BAC Information

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BAC

Clone NameB6Ng01-021J09
Chromosome5 (Build37)
Map Location 21,689,476 - 21,812,619
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J09.bB6Ng01-021J09.g
ACCDH854048DH854049
length6151,041
definitionDH854048|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J09, 5' end.DH854049|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,812,005 - 21,812,619)(21,689,476 - 21,690,522)
sequence
gaattcacccaaacactgggctgggctaatgaaacccatccagaggccac
atatgactagaaggactatttatgatctctcaaaaataaattgaccttct
gggtaaagttagtatgaacagagacagcacatcaagtttcctggcttcta
attaattgactaattattctctgcttctttccgtccccatttgatcctcc
cattctagttcctcctgtccatctataactatctattctgttttgctttc
ctagtgagatctttctctcctgcctttccaagtcccttactctattccca
acctctatgattgtacatattgtagcttggttatcattgatagctaatat
ccacatttgagtgagtgcatatcatacttatctttctgggttttgggtta
cctcactcaggatgattttcttttctagttccatccatttacctgcaagt
ttcatgatttcattttttaatggccaagtaatattccattgtataagtat
accactttttgtttgtttttgtttgtttgtttttcaagacagagtttctc
tatataacaaacaaacaaaaatcgggaagaggtaaggtaggtgtgtgtgt
gtgttgtgagaaaaa
gaattctacacaactctgaatgagtaactaatcttgtacaatcaataacg
tcttctaagataagagagggagcaccgtgttccagcactttctgtgaagc
cagtctcatgcactggagcctgactctacaaggaagatggcagaaagcca
actggggccataatttatccttctgtgtctcctgattgtgggtgcagcgc
gagcagctgacccctgttcctgccacaaaagactgacccctcgaacggtg
agccaagacaaagcctggtttcttaaagctgcgtttggcagccattttgt
catacgacgtgagacgtacactggtaataaaaagtaggtacaatggtagg
taataatacccaaatagacctacatactaagcacagtgtatctcaaaaag
ccgccaagctgacaaacttgaaattctcgtataaatgcaaaggactggga
gaatcagaatgacctgggtgaagcagagaatttgtgaacttgtacttcct
gatttcaaaactgaccatgaagttgcaattaataaatcagtgtgttactg
acgtaaagaaaaacagatcaactgaggctggggtgaaggtataaacatgg
gaaccagggtgagccaagtccccagtacccacataaaaggccgactcggg
cagtacacacacacacacacacacagtctgaaggctggggaggcagagag
aggggagaatcctggggcttgctggccagcaagatttccctacggattga
acttcaacttaagggatggattctgtcttaaaatataaaagtagacaggc
acccaccataaacttcctcatgtacatatacacatatgctcatgggcata
caacacatgcacatgacactgaaaacatatgttcagacaaaaaaatgatt
acacagtattttgaggagcatcacaaataattggcaaaagccaaaacaac
ttaaatgttctaccaatagaggaatgggctggatagatggcgcctttcca
tgaagtgagtctcactcaccgcaggaaggatgaagtactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21812005_21812619
seq2: B6Ng01-021J09.b_44_658 (reverse)

seq1  TTTTTCTCACAACACACACACACACCTACCTTACCTCTTCCCGATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCACAACACACACACACACCTACCTTACCTCTTCCCGATTTTTG  50

seq1  TTTGTTTGTTATATAGAGAAACTCTGTCTTGAAAAACAAACAAACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTATATAGAGAAACTCTGTCTTGAAAAACAAACAAACAAAAA  100

seq1  CAAACAAAAAGTGGTATACTTATACAATGGAATATTACTTGGCCATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAGTGGTATACTTATACAATGGAATATTACTTGGCCATTAAA  150

seq1  AAATGAAATCATGAAACTTGCAGGTAAATGGATGGAACTAGAAAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATCATGAAACTTGCAGGTAAATGGATGGAACTAGAAAAGAAAA  200

seq1  TCATCCTGAGTGAGGTAACCCAAAACCCAGAAAGATAAGTATGATATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGAGTGAGGTAACCCAAAACCCAGAAAGATAAGTATGATATGCA  250

seq1  CTCACTCAAATGTGGATATTAGCTATCAATGATAACCAAGCTACAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAAATGTGGATATTAGCTATCAATGATAACCAAGCTACAATATG  300

seq1  TACAATCATAGAGGTTGGGAATAGAGTAAGGGACTTGGAAAGGCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCATAGAGGTTGGGAATAGAGTAAGGGACTTGGAAAGGCAGGAGA  350

seq1  GAAAGATCTCACTAGGAAAGCAAAACAGAATAGATAGTTATAGATGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTCACTAGGAAAGCAAAACAGAATAGATAGTTATAGATGGACA  400

seq1  GGAGGAACTAGAATGGGAGGATCAAATGGGGACGGAAAGAAGCAGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACTAGAATGGGAGGATCAAATGGGGACGGAAAGAAGCAGAGAAT  450

seq1  AATTAGTCAATTAATTAGAAGCCAGGAAACTTGATGTGCTGTCTCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCAATTAATTAGAAGCCAGGAAACTTGATGTGCTGTCTCTGTTC  500

seq1  ATACTAACTTTACCCAGAAGGTCAATTTATTTTTGAGAGATCATAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACTTTACCCAGAAGGTCAATTTATTTTTGAGAGATCATAAATAG  550

seq1  TCCTTCTAGTCATATGTGGCCTCTGGATGGGTTTCATTAGCCCAGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGTCATATGTGGCCTCTGGATGGGTTTCATTAGCCCAGCCCAG  600

seq1  TGTTTGGGTGAATTC  615
      |||||||||||||||
seq2  TGTTTGGGTGAATTC  615

seq1: chr5_21689476_21690522
seq2: B6Ng01-021J09.g_66_1106

seq1  GAATTCTACACAACTCTGAATGAGTAACTAATCTTGTACAATCAATAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAACTCTGAATGAGTAACTAATCTTGTACAATCAATAACG  50

seq1  TCTTCTAAGATAAGAGAGGGAGCACCGTGTTCCAGCACTTTCTGTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAGATAAGAGAGGGAGCACCGTGTTCCAGCACTTTCTGTGAAGC  100

seq1  CAGTCTCATGCACTGGAGCCTGACTCTACAAGGAAGATGGCAGAAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCATGCACTGGAGCCTGACTCTACAAGGAAGATGGCAGAAAGCCA  150

seq1  ACTGGGGCCATAATTTATCCTTCTGTGTCTCCTGATTGTGGGTGCAGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCCATAATTTATCCTTCTGTGTCTCCTGATTGTGGGTGCAGCGC  200

seq1  GAGCAGCTGACCCCTGTTCCTGCCACAAAAGACTGACCCCTCGAACGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGACCCCTGTTCCTGCCACAAAAGACTGACCCCTCGAACGGTG  250

seq1  AGCCAAGACAAAGCCTGGTTTCTTAAAGCTGCGTTTGGCAGCCATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACAAAGCCTGGTTTCTTAAAGCTGCGTTTGGCAGCCATTTTGT  300

seq1  CATACGACGTGAGACGTACACTGGTAATAAAAAGTAGGTACAATGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGACGTGAGACGTACACTGGTAATAAAAAGTAGGTACAATGGTAGG  350

seq1  TAATAATACCCAAATAGACCTACATACTAAGCACAGTGTATCTCAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACCCAAATAGACCTACATACTAAGCACAGTGTATCTCAAAAAG  400

seq1  CCGCCAAGCTGACAAACTTGAAATTCTCGTATAAATGCAAAGGACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAAGCTGACAAACTTGAAATTCTCGTATAAATGCAAAGGACTGGGA  450

seq1  GAATCAGAATGACCTGGGTGAAGCAGAGAATTTGTGAACTTGTACTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAATGACCTGGGTGAAGCAGAGAATTTGTGAACTTGTACTTCCT  500

seq1  GATTTCAAAACTGACCATGAAGTTGCAATTAATAAATCAGTGTGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAACTGACCATGAAGTTGCAATTAATAAATCAGTGTGTTACTG  550

seq1  ACGTAAAGAAAAACAGATCAACTGAGGCTGGGGTGAAGGTATAAACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAGAAAAACAGATCAACTGAGGCTGGGGTGAAGGTATAAACATGG  600

seq1  GAACCAGGGTGAGCCAAGTCCCCAGTACCCACATAAAAGGCCGACTCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGGTGAGCCAAGTCCCCAGTACCCACATAAAAGGCCGACTCGGG  650

seq1  CAGTACACACACACACACACACACAGTCTGAAGGCTGGGGAGGCAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACACACACACACACACACAGTCTGAAGGCTGGGGAGGCAGAGAG  700

seq1  AGGGGAGAATCCTGGGGCTTGCTGGCCAGCAAGATTTCCCTACGGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAATCCTGGGGCTTGCTGGCCAGCAAGATTTCCCTACGGATTGA  750

seq1  ACTTCAACTTAAGGGATGGATTCTGTCTTAAAATAT-AAAGTAGACAGGC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTCAACTTAAGGGATGGATTCTGTCTTAAAATATAAAAGTAGACAGGC  800

seq1  ACCCACCATAAAC-TCCTCATGTACATATACACATATGCTCAGGGGCATA  848
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACCCACCATAAACTTCCTCATGTACATATACACATATGCTCATGGGCATA  850

seq1  CAAACACATGCACATGACAACTGAAAACATATGTTCAGACAAAAAAAATG  898
      | |||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  C-AACACATGCACATGAC-ACTGAAAACATATGTTCAGAC-AAAAAAATG  897

seq1  TATACACAAGTATTTTGAGGAGCATCACAAATAATTGGCAAAAAGCAGAA  948
        ||||| ||||||||||||||||||||||||||||||| ||||||  ||
seq2  ATTACAC-AGTATTTTGAGGAGCATCACAAATAATTGGC-AAAAGCCAAA  945

seq1  ACAACTTAAATG-TCTAGCAACAGAGGAAT-GGCTGGATAGAATGCGGCC  996
      |||||||||||| |||| ||| |||||||| |||||||||| |||  |||
seq2  ACAACTTAAATGTTCTACCAATAGAGGAATGGGCTGGATAG-ATGGCGCC  994

seq1  TTATCCATGAAGTGGAGTCTCACTCAACCGCAGGGAGGGATGAAGTACTC  1046
      || |||||||||| ||||||||||| |||||| ||| |||||||||||||
seq2  TT-TCCATGAAGT-GAGTCTCACTC-ACCGCA-GGAAGGATGAAGTACTC  1040

seq1  A  1047
      |
seq2  A  1041