BAC Information

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BAC

Clone NameB6Ng01-023J06
Chromosome5 (Build37)
Map Location 47,833,929 - 47,936,997
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023J06.bB6Ng01-023J06.g
ACCDH855460DH855461
length1,107832
definitionDH855460|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J06, 5' end.DH855461|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,833,929 - 47,835,056)(47,936,166 - 47,936,997)
sequence
gaattcaaagttattccctcttactttctctttcagcaaggttagtgtat
ctggatttctagttaccaactagtttggctagcaccatttattaaagata
ttgtgttttttctgtatagattgctggcttctttaagaaaaatttgatgt
ccttaggtgtatggatttatgtctaggtcttcaacatgattttgttgata
gatttgtctgttttttgtgtgtgtgagtgccaattccatgctggttttat
aactcttgctctgtagtacaattttaaataggggatagtgagacctggaa
ctctatttttacttaggaatatcttagctgtcttaggttgtttgtaatca
cattatcttaatctttaaagataaaattggacttcctcaattgtagcaaa
gataaatatatatacaaaattgatcattctccataacaattgatatgtat
ttctttctgacaatattaagggaaaagaattctaaaacactcttcaaaat
gttagcagggacttacttgataatttacttatgatataagtcttcccgta
cctttctcacctctcctctattcttccttatcttcttccacttattcctt
tccctttttctttattactaaagatctttgctgcacactctttttctgtc
tctttctgtttctctctctgccccccatctttctgtatcccttcttgtaa
ctttactttgtgcaatgtactgttgtcagagagatttatctgtgaaacta
gaaaaaagaacactaacatcagtaaggttttatacaatcctattttatat
ataatacaataccaatatatcaatgaaacaacagcatgatgcagttttct
catgcacctgaaaaattcaatcaattcacttcacatatgatagttttgtc
tagaaagtttcactacaatgagcaagtcagatgagaagagatgtaaaaaa
aaaaaagattgtctcagtgtgctgataaagttatggcgatataaggaata
aatgggcagtattcttgcttatgtgcttatccacagatctctaaatctga
gaggagttctagtactccgtggtgaataaaataattgacaatggtgagtt
tctaagg
gaattcttcaccgtattaaagaaaacatgtcaaatgtgttcaaaaccatg
ggccgtagaggaacgaaaatgttatagtaaaatcatgccagaaagagctc
atccaatcagtttaggcaggagggccatgccaggactggaagattaatgt
ggaaaacctgatccatagcctaagcaatggagtggaacctgagagtaatg
tgtgattacagtgtcccaagttaaagagtttgcacttactattgtcaata
gaggatcaagttagcaatgaagagatgagaatattcctctcacaaaaaga
aataaaaaggcagggttttatcatccaagtgggctaggctcagaaataaa
tgggatgataactaatttacagacagcttgatttgtaatggaaaagggca
catttagagtataaaaacctacatctaaatcccaaggcagttaagtaaaa
gttatggaacttgattattccattttatgtctttaaaaactccaattttc
ttacttctacaattggcatgtttttttcttaacttgacacatagatctca
agatttatagactacatatgtccagagcattggcaattgtataagttctc
aaatataccagctcctcagagttgtttcttcattactttccaaaagatag
gcactgtcagaggcatatggagataggaatactagtttgaggtgttgcaa
gacattatgtttaaagatatgcatatttctatatttaaaaagaacattat
ttgaccacacaatgtgattaagatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47833929_47835056
seq2: B6Ng01-023J06.b_44_1150

seq1  GAATTCAAAGTTATTCCCTCTTACTTTCTCTTTCAGCAAGGTTAGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTATTCCCTCTTACTTTCTCTTTCAGCAAGGTTAGTGTAT  50

seq1  CTGGATTTCTAGTTACCAACTAGTTTGGCTAGCACCATTTATTAAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTCTAGTTACCAACTAGTTTGGCTAGCACCATTTATTAAAGATA  100

seq1  TTGTGTTTTTTCTGTATAGATTGCTGGCTTCTTTAAGAAAAATTTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTTTCTGTATAGATTGCTGGCTTCTTTAAGAAAAATTTGATGT  150

seq1  CCTTAGGTGTATGGATTTATGTCTAGGTCTTCAACATGATTTTGTTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTGTATGGATTTATGTCTAGGTCTTCAACATGATTTTGTTGATA  200

seq1  GATTTGTCTGTTTTTTGTGTGTGTGAGTGCCAATTCCATGCTGGTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCTGTTTTTTGTGTGTGTGAGTGCCAATTCCATGCTGGTTTTAT  250

seq1  AACTCTTGCTCTGTAGTACAATTTTAAATAGGGGATAGTGAGACCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGCTCTGTAGTACAATTTTAAATAGGGGATAGTGAGACCTGGAA  300

seq1  CTCTATTTTTACTTAGGAATATCTTAGCTGTCTTAGGTTGTTTGTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTACTTAGGAATATCTTAGCTGTCTTAGGTTGTTTGTAATCA  350

seq1  CATTATCTTAATCTTTAAAGATAAAATTGGACTTCCTCAATTGTAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTTAATCTTTAAAGATAAAATTGGACTTCCTCAATTGTAGCAAA  400

seq1  GATAAATATATATACAAAATTGATCATTCTCCATAACAATTGATATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATATATATACAAAATTGATCATTCTCCATAACAATTGATATGTAT  450

seq1  TTCTTTCTGACAATATTAAGGGAAAAGAATTCTAAAACACTCTTCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGACAATATTAAGGGAAAAGAATTCTAAAACACTCTTCAAAAT  500

seq1  GTTAGCAGGGACTTACTTGATAATTTACTTATGATATAAGTCTTCCCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGGGACTTACTTGATAATTTACTTATGATATAAGTCTTCCCGTA  550

seq1  CCTTTCTCACCTCTCCTCTATTCTTCCTTATCTTCTTCCACTTATTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCACCTCTCCTCTATTCTTCCTTATCTTCTTCCACTTATTCCTT  600

seq1  TCCCTTTTTCTTTATTACTAAAGATCTTTGCTGCACACTCTTTTTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTCTTTATTACTAAAGATCTTTGCTGCACACTCTTTTTCTGTC  650

seq1  TCTTTCTGTTTCTCTCTCTGCCCCCCATCTTTCTGTATCCCTTCTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTTTCTCTCTCTGCCCCCCATCTTTCTGTATCCCTTCTTGTAA  700

seq1  CTTTACTTTGTGCAATGTACTGTTGTCAGAGAGATTTATCTGTGAAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTGTGCAATGTACTGTTGTCAGAGAGATTTATCTGTGAAACTA  750

seq1  GAAAAAAGAACACTAACATCAGTAAGGTTTTATACAATCCTATTTTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAACACTAACATCAGTAAGGTTTTATACAATCCTATTTTATAT  800

seq1  ATAATACAATACCAATATATCAATGAAACAACAGCATGATGCAGTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAATACCAATATATCAATGAAACAACAGCATGATGCAGTTTTCT  850

seq1  CATGCACCTGAAAAATTCAATCAATTCACTTCACATATGATAGTTTTGTT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGCACCTGAAAAATTCAATCAATTCACTTCACATATGATAGTTTTG-T  899

seq1  CTAGAAAGTTTTCACTAACAATGAGCAAGTCAGGATGAGAAAGAGAATGT  950
      |||||||| ||||||| ||||||||||||||| |||||| ||||| ||| 
seq2  CTAGAAAG-TTTCACT-ACAATGAGCAAGTCA-GATGAG-AAGAG-ATG-  943

seq1  TAAAAAAAAAAAAGATGGTCTCAGTGTGCTGATAAAAGTTATGGCGATAA  1000
      |||||||||||||||| |||||||||||||||| |||||||||||||| |
seq2  TAAAAAAAAAAAAGATTGTCTCAGTGTGCTGAT-AAAGTTATGGCGAT-A  991

seq1  TAAGGAAATAAAATGGGCAGTATTCCTGC-TATGTGCTTTATCCACAGAT  1049
      |||||||   ||||||||||||||| ||| ||||||| ||||||||||||
seq2  TAAGGAA--TAAATGGGCAGTATTCTTGCTTATGTGC-TTATCCACAGAT  1038

seq1  CTCTAAATCATGAGAGAGTTTCTAGTACTCACGTTGATGGAATCTACAAT  1099
      ||||||||| ||||||   ||||||||||| ||| |   ||||    || 
seq2  CTCTAAATC-TGAGAGGAGTTCTAGTACTC-CGTGG--TGAAT----AAA  1080

seq1  ATATTTGACAATGTTGAGTTTTCCTAAGG  1128
      ||| ||||||||| |||||||  ||||||
seq2  ATAATTGACAATGGTGAGTTT--CTAAGG  1107

seq1: chr5_47936166_47936997
seq2: B6Ng01-023J06.g_67_898 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATATATCTTAATCACATTGTGTGGTCAAATAATGTTCTTTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATCTTAATCACATTGTGTGGTCAAATAATGTTCTTTTTAAAT  100

seq1  ATAGAAATATGCATATCTTTAAACATAATGTCTTGCAACACCTCAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATATGCATATCTTTAAACATAATGTCTTGCAACACCTCAAACTA  150

seq1  GTATTCCTATCTCCATATGCCTCTGACAGTGCCTATCTTTTGGAAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTATCTCCATATGCCTCTGACAGTGCCTATCTTTTGGAAAGTAA  200

seq1  TGAAGAAACAACTCTGAGGAGCTGGTATATTTGAGAACTTATACAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACAACTCTGAGGAGCTGGTATATTTGAGAACTTATACAATTGC  250

seq1  CAATGCTCTGGACATATGTAGTCTATAAATCTTGAGATCTATGTGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCTGGACATATGTAGTCTATAAATCTTGAGATCTATGTGTCAAG  300

seq1  TTAAGAAAAAAACATGCCAATTGTAGAAGTAAGAAAATTGGAGTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAAAACATGCCAATTGTAGAAGTAAGAAAATTGGAGTTTTTAA  350

seq1  AGACATAAAATGGAATAATCAAGTTCCATAACTTTTACTTAACTGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAATGGAATAATCAAGTTCCATAACTTTTACTTAACTGCCTTG  400

seq1  GGATTTAGATGTAGGTTTTTATACTCTAAATGTGCCCTTTTCCATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGATGTAGGTTTTTATACTCTAAATGTGCCCTTTTCCATTACAA  450

seq1  ATCAAGCTGTCTGTAAATTAGTTATCATCCCATTTATTTCTGAGCCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTGTCTGTAAATTAGTTATCATCCCATTTATTTCTGAGCCTAGC  500

seq1  CCACTTGGATGATAAAACCCTGCCTTTTTATTTCTTTTTGTGAGAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGATGATAAAACCCTGCCTTTTTATTTCTTTTTGTGAGAGGAAT  550

seq1  ATTCTCATCTCTTCATTGCTAACTTGATCCTCTATTGACAATAGTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATCTCTTCATTGCTAACTTGATCCTCTATTGACAATAGTAAGTG  600

seq1  CAAACTCTTTAACTTGGGACACTGTAATCACACATTACTCTCAGGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTTAACTTGGGACACTGTAATCACACATTACTCTCAGGTTCCA  650

seq1  CTCCATTGCTTAGGCTATGGATCAGGTTTTCCACATTAATCTTCCAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCTTAGGCTATGGATCAGGTTTTCCACATTAATCTTCCAGTCC  700

seq1  TGGCATGGCCCTCCTGCCTAAACTGATTGGATGAGCTCTTTCTGGCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGCCCTCCTGCCTAAACTGATTGGATGAGCTCTTTCTGGCATGA  750

seq1  TTTTACTATAACATTTTCGTTCCTCTACGGCCCATGGTTTTGAACACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATAACATTTTCGTTCCTCTACGGCCCATGGTTTTGAACACATT  800

seq1  TGACATGTTTTCTTTAATACGGTGAAGAATTC  832
      ||||||||||||||||||||||||||||||||
seq2  TGACATGTTTTCTTTAATACGGTGAAGAATTC  832