BAC Information

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BAC

Clone NameB6Ng01-023K09
Chromosome5 (Build37)
Map Location 59,979,233 - 59,980,159
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023K09.bB6Ng01-023K09.g
ACCDH855510DH855511
length9211,013
definitionDH855510|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K09, 5' end.DH855511|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaaaactagaacaggggatgccactgactcatttgcctactt
ttggatattttccccctagttaagatgctttgtctggcctcagtggaaga
gggttcccttattcctgctgcaacttaattggtatccattggagacccta
cagttctattagaataaagggaagaggaaactggagaagggaaagtgaga
gtgaaaattagaggcaaggagttaggcagctgtgattaagatgtaaattg
aataaataaattaatgaaaaagaaggtattttataatgcacttaaagcat
agaaaatctcacgcatttagacattttatgatagaaaattattaataaaa
ttatgttttactaatattgcattatttatattttattgaagtctagcatg
ttcaagtttaattattaaaatagatgtagaagttagagaatagatgaaca
tggtaagataaaaacattaacaacccaacagagaagtaacactgaatatc
tttttatcatatacaatattgaatatatcacagcttttataataccttat
taaaatagtaatttagtatttagaataaattaatactcttacatagtatt
tcatataagttaggctaacatttaacttgctcagtataaggtaatgacca
tttgcaatggacctccaaatgatgaaatttatgcatttagtataaatgat
tcgatttaaaactatattgcaggcagttcaaaatttgcttaaacttctct
gttcaaaataattgtgtttattcctgttgtttctatagcaaaaaaaaaaa
ttactgatatgagtgtgtcatggcctctagtgaattttctcactgttatt
tttttttaatatgtgccctgtgtcgtctttagacaccttgcaaaacagaa
agttttctcctaatgcttagc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatttcactccagtcagaatggctaagttcaaaaattcaggtgacagc
agatgatggcgaggatatggagaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctgcaaatcagtccagcggttcctca
gaagattggacatagtactaccggaggatccgcaatacctctcctgggca
tatatccagaagatgccccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgt
agtactactcagctattaaaaaaatgaatttatgaaattcctagacaaat
ggatggatctggagggcatcaccctgagtggggtaacccaatcacaaagg
aactcgcacagtatgtactcactgataagtggatattagcccagaaactt
agaatacccaagatataagatacaatttgctaaatgcatgaaactcaaga
agaaagaagaccaaagtatggacacctttccccttcctggaaatgggaac
aaaacacccatggaaggagttacagagacaaaatttggagctgtgacgaa
aggatagaccatctagtgattgccatatgcagggatccatcccataatta
gcttccaaacgctgaccccatttcatacactagcaagattttgctgaaag
gatccagatatagctgtttcttgtgagactatgcaggggcctagcaaaca
cagaagttgaatgctctcagtcagcttattggatgggtcacacggcctcc
atggaaggagctagagaaattatccaatgagcttaagggaactgcaacct
cttatggtgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59979233_59980159
seq2: B6Ng01-023K09.b_44_964

seq1  GAATTCTTCAAAACTAGAACAGGGGATGCCACTGACTCATTTGCCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAACTAGAACAGGGGATGCCACTGACTCATTTGCCTACTT  50

seq1  TTGGATATTTTCCCCCTAGTTAAGATGCTTTGTCTGGCCTCAGTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTTTCCCCCTAGTTAAGATGCTTTGTCTGGCCTCAGTGGAAGA  100

seq1  GGGTTCCCTTATTCCTGCTGCAACTTAATTGGTATCCATTGGAGACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCCTTATTCCTGCTGCAACTTAATTGGTATCCATTGGAGACCCTA  150

seq1  CAGTTCTATTAGAATAAAGGGAAGAGGAAACTGGAGAAGGGAAAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTATTAGAATAAAGGGAAGAGGAAACTGGAGAAGGGAAAGTGAGA  200

seq1  GTGAAAATTAGAGGCAAGGAGTTAGGCAGCTGTGATTAAGATGTAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATTAGAGGCAAGGAGTTAGGCAGCTGTGATTAAGATGTAAATTG  250

seq1  AATAAATAAATTAATGAAAAAGAAGGTATTTTATAATGCACTTAAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATTAATGAAAAAGAAGGTATTTTATAATGCACTTAAAGCAT  300

seq1  AGAAAATCTCACGCATTTAGACATTTTATGATAGAAAATTATTAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTCACGCATTTAGACATTTTATGATAGAAAATTATTAATAAAA  350

seq1  TTATGTTTTACTAATATTGCATTATTTATATTTTATTGAAGTCTAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTACTAATATTGCATTATTTATATTTTATTGAAGTCTAGCATG  400

seq1  TTCAAGTTTAATTATTAAAATAGATGTAGAAGTTAGAGAATAGATGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTAATTATTAAAATAGATGTAGAAGTTAGAGAATAGATGAACA  450

seq1  TGGTAAGATAAAAACATTAACAACCCAACAGAGAAGTAACACTGAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGATAAAAACATTAACAACCCAACAGAGAAGTAACACTGAATATC  500

seq1  TTTTTATCATATACAATATTGAATATATCACAGCTTTTATAATACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATATACAATATTGAATATATCACAGCTTTTATAATACCTTAT  550

seq1  TAAAATAGTAATTTAGTATTTAGAATAAATTAATACTCTTACATAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTAATTTAGTATTTAGAATAAATTAATACTCTTACATAGTATT  600

seq1  TCATATAAGTTAGGCTAACATTTAACTTGCTCAGTATAAGGTAATGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAGTTAGGCTAACATTTAACTTGCTCAGTATAAGGTAATGACCA  650

seq1  TTTGCAATGGACCTCCAAATGATGAAATTTATGCATTTAGTATAAATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATGGACCTCCAAATGATGAAATTTATGCATTTAGTATAAATGAT  700

seq1  TCGAATTTAAAACTATATTGCAGGCAGTTCAAAAATTTGCTTAAACTTCT  750
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCG-ATTTAAAACTATATTGCAGGCAGTTC-AAAATTTGCTTAAACTTCT  748

seq1  CTGTTCAAAATAATTGTGTTTATTTCCTGTTGTTTCTATAGC-AAAAAAA  799
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CTGTTCAAAATAATTGTGTTTA-TTCCTGTTGTTTCTATAGCAAAAAAAA  797

seq1  AAATTACTGATATGAAGTGTGTCATGGCCTCAAGTGAATTTCTTCACTGT  849
      |||||||||||||| |||||||||||||||| |||||||||  |||||||
seq2  AAATTACTGATATG-AGTGTGTCATGGCCTCTAGTGAATTTTCTCACTGT  846

seq1  TATTTTTTTTTAATAGTGTGCCATGTGCTGTCTATAGACACCTTGTTAAA  899
      ||||||||||||||| |||||| ||||  |||| |||||||||||  |||
seq2  TATTTTTTTTTAATA-TGTGCCCTGTGTCGTCTTTAGACACCTTG-CAAA  894

seq1  ACAGAAAGTTTTCTCCTAAATGCTTAGC  927
      ||||||||||||||||| ||||||||||
seq2  ACAGAAAGTTTTCTCCT-AATGCTTAGC  921