BAC Information

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BAC

Clone NameB6Ng01-021L17
Chromosome5 (Build37)
Map Location 84,673,096 - 84,822,472
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021L17.bB6Ng01-021L17.g
ACCDH854153DH854154
length1,0981,068
definitionDH854153|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L17, 5' end.DH854154|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,673,096 - 84,674,094)(84,821,401 - 84,822,472)
sequence
gaattctcaacagaggaatcttgaatggctgagaaggtcctaaagaaatg
ttcaacactcttaattatcagagaaatgcaaatcaaaatgaccctgagat
gccacctcaaaccaatcaggatggctaagatcaaaaaacgcaagcagcaa
tctatgcaggcaagggggtggagcaaggagaaaactcctccatttctggt
gggattgaaagctgaacaatcactctggaaatcagtctggtggttcatga
gaaaattggaaataattctaccggaagacacagttataccactcctggaa
atatatcttaaaaatgattgtccatacaaaaaggacatatgctccacgat
gtttatagcaaccatatttgtaatagctagaaattgcaaacaacccagat
gtccctcaactgaagaatggacacaaaatgtgggtcatttacacaataca
atactattcggctattaaaaataaggacatcattctgagcgacattaccc
agatcctaaggacatgcattttatgtactaattgataagttgatattagc
caaaaagttcagaatacctatgacacaactcccagacataggaatcttaa
ctagttctggttctagctctttttttctcttagtggcaaatgcatatcaa
tttagatattaaaataacagtacaaattgagtaggatatataaaattgag
ttgcgatgaaaaatattttaaacgttacatgtttctctatttgtcaaaaa
aagcctttattaagtagtcaaatttcagttaacaaaaataaatatctgtg
tggtttaagataaataggcagagtacttatttttattttcacactgcttg
cttgcaagttaaagaactgaatttctaatcccagagtttattattgaaaa
attaaagtagtgcctacttgtactttcctactaaaagtgtgtaaactccc
aaaatctgggttgactggaaatcatggctcttgtgaaatgacacgtagct
tgtcatctgactcctagcgccataatcattccacccatccactaccagat
tattcagtccacccatagctacagacttgaccttatatttgcatgtat
gaattccaggaacaaacattagtgcttattatctatcactaagacctcat
gtactgtgacatgttcttttactccttgtttccatgatacaattgtgatc
agaacactggtgttctcattgaacgttttgaagaatttctaagatgagta
tataaaagagtatatatttctcaaactattgcataaaatacaaactgaag
gaacactacctaacttattctatgaagccacaattactctgatacctaag
ccacgttaggacccaaccaaaaaacagaacttcagaaaaatctcacttat
gaatattgatgcaaaaatacccaatatataagttatataattgcacagct
ctcccatgattcagtaaatacattgtttgcttattttatttttatattga
tgagaagcttataattagaaaaaaataaactctcttgcattcattatcca
tgagattttgcattgctatgggtttctgtctttaaggcaaatacatcaga
aatctatgtaatattcctcaacctgtagcataactttttacccaatttac
aaatgtaattttccaatgagaaatatatgtttcttaactctttactcatg
actggtagctgctcactgtcccctgaagcagttgacaaactataaagtca
agccttgaaaccagaaaacgtatatgggctgactggattcatggagagag
ggcaggacagctgtgtcttttgtggtttgctcccacaaaattagtttaaa
tattgactttttttcaaacattcatatatcagtagagatctaactggtat
tataaatgtttgctaatttgagcatcatgaaagggaaagtaacagtagca
gagtacgaatataccttcttacactgggattcctttgttgtcctcaggga
ttatatattttttcaccatttgttgatggtgacaatatcaaagattccta
ttgattattaattgactgaaatatatttattctgtgtgctttttcctcaa
agtgcagtgcattttttgtgtcttatgactcatctagcatatattgaaag
aaattgaagtgctccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84673096_84674094
seq2: B6Ng01-021L17.b_155_1145

seq1  CAAACCAATCAGGATGGCTAAGATCAAAAAACGCAAGCAGCAATCTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATCAGGATGGCTAAGATCAAAAAACGCAAGCAGCAATCTATGC  50

seq1  AGGCAAGGGGGTGGAGCAAGGAGAAAACTCCTCCATTTCTGGTGGGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGGGGTGGAGCAAGGAGAAAACTCCTCCATTTCTGGTGGGATTG  100

seq1  AAAGCTGAACAATCACTCTGGAAATCAGTCTGGTGGTTCATGAGAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAACAATCACTCTGGAAATCAGTCTGGTGGTTCATGAGAAAATT  150

seq1  GGAAATAATTCTACCGGAAGACACAGTTATACCACTCCTGGAAATATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATTCTACCGGAAGACACAGTTATACCACTCCTGGAAATATATC  200

seq1  TTAAAAATGATTGTCCATACAAAAAGGACATATGCTCCACGATGTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGATTGTCCATACAAAAAGGACATATGCTCCACGATGTTTATA  250

seq1  GCAACCATATTTGTAATAGCTAGAAATTGCAAACAACCCAGATGTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATATTTGTAATAGCTAGAAATTGCAAACAACCCAGATGTCCCTC  300

seq1  AACTGAAGAATGGACACAAAATGTGGGTCATTTACACAATACAATACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGAATGGACACAAAATGTGGGTCATTTACACAATACAATACTAT  350

seq1  TCGGCTATTAAAAATAAGGACATCATTCTGAGCGACATTACCCAGATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTATTAAAAATAAGGACATCATTCTGAGCGACATTACCCAGATCCT  400

seq1  AAGGACATGCATTTTATGTACTAATTGATAAGTTGATATTAGCCAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATGCATTTTATGTACTAATTGATAAGTTGATATTAGCCAAAAAG  450

seq1  TTCAGAATACCTATGACACAACTCCCAGACATAGGAATCTTAACTAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATACCTATGACACAACTCCCAGACATAGGAATCTTAACTAGTTC  500

seq1  TGGTTCTAGCTCTTTTTTTCTCTTAGTGGCAAATGCATATCAATTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTAGCTCTTTTTTTCTCTTAGTGGCAAATGCATATCAATTTAGAT  550

seq1  ATTAAAATAACAGTACAAATTGAGTAGGATATATAAAATTGAGTTGCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAACAGTACAAATTGAGTAGGATATATAAAATTGAGTTGCGAT  600

seq1  GAAAAATATTTTAAACGTTACATGTTTCTCTATTTGTCAAAAAAAGCC-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAAATATTTTAAACGTTACATGTTTCTCTATTTGTCAAAAAAAGCCTT  650

seq1  TATTAAGTAGTCAAATTTCAGTTAACAAAAATAAATATCTGTGTGG-TTA  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTAAGTAGTCAAATTTCAGTTAACAAAAATAAATATCTGTGTGGTTTA  700

seq1  AGATAAATAGGCAGAGTACTTATTTTAATTTTCACACTGCTTGCTTGCAA  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATAAATAGGCAGAGTACTTATTTTTATTTTCACACTGCTTGCTTGCAA  750

seq1  GTTAAAGAACTGAA-TTCTAATCCCAGAGTTTA-TATTGAAAAATTAAAG  796
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GTTAAAGAACTGAATTTCTAATCCCAGAGTTTATTATTGAAAAATTAAAG  800

seq1  TAGTGCCTACTTGTACCTTCCTACTAAAAGTGTGTAAACTCCCAAAATCT  846
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTGCCTACTTGTACTTTCCTACTAAAAGTGTGTAAACTCCCAAAATCT  850

seq1  GGGTTGACTTGGAAATCATGGCTCTTGTGAAATGACACGTAAGCTTGTCA  896
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GGGTTGAC-TGGAAATCATGGCTCTTGTGAAATGACACGT-AGCTTGTCA  898

seq1  TCTGACTCCCAAGCGCACATAAATCCATTCCCACCCATCCACACACAGAA  946
      ||||||| || ||||| |||||   |||| ||||||||||||   ||| |
seq2  TCTGACT-CCTAGCGC-CATAA--TCATT-CCACCCATCCACTACCAG-A  942

seq1  TAATTCAGCCCACCCAAAAGCTACAAGACTTGACCCTATAATTTGCAATG  996
      | |||||| |||||| | |||||| |||||||||| ||| |||||| |||
seq2  TTATTCAGTCCACCC-ATAGCTAC-AGACTTGACCTTAT-ATTTGC-ATG  988

seq1  TAT  999
      |||
seq2  TAT  991

seq1: chr5_84821401_84822472
seq2: B6Ng01-021L17.g_67_1134 (reverse)

seq1  TTTGGAGCTACTTCATTTTC-TTCAATATATTGCTAAGATGAGTCATTAA  49
      | |||||| |||||| |||| ||||||||| |||| |||||||||| |||
seq2  TATGGAGC-ACTTCAATTTCTTTCAATATA-TGCT-AGATGAGTCA-TAA  46

seq1  GACCACAAAAAATGCACTGCACTATTGAGGGAAAAAGCACACAAGAATAA  99
      || |||||||||||||||||||| |||| ||||||||||||| |||||||
seq2  GA-CACAAAAAATGCACTGCACT-TTGA-GGAAAAAGCACAC-AGAATAA  92

seq1  ATATATTTTCAGTCATTTAATAGTCAATAGG-ATCTTTGATATTGTCACC  148
      ||||| ||||||||| |||||| |||||||| ||||||||||||||||||
seq2  ATATA-TTTCAGTCAATTAATAATCAATAGGAATCTTTGATATTGTCACC  141

seq1  ATCCACATATGGTGAAAAAAATATATAATCCTTGAGGACAACAAGGGAAT  198
      ||| ||| |||||| |||||||||||||||| |||||||||||| |||||
seq2  ATCAACAAATGGTG-AAAAAATATATAATCCCTGAGGACAACAAAGGAAT  190

seq1  -CCAGTGTAAGAAGGTATATTCGTACTCTGCTACTGTTACTTT-CCTTTC  246
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCAGTGTAAGAAGGTATATTCGTACTCTGCTACTGTTACTTTCCCTTTC  240

seq1  ATGATGCTCAAATTAGCAAACATTTATAATACCAGTTAGATCTCTACTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTCAAATTAGCAAACATTTATAATACCAGTTAGATCTCTACTGA  290

seq1  TATATGAATGTTTGAAAAAAAGTCAATATTTAAACTAA-TTTGTGGGAGC  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATATGAATGTTTGAAAAAAAGTCAATATTTAAACTAATTTTGTGGGAGC  340

seq1  AAACCAC-AAAGACACAGCTGTCCTGCCCTCTCTCCATGAATCCAGTCAG  394
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAAAAGACACAGCTGTCCTGCCCTCTCTCCATGAATCCAGTCAG  390

seq1  CCCATATACGTTTTCTGGTTTCAAGGCTTGACTTTATAGTTTGTCAACTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATACGTTTTCTGGTTTCAAGGCTTGACTTTATAGTTTGTCAACTG  440

seq1  CTTCAGGGGACAGTGAGCAGCTACCAGTCATGAGTAAAGAGTTAAGAAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGGACAGTGAGCAGCTACCAGTCATGAGTAAAGAGTTAAGAAAC  490

seq1  ATATATTTCTCATTGGAAAATTACATTTGTAAATTGGGTAAAAAGTTATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTCATTGGAAAATTACATTTGTAAATTGGGTAAAAAGTTATG  540

seq1  CTACAGGTTGAGGAATATTACATAGATTTCTGATGTATTTGCCTTAAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTTGAGGAATATTACATAGATTTCTGATGTATTTGCCTTAAAGA  590

seq1  CAGAAACCCATAGCAATGCAAAATCTCATGGATAATGAATGCAAGAGAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCATAGCAATGCAAAATCTCATGGATAATGAATGCAAGAGAGT  640

seq1  TTATTTTTTTCTAATTATAAGCTTCTCATCAATATAAAAATAAAATAAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCTAATTATAAGCTTCTCATCAATATAAAAATAAAATAAGC  690

seq1  AAACAATGTATTTACTGAATCATGGGAGAGCTGTGCAATTATATAACTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTATTTACTGAATCATGGGAGAGCTGTGCAATTATATAACTTA  740

seq1  TATATTGGGTATTTTTGCATCAATATTCATAAGTGAGATTTTTCTGAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGGTATTTTTGCATCAATATTCATAAGTGAGATTTTTCTGAAGT  790

seq1  TCTGTTTTTTGGTTGGGTCCTAACGTGGCTTAGGTATCAGAGTAATTGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTGGTTGGGTCCTAACGTGGCTTAGGTATCAGAGTAATTGTG  840

seq1  GCTTCATAGAATAAGTTAGGTAGTGTTCCTTCAGTTTGTATTTTATGCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGAATAAGTTAGGTAGTGTTCCTTCAGTTTGTATTTTATGCAA  890

seq1  TAGTTTGAGAAATATATACTCTTTTATATACTCATCTTAGAAATTCTTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAGAAATATATACTCTTTTATATACTCATCTTAGAAATTCTTCA  940

seq1  AAACGTTCAATGAGAACACCAGTGTTCTGATCACAATTGTATCATGGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTCAATGAGAACACCAGTGTTCTGATCACAATTGTATCATGGAAA  990

seq1  CAAGGAGTAAAAGAACATGTCACAGTACATGAGGTCTTAGTGATAGATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGTAAAAGAACATGTCACAGTACATGAGGTCTTAGTGATAGATAA  1040

seq1  TAAGCACTAATGTTTGTTCCTGGAATTC  1072
      ||||||||||||||||||||||||||||
seq2  TAAGCACTAATGTTTGTTCCTGGAATTC  1068