BAC Information

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BAC

Clone NameB6Ng01-023A13
Chromosome5 (Build37)
Map Location 114,974,737 - 115,114,434
singlet/doubletdoublet
Overlap geneBC057022, Trpv4
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk
Downstream geneGltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023A13.bB6Ng01-023A13.g
ACCDH855071DH855072
length940208
definitionDH855071|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A13, 5' end.DH855072|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,974,737 - 114,975,672)(115,114,227 - 115,114,434)
sequence
gaattcaggtcgctcagcttgtcagcaagcgcctgtacccactgagccat
cttgctgacccataacagctcccccacccccacctgcccagtgttgccaa
actatgtctaaactatcaaaagtccttgaagacagcattcgctgccacgg
ttccgtctgtggtgacatctaccatcacacattttcagtgcgactgcgac
aggaaagcaaagcaaagctgggaaagaagggaggagggtgagcgcagtcc
tggaacggaagtcacatgtttacgattgccagagcagagactcgaacctg
ggactcagattctgaaacccaggacccccttaacattccactttcctaac
gtggtggggaagaaacccggcagaagccctccctccacaggctccagctc
ctaatctgctgttagagaagcttaggcatattaaggggtagggccttgcc
cacattcatgcacagaactatggtaggagtagaacttagagccaggtatt
gaccatacgtgtggtatttacccgccagggctcctgtattgccctcggca
tatgatggtgtaggggtgaagacagacacagtgaggagcagaggaagcct
ggtatgaacaaagtcctgagcaaatgtgtgctgttgtcataggcacagcc
atgtcaagggccccagagcctcaagcctaagaagcaaatggcaaagcttt
tcctttctggtctctgtatggctattgatagtgtgtccagaaaatatcta
ccatagtgttctccatcagtatatgttcagccttgaaaggctaaatctgc
cttcttgtttcatcttgtccactgtacaccctgcctcttgtttaactgtt
tgccatgagcccgccgttctgttcagctctatgaaataaacgtgctgagc
tctgcggtgtgtgctttctctcacagcggccagatccaca
ctttagtgaactgggatgaagctcacttgaagccctggcttccactccca
gcaccacttaaggcaggctgggtagtaggtctgcagtcctagcatccggg
agggtcaggagttcaaggtcatcttcagcctcattgtgaattcgaggcca
gcctgagttagaaactgtaaaaaaaaaaagggggagggggttgcggggag
gggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114974737_114975672
seq2: B6Ng01-023A13.b_48_987

seq1  GAATTCAGGTCGCTCAGCTTGTCAGCAAGCGCCTGTACCCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCGCTCAGCTTGTCAGCAAGCGCCTGTACCCACTGAGCCAT  50

seq1  CTTGCTGACCCATAACAGCTCCCCCACCCCCACCTGCCCAGTGTTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGACCCATAACAGCTCCCCCACCCCCACCTGCCCAGTGTTGCCAA  100

seq1  ACTATGTCTAAACTATCAAAAGTCCTTGAAGACAGCATTCGCTGCCACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTAAACTATCAAAAGTCCTTGAAGACAGCATTCGCTGCCACGG  150

seq1  TTCCGTCTGTGGTGACATCTACCATCACACATTTTCAGTGCGACTGCGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCTGTGGTGACATCTACCATCACACATTTTCAGTGCGACTGCGAC  200

seq1  AGGAAAGCAAAGCAAAGCTGGGAAAGAAGGGAGGAGGGTGAGCGCAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAAAGCAAAGCTGGGAAAGAAGGGAGGAGGGTGAGCGCAGTCC  250

seq1  TGGAACGGAAGTCACATGTTTACGATTGCCAGAGCAGAGACTCGAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGGAAGTCACATGTTTACGATTGCCAGAGCAGAGACTCGAACCTG  300

seq1  GGACTCAGATTCTGAAACCCAGGACCCCCTTAACATTCCACTTTCCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGATTCTGAAACCCAGGACCCCCTTAACATTCCACTTTCCTAAC  350

seq1  GTGGTGGGGAAGAAACCCGGCAGAAGCCCTCCCTCCACAGGCTCCAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGGAAGAAACCCGGCAGAAGCCCTCCCTCCACAGGCTCCAGCTC  400

seq1  CTAATCTGCTGTTAGAGAAGCTTAGGCATATTAAGGGGTAGGGCCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGCTGTTAGAGAAGCTTAGGCATATTAAGGGGTAGGGCCTTGCC  450

seq1  CACATTCATGCACAGAACTATGGTAGGAGTAGAACTTAGAGCCAGGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATGCACAGAACTATGGTAGGAGTAGAACTTAGAGCCAGGTATT  500

seq1  GACCATACGTGTGGTATTTACCCGCCAGGGCTCCTGTATTGCCCTCGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACGTGTGGTATTTACCCGCCAGGGCTCCTGTATTGCCCTCGGCA  550

seq1  TATGATGGTGTAGGGGTGAAGACAGACACAGTGAGGAGCAGAGGAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGTGTAGGGGTGAAGACAGACACAGTGAGGAGCAGAGGAAGCCT  600

seq1  GGTATGAACAAAGTCCTGAGCAAATGTGTGCTGTTGTCATAGGCACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAACAAAGTCCTGAGCAAATGTGTGCTGTTGTCATAGGCACAGCC  650

seq1  ATGTCAAGGGCCCCAGAGCCTCAGGCCTAAGAAGCAAATGGCAAAGC-TT  699
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  ATGTCAAGGGCCCCAGAGCCTCAAGCCTAAGAAGCAAATGGCAAAGCTTT  700

seq1  TCCTTTCTGGTCTCTGTATGGCTATTGATAGTGTGTCCAGAAAATATCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGGTCTCTGTATGGCTATTGATAGTGTGTCCAGAAAATATCTA  750

seq1  CCATAGTGTTCTCCATCAGTATATGTTCAGCCT--GAAGGCTAAATCTGC  797
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CCATAGTGTTCTCCATCAGTATATGTTCAGCCTTGAAAGGCTAAATCTGC  800

seq1  CTTCTTG-TTCATC-TGTCCACTGTACACCCTGCCTCTTGTTTAACTGTT  845
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTCATCTTGTCCACTGTACACCCTGCCTCTTGTTTAACTGTT  850

seq1  TGCCATGAGCCCGCCGTTCTGTTCAGCTCTATGAAATAAACGTGCTGAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGAGCCCGCCGTTCTGTTCAGCTCTATGAAATAAACGTGCTGAGC  900

seq1  TCTGCGGTGTTGTGCTTTCTCCATCAGCGGCCAGATCCACA  936
      ||||||||| |||||||||||   |||||||||||||||||
seq2  TCTGCGGTG-TGTGCTTTCTCTCACAGCGGCCAGATCCACA  940

seq1: chr5_115114227_115114434
seq2: B6Ng01-023A13.g_75_282 (reverse)

seq1  TCTCCCCCCTCCCCGCAACCCCCTCCCCCTTTTTTTTTTTACAGTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCTCCCCGCAACCCCCTCCCCCTTTTTTTTTTTACAGTTTCTA  50

seq1  ACTCAGGCTGGCCTCGAATTCACAATGAGGCTGAAGATGACCTTGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCTGGCCTCGAATTCACAATGAGGCTGAAGATGACCTTGAACTC  100

seq1  CTGACCCTCCCGGATGCTAGGACTGCAGACCTACTACCCAGCCTGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTCCCGGATGCTAGGACTGCAGACCTACTACCCAGCCTGCCTTA  150

seq1  AGTGGTGCTGGGAGTGGAAGCCAGGGCTTCAAGTGAGCTTCATCCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCTGGGAGTGGAAGCCAGGGCTTCAAGTGAGCTTCATCCCAGTT  200

seq1  CACTAAAG  208
      ||||||||
seq2  CACTAAAG  208