BAC Information

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BAC

Clone NameB6Ng01-021N13
Chromosome5 (Build37)
Map Location 135,139,776 - 135,140,429
singlet/doubletsinglet
Overlap geneLimk1
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081
Downstream geneEln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N13.bB6Ng01-021N13.g
ACCDH854241DH854242
length1,208655
definitionDH854241|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N13, 5' end.DH854242|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagttttatgtttgataccaaattccttacaaaatgaagtaaaa
ttgttgccagtataagatggcccattatctgtcttaatgagtttaggcaa
ttccatagcattaaaggcttgtaaacaatgatcaattacatttctagagg
cctctctggtatgtagagaagcaaaaagaaatcctgaacaagtattaata
caaacatgtatatattttaattttccaaattccgcataatgagttacatc
catttgcagcaattgattaagtataagtcctcaagaattaacaccattat
gtggaaacaggtaggaactgaggacagtaagaacaattttttttttacaa
tttgacatgtacattctctaaaaataccaaaatattatcttaagccatta
ttgttttgattgtataaagaacgagactatatggccaattattcttatgt
aaagcctataatctgcctgagatataaatctagcatggcattgccttaag
gtcttgtccaggcaatctaggacaaattcttaaatgtccaaaaacagtct
tctaaaaagaacagcattttttcttatgagttgtatatgcataaatcatt
gcaaatttgagaatttatagtatctgagggatgaacaattttaagcaatt
gtaagctctgagatataatattgactattaatatacaaattaaagcttga
taattcaacattttaaaacatcatctacagcacacattttaattatctgt
gctgaagcaggaggaaactcaaaagaataagcatgtgatccaattcacat
atacttttctcccatagaagggctgtttttaaacacagtaaatgggatgc
atgcatgcatgaatttatagagcgtacaaaagcatgcataaaacatttta
acttatctttagagagtgactatcattttatttaaatgatggtaagcata
gccaaatatcaatattctctataaccaatttaattgctgttggaacaagg
aaagaacactttgtcaggttttaagatacatttttgttaagtttttctaa
ataatgattactacaatctaatagccctagcagccttaatgatgttaaac
ttactttgaggtgagagaaagagatttaattaagttccttgcagatgccg
ggcattaactacctatagcgctattatactgataatgaacaataaggcct
tatttccg
gaattcactctgtagaccaggctggccttgaactcagagatccgtcgctg
cctcctgagtgctgggactaaaaggtgtgcgccacggctggtgccaccac
caccactacctcagggcttgagagagactcttaaacagaagacacggtgg
ctccccgtgtgagaggagactgggtgccctgctgtctaggcagggcagag
caagggaagaaggtccaggcccagcctgtgtgtgctcctgcaggtaaagg
tcatgcgctgcctggagcaccctaacgtgctcaagttcatcggagtgctc
tacaaggacaagcggctaaacttcatcacagagtacatcaagggcggcac
cctgcggggcatcatcaagaacatggtgagcagggttggggctggggtgt
ggcttggttggtagagtgctggcctaagctggcatacatgcgactttggc
ttccatcccaagcactgcataaacctaatgtaggccccaccccttttaat
cctagcacgatggaaaccagtgggtcttatgagttcaaggccagtccagt
ctacagagcgagttccatgccagccagggctacataaacaatgagaccct
ttctaaatacacactccaaaacaaaaaaagtaagaaagggggattgggga
gaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135139776_135140429
seq2: B6Ng01-021N13.g_72_726 (reverse)

seq1  CTTTCTCCCCAATCCCCCTTTCTTACTTTTTTTGTTTTGGTGTGTGTATT  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTCTCCCCAATCCCCCTTTCTTACTTTTTTTGTTTTGGAGTGTGTATT  50

seq1  TAGAAAGGGTCTCATTGTTTATGTAGCCCTGGCTGGCATGGAACTCGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGTCTCATTGTTTATGTAGCCCTGGCTGGCATGGAACTCGCTC  100

seq1  TGTAGACTGGACTGGCCTTGAACTCATAAGACCCACTGGTTTCCCTCGTG  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTAGACTGGACTGGCCTTGAACTCATAAGACCCACTGGTTTCCATCGTG  150

seq1  CTAGGATT-AAAGGGGTGGGGCCTACATTAGGTTTATGCAGTGCTTGGGA  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTAAAAGGGGTGGGGCCTACATTAGGTTTATGCAGTGCTTGGGA  200

seq1  TGGAAGCCAAAGTCGCATGTATGCCAGCTTAGGCCAGCACTCTACCAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAAAGTCGCATGTATGCCAGCTTAGGCCAGCACTCTACCAACC  250

seq1  AAGCCACACCCCAGCCCCAACCCTGCTCACCATGTTCTTGATGATGCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACACCCCAGCCCCAACCCTGCTCACCATGTTCTTGATGATGCCCC  300

seq1  GCAGGGTGCCGCCCTTGATGTACTCTGTGATGAAGTTTAGCCGCTTGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGCCGCCCTTGATGTACTCTGTGATGAAGTTTAGCCGCTTGTCC  350

seq1  TTGTAGAGCACTCCGATGAACTTGAGCACGTTAGGGTGCTCCAGGCAGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGCACTCCGATGAACTTGAGCACGTTAGGGTGCTCCAGGCAGCG  400

seq1  CATGACCTTTACCTGCAGGAGCACACACAGGCTGGGCCTGGACCTTCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTTACCTGCAGGAGCACACACAGGCTGGGCCTGGACCTTCTTC  450

seq1  CCTTGCTCTGCCCTGCCTAGACAGCAGGGCACCCAGTCTCCTCTCACACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCTGCCCTGCCTAGACAGCAGGGCACCCAGTCTCCTCTCACACG  500

seq1  GGGAGCCACCGTGTCTTCTGTTTAAGAGTCTCTCTCAAGCCCTGAGGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCACCGTGTCTTCTGTTTAAGAGTCTCTCTCAAGCCCTGAGGTAG  550

seq1  TGGTGGTGGTGGCACCAGCCGTGGCGCACACCTTTTAGTCCCAGCACTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGTGGCACCAGCCGTGGCGCACACCTTTTAGTCCCAGCACTCA  600

seq1  GGAGGCAGCGACGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCGACGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  650

seq1  AATTC  654
      |||||
seq2  AATTC  655