BAC Information

Click to search

BAC

Clone NameB6Ng01-023M24
Chromosome5 (Build37)
Map Location 89,095,869 - 89,237,158
singlet/doubletdoublet
Overlap geneGrsf1, Mobkl1a, Dck
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023M24.bB6Ng01-023M24.g
ACCDH855630DH855631
length1,0331,082
definitionDH855630|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M24, 5' end.DH855631|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,095,869 - 89,096,904)(89,236,068 - 89,237,158)
sequence
gaattctatgccagcctgagctacagttaagagcctgtctcagaacagaa
gtaaaatctcccaaatcagccaggcatggaggcccacgcctttaatccca
gcacttgggaggcagaggcaggtggatttctgagtttgaggccagcctgg
tctacagagtgagttccaggacagccagggctacacagagaaaccctgtc
tcgaaagaaaacaaaactcccaagtctttttgctatttgttttaagaggc
tacctggttgagaaattgaatcccatggtaagagtaatgggggacactgt
ggagccataaacagaagaggccagtgggagcttttggtcatttggggcct
ggaccatggaaaggaacacatgggtcttccagaatcagttctcaggacag
cagaagctttaagtctgaacctaacctctgagtcacgcattctatagctt
cctttcccatgatgtatttttttttaactttattattattgtgtgaatgt
aagaattaatgtacgtgtagaggttagggaataacttggtggaatctgtt
ttctctttctatcttgacatggggattaaactcaggtctgcaggtagtca
gggtattgagtaaacactttaacttgccaagccgtctctcccaacataat
gtgattcttttttatccccacactaaactgctcttggccaacattcccag
ggaaggttgtgagagggctggattccaaaaccttaccacactggactttt
aagcatctaaaacttggaactaaataaccctactcttttataaagtgagc
atactctatttcttatagtaatgaaagcgaactaatacagtttttgtatt
ttccacaactaacaatctcaagggcttacagttcaattttgcataatcaa
atctatacagaacactaaagctttgaagaacttctctaaaacttaactaa
tgactaataagaatttaaatttatcataaatactatcaggcacattgaca
tgtactattatcttcagaattggggggtggaaa
gaattcagaaaaggggatctaagagaggcagtaaaattagcggctgggca
ttctgatagtatgtttgcgctcaggtgtatatgaactacagctgcctgga
aacttagaacatttaggacagaggccttcccactactctcagaaacgctg
ttgttttcaaatgcaaaactggcccagatgttagcatgaatcccaaatga
gagaaggtagcagagtctactagactgtaggaattgcaagctcagaattc
caacaggatggggccagcagctaatttaagccgcagctaggagcagcaaa
ctttatgcagaagcagcagctgcattttgcgctttaaggctagcaaatcc
tgttctcagaccctctttgtcaagctagaacaaggaagcatggtgggttg
gggtggctggaacaggagctgcagcaggacagctgagaaagtgtggggaa
agcctgcacctgtgcagccacagctatcctctgaatctgcagaaacctct
gaaagctgcagggttggcagctgtggccactgggtttgggaaggacaagc
ggtgagcctgagctggctcgcgggctctgcacggatggacaaaagcaatt
tgttagaactcctactcctaacagcagcgccagcaagagatgccaatgtg
tttgtgctctcagggcgggagaggcggagatactcaaatcatggcagttt
ggtgctgtgaactcgggcatttatgaaaaacttcaaactccaaagttaaa
gaacacataatagaataaacacacgtttgaattagatcattttctcaaca
catttatatccttctaagatacagaatcatagaggggttttattaagaaa
agaatggaggggggtattcaagaaactgcaaatgattcttggtcacttat
aaatactctgtgatgacaaggtctttaatataaccaatgatagcatgtca
tactgcagtctggatttcaagaggaacctagtgatgtactagaatttcat
ttctgcagataaaaagtttaaaagaagggggttgggacagactgctcaaa
gaagaactgcagctgaataatccaggtgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89095869_89096904
seq2: B6Ng01-023M24.b_45_1077

seq1  GAATTCTATGCCAGCCTGAGCTACAGTTAAGAGCCTGTCTCAGAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCAGCCTGAGCTACAGTTAAGAGCCTGTCTCAGAACAGAA  50

seq1  GTAAAATCTCCCAAATCAGCCAGGCATGGAGGCCCACGCCTTTAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCTCCCAAATCAGCCAGGCATGGAGGCCCACGCCTTTAATCCCA  100

seq1  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGG  150

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  200

seq1  TCGAAAGAAAACAAAACTCCCAAGTCTTTTTGCTATTTGTTTTAAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGAAAACAAAACTCCCAAGTCTTTTTGCTATTTGTTTTAAGAGGC  250

seq1  TACCTGGTTGAGAAATTGAATCCCATGGTAAGAGTAATGGGGGACACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTGAGAAATTGAATCCCATGGTAAGAGTAATGGGGGACACTGT  300

seq1  GGAGCCATAAACAGAAGAGGCCAGTGGGAGCTTTTGGTCATTTGGGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATAAACAGAAGAGGCCAGTGGGAGCTTTTGGTCATTTGGGGCCT  350

seq1  GGACCATGGAAAGGAACACATGGGTCTTCCAGAATCAGTTCTCAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGGAAAGGAACACATGGGTCTTCCAGAATCAGTTCTCAGGACAG  400

seq1  CAGAAGCTTTAAGTCTGAACCTAACCTCTGAGTCACGCATTCTATAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTTAAGTCTGAACCTAACCTCTGAGTCACGCATTCTATAGCTT  450

seq1  CCTTTCCCATGATGTATTTTTTTTTAACTTTATTATTATTGTGTGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCATGATGTATTTTTTTTTAACTTTATTATTATTGTGTGAATGT  500

seq1  AAGAATTAATGTACGTGTAGAGGTTAGGGAATAACTTGGTGGAATCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAATGTACGTGTAGAGGTTAGGGAATAACTTGGTGGAATCTGTT  550

seq1  TTCTCTTTCTATCTTGACATGGGGATTAAACTCAGGTCTGCAGGTAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCTATCTTGACATGGGGATTAAACTCAGGTCTGCAGGTAGTCA  600

seq1  GGGTATTGAGTAAACACTTTAACTTGCCAAGCCGTCTCTCCCAACATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGAGTAAACACTTTAACTTGCCAAGCCGTCTCTCCCAACATAAT  650

seq1  GTGATTCTTTTTTATCCCCACACTAAACTGCTCTTGGCCAACATTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTTTTTTATCCCCACACTAAACTGCTCTTGGCCAACATTCCCAG  700

seq1  GGAAGGTTGTGAGAGGGCTGGATTCCAAAACCTTACCACACTGGACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTGTGAGAGGGCTGGATTCCAAAACCTTACCACACTGGACTTTT  750

seq1  AAGCATCTAAAACTTGGAACTAAATAACCCTACTCTTTTATAAAGTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTAAAACTTGGAACTAAATAACCCTACTCTTTTATAAAGTGAGC  800

seq1  ATACTCTATTTCTTATAGTAATGAAAGCGAACTAATACAGTTTTTGTA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATACTCTATTTCTTATAGTAATGAAAGCGAACTAATACAGTTTTTGTATT  850

seq1  TTCCACAACTAACAATCTCAAGGGCTTACAGTTCAATTTTGCATAATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAACTAACAATCTCAAGGGCTTACAGTTCAATTTTGCATAATCAA  900

seq1  ATCTATACAGAACACTAAAAGCTATGAAGAACTTCTCTAAAACTTAACTA  949
      |||||||||||||||| |||||| ||||||||||||||||||||||||| 
seq2  ATCTATACAGAACACT-AAAGCTTTGAAGAACTTCTCTAAAACTTAACT-  948

seq1  AATGACTAATAAGAAATTTAAAAATTATCATAAATACTATCAGGCACATT  999
      |||||||||||||||  || ||| ||||||||||||||||||||||||||
seq2  AATGACTAATAAGAA--TTTAAATTTATCATAAATACTATCAGGCACATT  996

seq1  GACATGTAACTATAATC-TCAGGAGTTGGGGGTGGAAA  1036
      ||||||| ||||| ||| |||| | | |||||||||||
seq2  GACATGT-ACTATTATCTTCAGAATTGGGGGGTGGAAA  1033

seq1: chr5_89236068_89237158
seq2: B6Ng01-023M24.g_68_1149 (reverse)

seq1  GTCTCACCTGGATTTATCAGCTTGGCAGTTCCTCCTCTGAGCAGTCTGTC  50
      ||||||||||||||  ||||||  |||||| || || |||||||||||| 
seq2  GTCTCACCTGGATTATTCAGCT--GCAGTT-CTTCTTTGAGCAGTCTGT-  46

seq1  CCCAACCCCCTTCTTTTATACTTTTTATCTGCAG-AATGAAATTCTAGTT  99
      |||||||||||||||||| ||||||||||||||| ||||||||||||| |
seq2  CCCAACCCCCTTCTTTTAAACTTTTTATCTGCAGAAATGAAATTCTAG-T  95

seq1  ACATCACTAGGTTCCTCTTGAAACTCCAGACTGCAGTATGACATGCTTAT  149
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  ACATCACTAGGTTCCTCTTGAAA-TCCAGACTGCAGTATGACATGC-TAT  143

seq1  CATTGGTTATAATTAAAGACCTTGTCATCACAGAGTATTTATAAGTGACC  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTAT-ATTAAAGACCTTGTCATCACAGAGTATTTATAAGTGACC  192

seq1  ACGAATCATTTGCAGTTTCTTGAATTACCCCCCTCCATTCTTTTCTTAAT  249
      | |||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  AAGAATCATTTGCAGTTTCTTGAA-TACCCCCCTCCATTCTTTTCTTAA-  240

seq1  TAAAACCCCTCTATGATTCTGTATCTTAGAAGGATATAAATGTGTTGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCCTCTATGATTCTGTATCTTAGAAGGATATAAATGTGTTGAGA  290

seq1  AAATGATCTAATTCAAACGTGTGTTTATTCTATTATGTGTTCTTTAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTAATTCAAACGTGTGTTTATTCTATTATGTGTTCTTTAACTT  340

seq1  TGGAGTTTGAAGTTTTTCATAAATGCCCGAGTTCACAGCACCAAACTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTGAAGTTTTTCATAAATGCCCGAGTTCACAGCACCAAACTGCC  390

seq1  ATGATTTGAGTATCTCCGCCTCTCCCGCCCTGAGAGCACAAACACATTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGAGTATCTCCGCCTCTCCCGCCCTGAGAGCACAAACACATTGG  440

seq1  CATCTCTTGCTGGCGCTGCTGTTAGGAGTAGGAGTTCTAACAAATTGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGCTGGCGCTGCTGTTAGGAGTAGGAGTTCTAACAAATTGCTT  490

seq1  TTGTCCATCCGTGCAGAGCCCGCGAGCCAGCTCAGGCTCACCGCTTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATCCGTGCAGAGCCCGCGAGCCAGCTCAGGCTCACCGCTTGTCC  540

seq1  TTCCCAAACCCAGTGGCCACAGCTGCCAACCCTGCAGCTTTCAGAGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACCCAGTGGCCACAGCTGCCAACCCTGCAGCTTTCAGAGGTTT  590

seq1  CTGCAGATTCAGAGGATAGCTGTGGCTGCACAGGTGCAGGCTTTCCCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATTCAGAGGATAGCTGTGGCTGCACAGGTGCAGGCTTTCCCCAC  640

seq1  ACTTTCTCAGCTGTCCTGCTGCAGCTCCTGTTCCAGCCACCCCAACCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCAGCTGTCCTGCTGCAGCTCCTGTTCCAGCCACCCCAACCCAC  690

seq1  CATGCTTCCTTGTTCTAGCTTGACAAAGAGGGTCTGAGAACAGGATTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCTTGTTCTAGCTTGACAAAGAGGGTCTGAGAACAGGATTTGC  740

seq1  TAGCCTTAAAGCGCAAAATGCAGCTGCTGCTTCTGCATAAAGTTTGCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAAAGCGCAAAATGCAGCTGCTGCTTCTGCATAAAGTTTGCTGC  790

seq1  TCCTAGCTGCGGCTTAAATTAGCTGCTGGCCCCATCCTGTTGGAATTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGCGGCTTAAATTAGCTGCTGGCCCCATCCTGTTGGAATTCTG  840

seq1  AGCTTGCAATTCCTACAGTCTAGTAGACTCTGCTACCTTCTCTCATTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAATTCCTACAGTCTAGTAGACTCTGCTACCTTCTCTCATTTGG  890

seq1  GATTCATGCTAACATCTGGGCCAGTTTTGCATTTGAAAACAACAGCGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGCTAACATCTGGGCCAGTTTTGCATTTGAAAACAACAGCGTTT  940

seq1  CTGAGAGTAGTGGGAAGGCCTCTGTCCTAAATGTTCTAAGTTTCCAGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTAGTGGGAAGGCCTCTGTCCTAAATGTTCTAAGTTTCCAGGCA  990

seq1  GCTGTAGTTCATATACACCTGAGCGCAAACATACTATCAGAATGCCCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGTTCATATACACCTGAGCGCAAACATACTATCAGAATGCCCAGC  1040

seq1  CGCTAATTTTACTGCCTCTCTTAGATCCCCTTTTCTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAATTTTACTGCCTCTCTTAGATCCCCTTTTCTGAATTC  1082