BAC Information

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BAC

Clone NameB6Ng01-021E15
Chromosome17 (Build37)5 (Build37)
Map Location 36,735,926 - 36,737,01418,084,511 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896
Downstream geneH2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E15.bB6Ng01-021E15.g
ACCDH853837DH853838
length1,074951
definitionDH853837|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E15, 5' end.DH853838|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,735,926 - 36,737,014)(18,084,511 - 18,084,577)
sequence
gaattcctcacccagtggttaatctttccatgaccaattatgccagtctc
tatcactcccactgggaattcttagagaaggctgaagatcagaggtgtaa
aataaataaggacatgtgtggaccctgtccaggtctgctgattctaagtg
atttcctgtgagtctggcctcctgcagccctagttctcattgatagagaa
atatagaatgatatgttgataggtagacatacatacatacatacatacat
acatacatacagatagagacacacacacacaaagacagagggacagacaa
caacagaaagagacagagatagagagagtgagacacagagagaaagatag
gagacaaaatactgagagacagacagaaagtaagaaggagaaaaagaaaa
cacagagagaagaaatcagagagagagagagagagatttagtgtttggat
agctcagtgttgaggaactgtgggtatgcttgcataagtcttaggagtgt
tcttgcttctctggattttcagggaaatgtggtagtcatagtgttccatg
gaaatacatgcatgtaaaacatacacatacatataaacaaatgcatttct
caaaagtgaaattgtaaactacaaagaaaagcctaaccctacagggacac
acttcctccaacaaggtcatacctactccaaaaagggcacatctccgaat
tatatcacttagtgggccaaacattcaaacacttgagtctatttgtccaa
atctattcaaataactacacccactgccttagtcagggtctctatttttg
tacaaaccatcatgacaggaagcaagttagggagtaaagggttaatttag
attatacttctacaaagttgttcatcaccaaaggaagtcaggattggact
caagcaggtaaaaagcaggagctgatgtagaggccatggatggatgttac
ttattggcttgctcccatgccttgtcatctaattggcttctttcgatcta
ccatctttccatcttccagtattttttttataggacatttatttcagttg
aaattttatccccttccacttccc
gaattcaagaaggtggactccagaaaatcaaatatcagtattaaaaaatg
gggtaccgagttaaataaagaattttcaactgaggaatactgaagggctg
agaagcacctgaaaaacatgttcaacatccttaatcatcagggaaatgca
aatcaaacaaccctgagattccatctcacaccagtcagaatggctaagat
caaaaattcatgtgacagcagatgacagagtgaggatgtggagaaagagg
aactcccctctattgttggtgggactgcaagctggtacaaccactctgga
aatcagtctggcggttcctcagaaaactggacatagtactaccggaagat
acagcaatacctctcctgggcatatacccagaagatgttccaacttgaaa
tatggacacatgctccactatgttcatagcagccttatttataataacca
gaagctggaatgaacctagaagtccctcaacagaggaatggatacagaaa
acgtggtgcattcacacaatgaagtactactcagctattaaaaacaacga
atttatgaaatttctagggaaatggatggatatggaggatatcatcctga
gtgaggtaacccaatcacaaaagaacacacatgatatgcactcactgata
aatggacattaacccagaaacttaaactactcaagatacaattttcaaaa
cacatgaaactcaagaagaaggaagagcaaaatgtggttacttcattcct
tcttagaatgggaaacaaaatactcatggaaaggagttacagagacaaag
ttcagagctgagatggaagaaaggatcatccagagactgccccatccaga
gatccatcctttataccaccaccaaacccagacactattgtatatgccag
aaaattgtcctgacagaccttgatatagctatctctgtgagctatgcagt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36735926_36737014
seq2: B6Ng01-021E15.b_43_1116 (reverse)

seq1  GGGAAGTGGGGAAAGGGGATAAAATTTTAAATGTAAATAAATTGTCTAAT  50
      |||||||||   ||||||||||||||| || || ||||||| ||||  ||
seq2  GGGAAGTGG---AAGGGGATAAAATTTCAACTG-AAATAAA-TGTCCTAT  45

seq1  AAAAATAAAATAACTGGATAGATAGATAGATAGATAGATAGATAAGAAAG  100
      ||||  ||||| |||||| |||| || |||| | ||||| || ||| |||
seq2  AAAA--AAAAT-ACTGGA-AGATGGAAAGAT-GGTAGATCGA-AAG-AAG  88

seq1  CAAATAAGATGAACAAGGCAATGGAAGCAAGCCAATAAGTAACATCCATC  150
      | ||| ||||| ||||||| |||| |||||||||||||||||||||||||
seq2  CCAATTAGATG-ACAAGGC-ATGGGAGCAAGCCAATAAGTAACATCCATC  136

seq1  CATGGCCTCTACATCAGCTCCTGCTTTTTTACCTGCTTGAGTCCAATCCT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGGCCTCTACATCAGCTCCTGC-TTTTTACCTGCTTGAGTCCAATCCT  185

seq1  GACTTCCTTTGGTGATGAACAACTTTGTAGAAGTATAATCTAAATAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTTCCTTTGGTGATGAACAACTTTGTAGAAGTATAATCTAAATTAACC  235

seq1  CTTTACTCCCTAACTTGCTTCCTGTCATGATGGTTTGTACAAAAATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCCCTAACTTGCTTCCTGTCATGATGGTTTGTACAAAAATAGAG  285

seq1  ACCCTGACTAAGGCAGTGGGTGTAGTTATTTGAATAGATTTGGACAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTAAGGCAGTGGGTGTAGTTATTTGAATAGATTTGGACAAATA  335

seq1  GACTCAAGTGTTTGAATGTTTGGCCCACTAAGTGATATAATTCGGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGTGTTTGAATGTTTGGCCCACTAAGTGATATAATTCGGAGATG  385

seq1  TGCCCTTTTTGGAGTAGGTATGACCTTGTTGGAGGAAGTGTGTCCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTTGGAGTAGGTATGACCTTGTTGGAGGAAGTGTGTCCCTGTA  435

seq1  GGGTTAGGCTTTTCTTTGTAGTTTACAATTTCACTTTTGAGAAATGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGCTTTTCTTTGTAGTTTACAATTTCACTTTTGAGAAATGCATT  485

seq1  TGTTTATATGTATGTGTATGTTTTACATGCATGTATTTCCATGGAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATGTATGTGTATGTTTTACATGCATGTATTTCCATGGAACACT  535

seq1  ATGACTACCACATTTCCCTGAAAATCCAGAGAAGCAAGAACACTCCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACCACATTTCCCTGAAAATCCAGAGAAGCAAGAACACTCCTAAG  585

seq1  ACTTATGCAAGCATACCCACAGTTCCTCAACACTGAGCTATCCAAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCAAGCATACCCACAGTTCCTCAACACTGAGCTATCCAAACACT  635

seq1  AAATCTCTCTCTCTCTCTCTCTGATTTCTTCTCTCTGTGTTTTCTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCTCTCTCTCTCTCTGATTTCTTCTCTCTGTGTTTTCTTTTTC  685

seq1  TCCTTCTTACTTTCTGTCTGTCTCTCAGTATTTTGTCTCCTATCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTACTTTCTGTCTGTCTCTCAGTATTTTGTCTCCTATCTTTCTC  735

seq1  TCTGTGTCTCACTCTCTCTATCTCTGTCTCTTTCTGTTGTTGTCTGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTCACTCTCTCTATCTCTGTCTCTTTCTGTTGTTGTCTGTCCC  785

seq1  TCTGTCTTTGTGTGTGTGTGTCTCTATCTGTATGTATGTATGTATGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGTGTGTGTGTGTCTCTATCTGTATGTATGTATGTATGTATG  835

seq1  TATGTATGTATGTCTACCTATCAACATATCATTCTATATTTCTCTATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTCTACCTATCAACATATCATTCTATATTTCTCTATCAA  885

seq1  TGAGAACTAGGGCTGCAGGAGGCCAGACTCACAGGAAATCACTTAGAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTAGGGCTGCAGGAGGCCAGACTCACAGGAAATCACTTAGAATC  935

seq1  AGCAGACCTGGACAGGGTCCACACATGTCCTTATTTATTTTACACCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCTGGACAGGGTCCACACATGTCCTTATTTATTTTACACCTCTG  985

seq1  ATCTTCAGCCTTCTCTAAGAATTCCCAGTGGGAGTGATAGAGACTGGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGCCTTCTCTAAGAATTCCCAGTGGGAGTGATAGAGACTGGCAT  1035

seq1  AATTGGTCATGGAAAGATTAACCACTGGGTGAGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCATGGAAAGATTAACCACTGGGTGAGGAATTC  1074

seq1: chr5_18084511_18084577
seq2: B6Ng01-021E15.g_452_518 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      | | || | ||||||||
seq2  CATATTTCAAGTTGGAA  67