BAC Information

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BAC

Clone NameB6Ng01-022A15
Chromosome5 (Build37)
Map Location 57,025,126 - 57,127,078
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A15.bB6Ng01-022A15.g
ACCDH854377DH854378
length1,066987
definitionDH854377|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A15, 5' end.DH854378|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,126,006 - 57,127,078)(57,025,126 - 57,025,956)
sequence
gaattccataaaaaaatcaaattgcaatttttaaatagatggacaagaaa
aatgaaacaaagagctcagtggaaagcttataaaatggattagttcaact
aaaaggcagagtatgaggtcttaaagactagtgagcttaattagaatatt
cagagaacaaagaaaagaacagaacacctaaaacttttcacagaagcact
gaggcacataaaaagttaggcccatcagtataacagatttctcagtaaaa
actcatcaaagccaaagaggtcactgagtgaagtattttaagctcttaaa
ggtgagaactaacaccacagcttaataagatcactatatttctagatcat
caaggctatcactaataattgaaggaaaaaggaaaagcttttcaaatgaa
tataaactaaagactctgtgattaccaattgaaaattacaatacataatt
gaagggactctagtaacaaaataaaggtaaaaacaaccgatgttaagcta
aaaaaaaaaaaaaaaaacaaacaacaacaaaaaacgacgagacaaacttt
aattgtttgtttcatacagtgttttgaaaatctgtgcattatttctagac
tgtaaatgattcttgttaaagttttaacatctatatgaagctactagcaa
ttatttcttttctttttgggggatatagattttattgttttcagtattac
attttaactacattataggtttgttcactcacagtcattcatcaaatgag
gagggttataattcaaggcaagaagacttgttaggcacaagatataaatt
taattaaactcatataaaatactaagtttaggaacagaggttaacttaaa
atattctggcttatgcaaagatgaattattgaatcaaaactatgaattta
caaaatttagaagccaaacattcactaatcttgagatacaatagacacag
ttatatacctgaatagattgtacatatttgtcttacctcaaatcagagat
tattagaatgacaaagggaattcctatttcacatgagaataatataaaat
attgacactgggtaag
gaattcagtaagaatgttacctattcagtaacattcaaattcacttctag
tagagacagtgaaactaattaggcattacaatttacttgaatagagctag
aaaagcttagggcttgtctccatagtaattacttaggacagtagccgagt
cacacccctacacagggaatacacaatggcataggaaataggtgggttgt
agtattattcatcaaagagttagtagaatggaattcccctcttgcaagtt
tttcactaggcccagaggaatagcataatcatgtatttactaaaggaccc
ctgatggtggatttaacaatagactaggattttatcagagcattcacctg
gctcctgtgtttagctgatcttaattaagggttgttcctattctcagttg
taaacatggcctggctcccactatctttttatgtatgcattctctttgtt
ttatgtaagaaccagtgtaccttggcaaatgtatttgcctagccttcttg
ttattcgtctgcaatataagactggtgctcaatttgacaaattacattca
gataccacactcccttgtgttcatatttgtcatttcttgccaacttcttg
cctgcctgtaacctgaaccctgagttttgcccgtggatagaggacccaag
taaggtccatctgcagcaaataaaagtcaatatttggcttacacacacac
acacacacacacacatacacacatttgcatagaaggttccatgaatggtc
agggtggtcctttttgagcaaacactcccagaacccaggaagcagtgggt
ggaggaatgtcactatctgttttatgatagcatatcttggggcattgaga
cacaaagtcacattctcaagcctgggcctaaagcctaattttatgttttt
tttttcactttttcattcccccttcatttgttagtagttctatactagaa
ctagcacaatcttgtccctgaacactgatccttaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57126006_57127078
seq2: B6Ng01-022A15.b_45_1110 (reverse)

seq1  CTTA-CCAATGTCAAATATTATTATATTATTATCCATTGTAAATAAGAAT  49
      |||| ||| |||| |||||| |||||||||| | |||   ||||| ||||
seq2  CTTACCCAGTGTC-AATATT-TTATATTATTCT-CATGTGAAATAGGAAT  47

seq1  TACCCTTTGTTCTTCTATTAATTTCTGTATTTGA-GTAAGAC-AATATGT  97
      | ||||||||  ||||| |||| |||| |||||| ||||||| |||||||
seq2  T-CCCTTTGTCATTCTAATAATCTCTG-ATTTGAGGTAAGACAAATATGT  95

seq1  ACAATCTAATTCAGGTATTATAACTGTTGTCTATTGTTATCTCAAGAATT  147
      ||||||| ||||||||| |||||||| ||||||||| ||||||||| |||
seq2  ACAATCT-ATTCAGGTA-TATAACTG-TGTCTATTG-TATCTCAAG-ATT  140

seq1  AGTGAATGTTTGGCTTCTAAATTTTGTAAATTCATAGTTTTGATTCAATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGTTTGGCTTCTAAATTTTGTAAATTCATAGTTTTGATTCAATA  190

seq1  ATTCATCTTTGCATAAGCCAGAATATTTTAAGTTAACCTCTGTTCCTAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTTGCATAAGCCAGAATATTTTAAGTTAACCTCTGTTCCTAAA  240

seq1  CTTAGTATTTTATATGAGTTTAATTAAATTTATATCTTGTGCCTAACAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTTTATATGAGTTTAATTAAATTTATATCTTGTGCCTAACAAG  290

seq1  TCTTCTTGCCTTGAATTATAACCCTCCTCATTTGATGAATGACTGTGAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCCTTGAATTATAACCCTCCTCATTTGATGAATGACTGTGAGT  340

seq1  GAACAAACCTATAATGTAGTTAAAATGTAATACTGAAAACAATAAAATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACCTATAATGTAGTTAAAATGTAATACTGAAAACAATAAAATCT  390

seq1  ATATCCCCCAAAAAGAAAAGAAATAATTGCTAGTAGCTTCATATAGATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCCCAAAAAGAAAAGAAATAATTGCTAGTAGCTTCATATAGATGT  440

seq1  TAAAACTTTAACAAGAATCATTTACAGTCTAGAAATAATGCACAGATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTAACAAGAATCATTTACAGTCTAGAAATAATGCACAGATTTT  490

seq1  CAAAACACTGTATGAAACAAACAATTAAAGTTTGTCTCGTCGTTTTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTGTATGAAACAAACAATTAAAGTTTGTCTCGTCGTTTTTTGT  540

seq1  TGTTGTTTGTTTTTTTTTTTTTTTTTTAGCTTAACATCGGTTGTTTTTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGTTTTTTTTTTTTTTTTTTAGCTTAACATCGGTTGTTTTTAC  590

seq1  CTTTATTTTGTTACTAGAGTCCCTTCAATTATGTATTGTAATTTTCAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTTACTAGAGTCCCTTCAATTATGTATTGTAATTTTCAATT  640

seq1  GGTAATCACAGAGTCTTTAGTTTATATTCATTTGAAAAGCTTTTCCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCACAGAGTCTTTAGTTTATATTCATTTGAAAAGCTTTTCCTTTT  690

seq1  TCCTTCAATTATTAGTGATAGCCTTGATGATCTAGAAATATAGTGATCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAATTATTAGTGATAGCCTTGATGATCTAGAAATATAGTGATCTT  740

seq1  ATTAAGCTGTGGTGTTAGTTCTCACCTTTAAGAGCTTAAAATACTTCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGTGGTGTTAGTTCTCACCTTTAAGAGCTTAAAATACTTCACT  790

seq1  CAGTGACCTCTTTGGCTTTGATGAGTTTTTACTGAGAAATCTGTTATACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTCTTTGGCTTTGATGAGTTTTTACTGAGAAATCTGTTATACT  840

seq1  GATGGGCCTAACTTTTTATGTGCCTCAGTGCTTCTGTGAAAAGTTTTAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCCTAACTTTTTATGTGCCTCAGTGCTTCTGTGAAAAGTTTTAGG  890

seq1  TGTTCTGTTCTTTTCTTTGTTCTCTGAATATTCTAATTAAGCTCACTAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTCTTTTCTTTGTTCTCTGAATATTCTAATTAAGCTCACTAGT  940

seq1  CTTTAAGACCTCATACTCTGCCTTTTAGTTGAACTAATCCATTTTATAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGACCTCATACTCTGCCTTTTAGTTGAACTAATCCATTTTATAAG  990

seq1  CTTTCCACTGAGCTCTTTGTTTCATTTTTCTTGTCCATCTATTTAAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACTGAGCTCTTTGTTTCATTTTTCTTGTCCATCTATTTAAAAAT  1040

seq1  TGCAATTTGATTTTTTTATGGAATTC  1073
      ||||||||||||||||||||||||||
seq2  TGCAATTTGATTTTTTTATGGAATTC  1066

seq1: chr5_57025126_57025956
seq2: B6Ng01-022A15.g_235_1052

seq1  TACACAATGGCATAGGAAATAGGTGGGTTGTAGTATTATTCATCAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGGCATAGGAAATAGGTGGGTTGTAGTATTATTCATCAAAGAG  50

seq1  TTAGTAGAATGGAATTCCCCTCTTGCAAGTTTTTCACTAGGCCCAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAATGGAATTCCCCTCTTGCAAGTTTTTCACTAGGCCCAGAGGA  100

seq1  ATAGCATAATCATGTATTTACTAAAGGACCCCTGATGGTGGATTTAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAATCATGTATTTACTAAAGGACCCCTGATGGTGGATTTAACAA  150

seq1  TAGACTAGGATTTTATCAGAGCATTCACCTGGCTCCTGTGTTTAGCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGGATTTTATCAGAGCATTCACCTGGCTCCTGTGTTTAGCTGAT  200

seq1  CTTAATTAAGGGTTGTTCCTATTCTCAGTTGTAAACATGGCCTGGCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAAGGGTTGTTCCTATTCTCAGTTGTAAACATGGCCTGGCTCCC  250

seq1  ACTATCTTTTTATGTATGCATTCTCTTTGTTTTATGTAAGAACCAGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTTTATGTATGCATTCTCTTTGTTTTATGTAAGAACCAGTGTA  300

seq1  CCTTGGCAAATGTATTTGCCTAGCCTTCTTGTTATTCGTCTGCAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAAATGTATTTGCCTAGCCTTCTTGTTATTCGTCTGCAATATAA  350

seq1  GACTGGTGCTCAATTTGACAAATTACATTCAGATACCACACTCCCTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGCTCAATTTGACAAATTACATTCAGATACCACACTCCCTTGTG  400

seq1  TTCATATTTGTCATTTCTTGCCAACTTCTTGCCTGCCTGTAACCTGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTGTCATTTCTTGCCAACTTCTTGCCTGCCTGTAACCTGAACC  450

seq1  CTGAGTTTTGCCCGTGGATAGAGGACCCAAGTAAGGTCCATCTGCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTGCCCGTGGATAGAGGACCCAAGTAAGGTCCATCTGCAGCAA  500

seq1  ATAAAAGTCAATATTTGGCTTACACACACACACACACACACACACATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTCAATATTTGGCTTACACACACACACACACACACACACATACA  550

seq1  CACATTTGCATAGAAGGTTCCATGAATGGTCAGGGTGGTCCTTTTTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGCATAGAAGGTTCCATGAATGGTCAGGGTGGTCCTTTTTGAGC  600

seq1  AAACACTCCCAGAACCCAGGAAGCAGGTGGGTGGAGGAATGTCACTATCT  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAACACTCCCAGAACCCAGGAAGCA-GTGGGTGGAGGAATGTCACTATCT  649

seq1  GTTTTATGATTAGCATATCTTGGGGCATTGAGACACAAAGGTCACATTCT  700
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTATGA-TAGCATATCTTGGGGCATTGAGACACAAA-GTCACATTCT  697

seq1  CAAGCCTGGGCCTAAAGGCCTAATTTTTATGTTTTTATGTTTCACTTTTT  750
      |||||||||||||||| |||||| |||||||||||| | |||||||||||
seq2  CAAGCCTGGGCCTAAA-GCCTAA-TTTTATGTTTTT-TTTTTCACTTTTT  744

seq1  CATTCCCCACTTCTATTTGTTAGTAGTTCTAATCTTAGAACTAGACACTA  800
      |||||||| |||| |||||||||||||||| ||  ||||||||| ||| |
seq2  CATTCCCC-CTTC-ATTTGTTAGTAGTTCT-ATACTAGAACTAG-CACAA  790

seq1  TCTTGTCCCTGACACACTTGATCCTTTAGGG  831
      |||||||||||| |||| |||||| ||||||
seq2  TCTTGTCCCTGA-ACAC-TGATCC-TTAGGG  818