATAAAATCGTTTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGACTATTTGTTTCCGAATTTTCATATATAAAATCGTTTACTAT  650

seq1  CATTATATTTGAAACATTCCCTATGGAGAAGCTCTTCTCCAATGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTTGAAACATTCCCTATGGAGAAGCTCTTCTCCAATGAATTTA  700

seq1  ATACTTTTAGCTTTTCTTCTTTGTATTTTGTTGTGATTTCTCTAAGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTAGCTTTTCTTCTTTGTATTTTGTTGTGATTTCTCTAAGACAT  750

seq1  TATCATATATCAGATTCTTTTCAATCTGATATATCAATGGTTATAGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATATCAGATTCTTTTCAATCTGATATATCAATGGTTATAGCACA  800

seq1  TCAAAATCTATTAATAATTATCTCATGATACTTTTTATTTCATATTTTTT  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAAAATCTATTAATAATTATCTCATGATAC-TTTTATTTCATATTTTTT  849

seq1  ATTTTTGCTCATTTAGATATTGTGTTATATCAATTTTCTTGATTATATAT  900
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATTTTTGCTCATTTAGATATTGTG-TATATCAATTTTCTTGA-TATATAT  897

seq1  ATGTATATACATATATAGTCATATTCACCAACTTAGTATTTTCTTTCAAG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTATATACATATATAGTCATATTCA-CAACTTAGTATTTTCTTTCAAG  946

seq1  TTAAAAATACTTGGAGATATCTTTTAAGCCATTTTTCCTTATTTCAACTT  1000
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TTAAAAATACTT-GAGATATC-TTTAAGCCATTTTTCCTTATTTCAACTT  994

seq1  ATTTCTGCCTCTTGTTCATTTTATTTTGTTTACAATTTTTCCAGTGTGTG  1050
      | ||||| |||||| |||||| ||||   ||||||  ||||||||| |||
seq2  AATTCTG-CTCTTGGTCATTTAATTT--GTTACAA--TTTCCAGTG-GTG  1038

seq1  TGCTTTGC  1058
      ||||||||
seq2  TGCTTTGC  1046