BAC Information

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BAC

Clone NameB6Ng01-023D14
Chromosome5 (Build37)
Map Location 18,086,500 - 18,087,696
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023D14.bB6Ng01-023D14.g
ACCDH855201DH855202
length1,1261,188
definitionDH855201|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D14, 5' end.DH855202|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttatgatgataatttattttttcttttttttccttcttt
ttccttttctttataatccagccattgccccacccccaggtcctcatcct
attcctcctcccctgccagagaggatgctcccccaccaccgtacctccat
cctccctggggcctcaaatctttcaaggattaggtacatcttctcccact
gagggcagactaggaaatcctctgttatttgtgtgacagggcctcagacc
atcttgtgtatgctgtctggttggtggctcagtgtctggcagctcccatg
ggttcaggttaattgagactgtggaaatcctatggggttgccctcatctt
ctgcttcttccatccttcccctaattcgaccataggggatggttggctgt
aagtatctgtgtctgtttcattcagctgctatttgggcctctcaaaggac
aaccatgccaggctcttttctataagtacatcatagcatcagtaattgtc
tcagaccttggtgtctccccatgaggtggatcctcagttgggcaggtcac
tggaatgcctttttctcagtttcgattccacttttgtccctgtaggatag
aacaaaacagttctgggtcagaaatttttgactgtgggttttaacaccat
ccctccttttgaggtcctgcctatctactggaggtggattcttagagttt
cctctccctattgtagagcatttcatctaggtcacttccattgagtcttg
agactctctcccaggtctctggtactttctatagggtctccgcacctccc
accttctgaggatgcatatttccattcattctgctagtcctctggacttc
tctcctgctctccccgatctgtttctcttttcctcaacctcctcccctgt
cccacacaaatcccttccctctctgtgtctcctgtattatttcatcttca
tactaaatgggattgaagcatcctcactggccttctgctagtaaaatctt
aaattctgtggatctaccctaggtttcataactttggctatatccactta
taggagactaccatttatgccctttggatctagttaccctgccaagatga
aattttttagtccatctttgcccgcg
gaattcatcttggtggtcagctagcacacagtttaatggatactgtttga
aaaaagtctctaatttgtgaatccagacaacttgggttcatagcaacaat
taaggcaatacatgaggctccgcgggtctcacttctaataatgcattaaa
acttgtaaatataaaggcaaatataatctgtaactttaatgtatcctcat
tgaattcatgtagagtattgacagtgacagaattctcaagagaaaataca
ttttcattatgaactaagatgagaacagcaatttaatttacattccaaac
agttttcagatgaaaggccatgtaggtcattgttaacttatactgtgaag
gcttacgggtggcaggtttcaattaaagccttttaatgattcttccttgc
aagctggaaacttttgaattgtacctgagaaatgtatgaaaccagagaaa
gaaaaaaagataattatcttccactcggatcactcggtatttgtttctct
ctctcccccctcttctacctctctttctttttgtatgtaggtgtcggtgt
tcttgtcagtagaagccagaatcaatggattgcttcaatcactttttgcc
ctattttttgaggcaaagtgtatcagttcatctgcagctttctgattcag
ctagacttcctagccaattgattcccaggaattctccagattctacactc
tagctctggggtagcagatgcttggtgctccgcctgatttacataggtac
tcaggtcctcatatgtacatagcaaatcctcaactcactgagtcatactc
tcagcctgactccatagtacctttacatactcaaaataaacggactttgc
taaaataaaaataataaatattaataagtgttgtggatagtcttggtgct
gtttgtattttgatgctaattctgctttcccaggaagggtgtgggtgagg
atgaatcatgtatgcaggtgacttcttgtgaccttcttcctcaccttaac
tttgtaacgtaagggctagagctggggattgggcaggacctccaaggcag
agtattaaaacatcctgaagtcacttaaagactaagatgctcactttact
agtgactccaaacacctttaagagaacaactatacatccatttgctttct
gggatattcccttcaatcagctataatctcggctaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18086500_18087696
seq2: B6Ng01-023D14.g_68_1255

seq1  GAATTCATCTTGGTGGTCAGCTAGCACACAGTTTAATGGATACTGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGGTGGTCAGCTAGCACACAGTTTAATGGATACTGTTTGA  50

seq1  AAAAAGTCTCTAATTTGTGAATCCAGACAACTTGGGTTCATAGCAACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCTAATTTGTGAATCCAGACAACTTGGGTTCATAGCAACAAT  100

seq1  TAAGGCAATACATGAGGCTCCGCGGGTCTCACTTCTAATAATGCATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAATACATGAGGCTCCGCGGGTCTCACTTCTAATAATGCATTAAA  150

seq1  ACTTGTAAATATAAAGGCAAATATAATCTGTAACTTTAATGTATCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAAATATAAAGGCAAATATAATCTGTAACTTTAATGTATCCTCAT  200

seq1  TGAATTCATGTAGAGTATTGACAGTGACAGAATTCTCAAGAGAAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATGTAGAGTATTGACAGTGACAGAATTCTCAAGAGAAAATACA  250

seq1  TTTTCATTATGAACTAAGATGAGAACAGCAATTTAATTTACATTCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTATGAACTAAGATGAGAACAGCAATTTAATTTACATTCCAAAC  300

seq1  AGTTTTCAGATGAAAGGCCATGTAGGTCATTGTTAACTTATACTGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGATGAAAGGCCATGTAGGTCATTGTTAACTTATACTGTGAAG  350

seq1  GCTTACGGGTGGCAGGTTTCAATTAAAGCCTTTTAATGATTCTTCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGGGTGGCAGGTTTCAATTAAAGCCTTTTAATGATTCTTCCTTGC  400

seq1  AAGCTGGAAACTTTTGAATTGTACCTGAGAAATGTATGAAACCAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAACTTTTGAATTGTACCTGAGAAATGTATGAAACCAGAGAAA  450

seq1  GAAAAAAAGATAATTATCTTCCACTCGGATCACTCGGTATTTGTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGATAATTATCTTCCACTCGGATCACTCGGTATTTGTTTCTCT  500

seq1  CTCTCCCCCCTCTTCTACCTCTCTTTCTTTTTGTATGTAGGTGTCGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCCTCTTCTACCTCTCTTTCTTTTTGTATGTAGGTGTCGGTGT  550

seq1  TCTTGTCAGTAGAAGCCAGAATCAATGGATTGCTTCAATCACTTTTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGTAGAAGCCAGAATCAATGGATTGCTTCAATCACTTTTTGCC  600

seq1  CTATTTTTTGAGGCAAAGTGTATCAGTTCATCTGCAGCTTTCTGATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTGAGGCAAAGTGTATCAGTTCATCTGCAGCTTTCTGATTCAG  650

seq1  CTAGACTTCCTAGCCAATTGATTCCCAGGAATTCTCCAGATTCTACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTCCTAGCCAATTGATTCCCAGGAATTCTCCAGATTCTACACTC  700

seq1  TAGCTCTGGGGTAGCAGATGCTTGGTGCTCCGCCTGATTTACATAGGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGGGGTAGCAGATGCTTGGTGCTCCGCCTGATTTACATAGGTAC  750

seq1  TCAGGTCCTCATATGTACATAGCAAATCCTCAACTCACTGAGTCATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTCATATGTACATAGCAAATCCTCAACTCACTGAGTCATACTC  800

seq1  TCAGCCTGACTCCATAGTACCTTTACATACTCAAAATAAACGGACTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGACTCCATAGTACCTTTACATACTCAAAATAAACGGACTTTGC  850

seq1  TAAAATAAAAATAATAAATATTAATAAGTGTTGTGGATAGTCTTGGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAATAATAAATATTAATAAGTGTTGTGGATAGTCTTGGTGCT  900

seq1  GTTTGTATTTTGATGCTAATTCTGCTTTCCCAGGAAGGGTTGTGGGTGAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GTTTGTATTTTGATGCTAATTCTGCTTTCCCAGGAAGGG-TGTGGGTGA-  948

seq1  GGATGAATCATGTATGCAGGTGACTTCTTGTGAACCTTC-TCCCCACCTT  999
      |||||||||||||||||||||||||||||||| |||||| ||| ||||||
seq2  GGATGAATCATGTATGCAGGTGACTTCTTGTG-ACCTTCTTCCTCACCTT  997

seq1  AAC-TTGTAACGTAAGGGCTAGAGCTGGGGATTGGGCAGGGACCTCAAAG  1048
      ||| |||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AACTTTGTAACGTAAGGGCTAGAGCTGGGGATTGGGCA-GGACCTCCAAG  1046

seq1  CCAGAGTTATTAATACATCCTGAGGTCACTT-AAGACTTAAGACTGCTCA  1097
       ||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||
seq2  GCAGAG-TATTAAAACATCCTGAAGTCACTTAAAGAC-TAAGA-TGCTCA  1093

seq1  -TCTACTATGTACTCAAACCACCTTTAAGAGAACAACATAACAATCCATT  1146
       | |||||   |||| || |||||||||||||||||| ||   ||||| |
seq2  CTTTACTAGTGACTCCAAACACCTTTAAGAGAACAAC-TATACATCCA-T  1141

seq1  TTGCTTTTCTTGGATTTTCCATTCAATCAGCCTTTATAATCTCGGCTAAT  1196
      |||| ||||| |||| |||| ||||||||||   ||||||||||||||||
seq2  TTGC-TTTCTGGGATATTCCCTTCAATCAGC---TATAATCTCGGCTAAT  1187

seq1  G  1197
      |
seq2  G  1188