BAC Information

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BAC

Clone NameB6Ng01-023B19
Chromosome5 (Build37)
Map Location 47,288,707 - 47,289,759
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023B19.b
ACCDH855127
length1,046
definitionDH855127|Mus musculus domesticus DNA, BAC clone: B6Ng01-023B19, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgctcgggtgtggaacatgtgttgaatttagtggtggatgac
ccgccgaagccacaggttgaagagtttccaaggctcttgtgacctaaatt
gccctggaacgcaaccgacaaattgttgcccaaaatatatgacatatttg
cttttttgaattaggagttggattcccacaggaaacacgagatgatgcag
cgcccacaggggattgggatctccccaagatacaccaaggggctgctacg
tcacttttcccaagcttgccccgggataagagaattcactgaagtctgcc
tgctcattatcatcactataccctgtaaaatctgagatattaatgataaa
accttcctttcccaaaaatgaaaggttttgccttccatgcctggggggta
agtagctagggatgaaagaaaaaacaaactagtcccccaggcacaactga
gtctgtggataggagacatttgtaagatttgaagattttgttttcccttt
taaggcagtcttctagggtggaaggatatttcacttaatttgtttagtct
gctgaaaacaaatgaagcaaaacatataaaacacttattattcttagtat
ttcgtgcatatcatgtggacaaatgttgggattatgcttattttgaagaa
taattttgaacttctatatgatattgtcttctggtcacatgtgtaataat
tgatgtttcttagaagtaattacatttcagtctccttgtacaattagaga
aaagagaaaagaaagcctgaacctgctctatacagactcatgctgggtat
gtgagggacattaacactttggaaaacatctcttcacactttatatgtct
gtccctaagaaaaggaacttcgaagatcaaacgtttagccctccctttcc
tttctactaccttgctgaaaggtgttgcagaaaatatttatcaagcgttt
gctgcatcacgtctcagtgtcacataaatcatgccgtcctcccctcctct
ggggggtctgcagtcaaagagatagtgaccttactaaagaagcatt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47288707_47289759
seq2: B6Ng01-023B19.b_38_1083 (reverse)

seq1  AATGCTTCTTTATATTGATGACTATCTCTGTGGACTGCAGA--CCCCAGA  48
      ||||||||||||    | | ||||||||| | |||||||||  |||||||
seq2  AATGCTTCTTTAGTAAGGTCACTATCTCT-TTGACTGCAGACCCCCCAGA  49

seq1  AGAGTGGGGAGAGGGCATTATTTATCTGGACACTGAGACCTGTTGCAGCA  98
       ||| |||  || ||||| |||||| | ||||||||||| || |||||||
seq2  GGAG-GGGAGGACGGCATGATTTATGT-GACACTGAGACGTGATGCAGCA  97

seq1  AACGCTTGATAAATATTCTCTGCAAAACTTTTAAGCAAGGTAGTAGAAAG  148
      ||||||||||||||||| ||||||| || ||| |||||||||||||||||
seq2  AACGCTTGATAAATATTTTCTGCAACACCTTTCAGCAAGGTAGTAGAAAG  147

seq1  GAAAGTGGAGTGGCTAAAACGTTTGATCTTCGAAGTTCCTTTTTCTTAGG  198
      ||||| |||| |||| ||||||||||||||||||||||| ||||||||||
seq2  GAAAG-GGAG-GGCT-AAACGTTTGATCTTCGAAGTTCC-TTTTCTTAGG  193

seq1  GACAGACATATAAAGTGTGAAGAGATGTTTTCCAAAGTGTTAATGACCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACAGACATATAAAGTGTGAAGAGATGTTTTCCAAAGTGTTAATGTCCCT  243

seq1  CACAAACCCAGCATGAGTCTGTAAAGAGCAGGTTCAGGCTTTCTTTTCTC  298
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACATACCCAGCATGAGTCTGTATAGAGCAGGTTCAGGCTTTCTTTTCTC  293

seq1  TTTTCACTAATTGTACAAGGAGAATGAAATGTAATTACTTCTATGAAACC  348
      ||||| ||||||||||||||||| ||||||||||||||||||| ||||| 
seq2  TTTTCTCTAATTGTACAAGGAGACTGAAATGTAATTACTTCTAAGAAACA  343

seq1  TAAATTATTACACATGTGACCAGAAGACAATATCATATAGAAGTTCAAAA  398
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATTACACATGTGACCAGAAGACAATATCATATAGAAGTTCAAAA  393

seq1  TTATTCTTTAAAATAAGCATAATCCCAACATTTGTCCACATGATATGCAC  448
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCAAAATAAGCATAATCCCAACATTTGTCCACATGATATGCAC  443

seq1  GAAATACTAAGAATAATAAGTGTTTTATATGTTTTGCTTCATTTGTTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTAAGAATAATAAGTGTTTTATATGTTTTGCTTCATTTGTTTTC  493

seq1  AGCAGACTAAACAAATTAAGTGAAATATCCTTCCATGTTAGAAGACTGCC  548
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AGCAGACTAAACAAATTAAGTGAAATATCCTTCCACCCTAGAAGACTGCC  543

seq1  TTAAAAGGTAAAATAAAATCTTTAAATCTTACAAATGTCTCCTATCCACA  598
      |||||||| |||| |||||||| |||||||||||||||||||||||||||
seq2  TTAAAAGGGAAAACAAAATCTTCAAATCTTACAAATGTCTCCTATCCACA  593

seq1  GACTCAGTTTTGCCTTGTTGACTTGTTTGTTTTTTCTTTCATCCCTAGCA  648
      ||||||||| ||||| |  |||| ||||||||||||||||||||||||| 
seq2  GACTCAGTTGTGCCTGGGGGACTAGTTTGTTTTTTCTTTCATCCCTAGCT  643

seq1  ACTTACCACCCAGGCATGGAAGGCAAAACCTTTCATTTTTATGGAAAGGA  698
      ||||||| ||||||||||||||||||||||||||||||||  ||||||||
seq2  ACTTACCCCCCAGGCATGGAAGGCAAAACCTTTCATTTTT-GGGAAAGGA  692

seq1  AGGTTTTATCATTAATATCTCAGATTTTACAGGGTATAGTGATGATAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATCATTAATATCTCAGATTTTACAGGGTATAGTGATGATAATG  742

seq1  AGCAGGCAGACTTCAGTGAATTCTCTTATCATGATTTAAACTTTGTAAAA  798
      ||||||||||||||||||||||||||||||  |    || ||| | ||||
seq2  AGCAGGCAGACTTCAGTGAATTCTCTTATCCCGGGGCAAGCTTGGGAAAA  792

seq1  CTGAAGTAGCAGCCCCTTCTTGTATCCTGGGGAGATCCCAATGCCCTGTT  848
       ||| |||||||||||||  |||||| ||||||||||||||| |||||| 
seq2  GTGACGTAGCAGCCCCTTGGTGTATCTTGGGGAGATCCCAATCCCCTGTG  842

seq1  GTTGGTGCATCATTTCCTGTTTACTGTGGGAATCCAACTCCTAATTCAAA  898
      |  | |||||||| || ||||| |||||||||||||||||||||||||||
seq2  GGCGCTGCATCATCTCGTGTTTCCTGTGGGAATCCAACTCCTAATTCAAA  892

seq1  AAAGCAAATATGTCATATATTTTGTGCAACAATTTGTCGGTTGCTTTCTA  948
      |||||||||||||||||||||||| ||||||||||||||||||| ||| |
seq2  AAAGCAAATATGTCATATATTTTGGGCAACAATTTGTCGGTTGCGTTCCA  942

seq1  GTACAATTTAGGTCACAAGAGCCTTGGAAACTCTTCAACCTGTGGCTTCT  998
      |  |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGCAATTTAGGTCACAAGAGCCTTGGAAACTCTTCAACCTGTGGCTTCG  992

seq1  GTGGGTCATCCACCACTAAATTCAATAATGTGTTCCACACCCTTGCAAAG  1048
      | |||||||||||||||||||||||  |  ||||||||||||  ||||||
seq2  GCGGGTCATCCACCACTAAATTCAA-CACATGTTCCACACCCGAGCAAAG  1041

seq1  AATTC  1053
      |||||
seq2  AATTC  1046