BAC Information

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BAC

Clone NameB6Ng01-022M23
Chromosome5 (Build37)
Map Location 79,642,407 - 79,738,547
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M23.bB6Ng01-022M23.g
ACCDH854910DH854911
length1,0201,129
definitionDH854910|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M23, 5' end.DH854911|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,642,407 - 79,643,431)(79,737,416 - 79,738,547)
sequence
gaattcaacaggtgaaacaatataaagtcttgagattataagagatactg
gaaatatattgaaaaaaaacctaagcatatgaacatagaaaggtattata
atatttactaacttaataatggcttcttgggttgatacacaaattcatat
actgaagtgctaactaccagaaaactaaatgtgggtgtatttgcaaacag
gcctttacttaataaatgaatttatttattaaataaattcatataaaata
tttattaaatatttatttatatatactctaacctcctaaattcctaatga
cctttcaggtaaggaagggaagactcaattgtgagtgtgctgaagacttc
atgtagcacacaaggaactgctgtcttctatagatctctgagaagatact
aggagaaagtgctcctcacaaacccaagcagagctgacactccactcagc
atttctgagcatcaagagggaagtctctgtgccattttattatggaaatg
gaaatgctaatgctcacagtttcttacactgctttgctgaattcaacaag
attcagagtctccaacaagcaatgctttgtgaaggaaattttcaagcttc
cagtcactatggactttcctaaaaggctaatctcctgaggagtctcactt
agtctacagtacttagggttgattatatggtaatggataacctatagggg
gttttaggtctgggatgaaggcttattctccctctaaaagcacttctggt
tgaagttctttgtaaaggagtgggaacccataaacaaatcttctctttca
aaccaacaagtcccttactattgccattgtctaatttttgcatagctctt
cttagaggacactatttcacagcacacttcctggagttctgattctgcaa
cgtttctaccttctctgctaggatgtttactgagctataaaaccagaatg
tctgatgcagagcagtggttacatagaggacaaagccgcctcatccactg
gggtcttaagggagggattg
gaattctataaagtcagtaattcatctaaagagcattaattcacaaaagt
tcatcaaaagttgatctgcagagaacttgcctaatagggtgggctgaagc
ccaggagacaggaagacaggaaaggcatatcagcagcaagaagcagtcct
gcgatgaagtctctaaggaccctgcattcttagagctcatcattgcaggc
caaacaaaatggtgggccttctcctgaaaacttacatgtatgcctttagc
cttttctaggcatctggcagggctggccacagcatagattttaaaataat
tttagtgaatagattccaaataaaaagtgtcatgtaatacagtagaatga
atgtttagtatctcttgctgtaaccaaatcatttattctcagttaaatga
agaaatacttctagagaaacttttttggcttttactttatgataattttt
atggtgtacatttcttaattttctattcactaaggacaggatgaaagtaa
gtaccaatggaactgcgcttttccattgatgagaaataagaaaagtggga
aatatatgggtgaataataagcttattttagatttgagtgtaatgcattg
ttaagtatatgagcaatagtctcacagataaaaataagtattgtgtatat
aaagtgtgaaatgttagtattaaacttttgctttttttactgttatcttt
tacttaattatgcaggctatgaaaataagcagtttttacagattaaatat
cagtggaaaagagaaaccaagaagagtttggatcccttttgcatttatac
ataactgtatctctgtagtttatgcatcaattcagtgtgtaatatgacag
cataactgtgaaagggatggtctaatgttgttgtggattctttcttacca
ttacatatgtaaattaatgtgatgtacatacttacaaatctgtataggtt
tgactaaacctttacacctattttaggggtgatatttagactaagttcca
aataaatccaactataaagatactggaattcctctcgtaagaatttagtc
tacgcctggtgagaaatcttattgttctctggaaacaaatggactgtata
aaaaaaatgagtgacttacacttaagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79642407_79643431
seq2: B6Ng01-022M23.b_47_1066

seq1  GAATTCAACAGGTGAAACAATATAAAGTCTTGAGATTATAAGAGATACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGGTGAAACAATATAAAGTCTTGAGATTATAAGAGATACTG  50

seq1  GAAATATATTGAAAAAAAACCTAAGCATATGAACATAGAAAGGTATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATTGAAAAAAAACCTAAGCATATGAACATAGAAAGGTATTATA  100

seq1  ATATTTACTAACTTAATAATGGCTTCTTGGGTTGATACACAAATTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTAACTTAATAATGGCTTCTTGGGTTGATACACAAATTCATAT  150

seq1  ACTGAAGTGCTAACTACCAGAAAACTAAATGTGGGTGTATTTGCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGCTAACTACCAGAAAACTAAATGTGGGTGTATTTGCAAACAG  200

seq1  GCCTTTACTTAATAAATGAATTTATTTATTAAATAAATTCATATAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACTTAATAAATGAATTTATTTATTAAATAAATTCATATAAAATA  250

seq1  TTTATTAAATATTTATTTATATATACTCTAACCTCCTAAATTCCTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAATATTTATTTATATATACTCTAACCTCCTAAATTCCTAATGA  300

seq1  CCTTTCAGGTAAGGAAGGGAAGACTCAATTGTGAGTGTGCTGAAGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGGTAAGGAAGGGAAGACTCAATTGTGAGTGTGCTGAAGACTTC  350

seq1  ATGTAGCACACAAGGAACTGCTGTCTTCTATAGATCTCTGAGAAGATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCACACAAGGAACTGCTGTCTTCTATAGATCTCTGAGAAGATACT  400

seq1  AGGAGAAAGTGCTCCTCACAAACCCAAGCAGAGCTGACACTCCACTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGTGCTCCTCACAAACCCAAGCAGAGCTGACACTCCACTCAGC  450

seq1  ATTTCTGAGCATCAAGAGGGAAGTCTCTGTGCCATTTTATTATGGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGCATCAAGAGGGAAGTCTCTGTGCCATTTTATTATGGAAATG  500

seq1  GAAATGCTAATGCTCACAGTTTCTTACACTGCTTTGCTGAATTCAACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTAATGCTCACAGTTTCTTACACTGCTTTGCTGAATTCAACAAG  550

seq1  ATTCAGAGTCTCCAACAAGCAATGCTTTGTGAAGGAAATTTTCAAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTCTCCAACAAGCAATGCTTTGTGAAGGAAATTTTCAAGCTTC  600

seq1  CAGTCACTATGGACTTTCCTAAAAGGCTAATCTCCTGAGGAGTCTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTATGGACTTTCCTAAAAGGCTAATCTCCTGAGGAGTCTCACTT  650

seq1  AGTCTACAGTACTTAGGGTTGATTATATGGTAATGGATAACCTATAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAGTACTTAGGGTTGATTATATGGTAATGGATAACCTATAGGGG  700

seq1  GTTTTAGGTCTGGGATGAAGGCTTATTCTCCCTCTAAAAGCACTTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGTCTGGGATGAAGGCTTATTCTCCCTCTAAAAGCACTTCTGGT  750

seq1  TGAAGTTCTTTGTAAAGGAGTGGGAACCCATAAACAAATCTTCTCTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCTTTGTAAAGGAGTGGGAACCCATAAACAAATCTTCTCTTTCA  800

seq1  AACCAACAAGTCCCTTACTATTGCCATTGTCTAATTTTTGCATAGCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAAGTCCCTTACTATTGCCATTGTCTAATTTTTGCATAGCTCTT  850

seq1  CTTAGAGGACACTATTTCACAGCACACTTCCTGGAGTTCTGATTCTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTAGAGGACACTATTTCACAGCACACTTCCTGGAGTTCTGATTC-TGCA  899

seq1  ACGTTTCTACCTTCTCTGCTATGATGTTTACTGAGCTATAAAACCAGAAT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACGTTTCTACCTTCTCTGCTAGGATGTTTACTGAGCTATAAAACCAGAAT  949

seq1  GCCTGATGCAGAAGCAGGTGTTAACAGTAGAGGGACAAAGCCAGCTCAGT  1000
      | ||||||||| |||| ||| | ||| |||| ||||||||||  ||||  
seq2  GTCTGATGCAG-AGCA-GTGGTTACA-TAGA-GGACAAAGCCGCCTCATC  995

seq1  CACCTGGGTCTTAAGGGAGGGATTG  1025
      |||  ||||||||||||||||||||
seq2  CACTGGGGTCTTAAGGGAGGGATTG  1020

seq1: chr5_79737416_79738547
seq2: B6Ng01-022M23.g_66_1194 (reverse)

seq1  ACCCTTTAAGTGTAAGTCATCCATATTTTTCTAATCAGTTCATTCTGTTT  50
      |||| ||||||||||||||  ||| ||||| ||  |||| |||| |||||
seq2  ACCC-TTAAGTGTAAGTCACTCAT-TTTTTTTATACAGTCCATT-TGTTT  47

seq1  CCTAGGAAAAATTAAGAATTCTTACACAGCTGTAGACTAAACTCTTAC-A  99
      || ||  || | ||||| |||| || |||  |||||||||| |||||| |
seq2  CC-AGAGAACAATAAGATTTCTCAC-CAGGCGTAGACTAAATTCTTACGA  95

seq1  GAGGGATTCCAG-ATCTTTCTAGTTTGAATTTATTTGTGACTTAGTCTAA  148
      |||| ||||||| |||||| ||| ||| |||||||||  |||||||||||
seq2  GAGGAATTCCAGTATCTTTATAG-TTGGATTTATTTGGAACTTAGTCTAA  144

seq1  ATATCACCCTAAAAATA-GTGTAAAGGTTTAGTCAAACCTATACAGATTT  197
      |||||||||  |||||| ||||||||||||||||||||||||||||||||
seq2  ATATCACCCCTAAAATAGGTGTAAAGGTTTAGTCAAACCTATACAGATTT  194

seq1  GTAAGTATGTACAATCACATTAATTTACATATGTAATGGTAAGAAAGAAT  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATGTAC-ATCACATTAATTTACATATGTAATGGTAAGAAAGAAT  243

seq1  CCACAACAACATTAGACCATCCTTTTCACAGTTATGCTGTCATATTACAC  297
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCACAACAACATTAGACCATCCCTTTCACAGTTATGCTGTCATATTACAC  293

seq1  ACTGAATTGATGCATAAACTACAGAGATACAGTTATGTATAAATGC-AAA  346
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGAATTGATGCATAAACTACAGAGATACAGTTATGTATAAATGCAAAA  343

seq1  GGGATCCAAACTCTTCTTGGTTTCTCTTTTCCACTGATATTTAATCTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGATCCAAACTCTTCTTGGTTTCTCTTTTCCACTGATATTTAATCTGTA  393

seq1  AAAACTGCTTATTTTCATAGCCTGCATAATTAAGTAAAAGATAACAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCTTATTTTCATAGCCTGCATAATTAAGTAAAAGATAACAGTAA  443

seq1  AAAAAGCAAAAGTTTAATACTAACATTTCACACTTTATATACACAATACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAAAGTTTAATACTAACATTTCACACTTTATATACACAATACT  493

seq1  TATTTTTATCTGTGAGACTATTGCTCATATACTTAACAATGCATTACACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATCTGTGAGACTATTGCTCATATACTTAACAATGCATTACACT  543

seq1  CAAATCTAAAATAAGCTTATTATTCACCCATATATTTCCCACTTTTCTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTAAAATAAGCTTATTATTCACCCATATATTTCCCACTTTTCTTA  593

seq1  TTTCTCATCAATGGAAAAGCGCAGTTCCATTGGTACTTACTTTCATCCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCAATGGAAAAGCGCAGTTCCATTGGTACTTACTTTCATCCTG  643

seq1  TCCTTAGTGAATAGAAAATTAAGAAATGTACACCATAAAAATTATCATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTGAATAGAAAATTAAGAAATGTACACCATAAAAATTATCATAA  693

seq1  AGTAAAAGCCAAAAAAGTTTCTCTAGAAGTATTTCTTCATTTAACTGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGCCAAAAAAGTTTCTCTAGAAGTATTTCTTCATTTAACTGAGA  743

seq1  ATAAATGATTTGGTTACAGCAAGAGATACTAAACATTCATTCTACTGTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATTTGGTTACAGCAAGAGATACTAAACATTCATTCTACTGTAT  793

seq1  TACATGACACTTTTTATTTGGAATCTATTCACTAAAATTATTTTAAAATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACACTTTTTATTTGGAATCTATTCACTAAAATTATTTTAAAATC  843

seq1  TATGCTGTGGCCAGCCCTGCCAGATGCCTAGAAAAGGCTAAAGGCATACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTGGCCAGCCCTGCCAGATGCCTAGAAAAGGCTAAAGGCATACA  893

seq1  TGTAAGTTTTCAGGAGAAGGCCCACCATTTTGTTTGGCCTGCAATGATGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTTCAGGAGAAGGCCCACCATTTTGTTTGGCCTGCAATGATGA  943

seq1  GCTCTAAGAATGCAGGGTCCTTAGAGACTTCATCGCAGGACTGCTTCTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGAATGCAGGGTCCTTAGAGACTTCATCGCAGGACTGCTTCTTG  993

seq1  CTGCTGATATGCCTTTCCTGTCTTCCTGTCTCCTGGGCTTCAGCCCACCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATATGCCTTTCCTGTCTTCCTGTCTCCTGGGCTTCAGCCCACCC  1043

seq1  TATTAGGCAAGTTCTCTGCAGATCAACTTTTGATGAACTTTTGTGAATTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGCAAGTTCTCTGCAGATCAACTTTTGATGAACTTTTGTGAATTA  1093

seq1  ATGCTCTTTAGATGAATTACTGACTTTATAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTTAGATGAATTACTGACTTTATAGAATTC  1129