BAC Information

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BAC

Clone NameB6Ng01-023P13
Chromosome5 (Build37)
Map Location 126,478,030 - 126,609,903
singlet/doubletdoublet
Overlap geneLOC665760
Upstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
Downstream geneLOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023P13.bB6Ng01-023P13.g
ACCDH855744DH855745
length981999
definitionDH855744|Mus musculus domesticus DNA, BAC clone: B6Ng01-023P13, 5' end.DH855745|Mus musculus domesticus DNA, BAC clone: B6Ng01-023P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,478,030 - 126,479,014)(126,608,901 - 126,609,903)
sequence
gaattctccttagaaaattatttcagccagttaatattgtgccaaaaaat
atttttgtgacatatttgtagatattctacaaggagctcacattcaaatg
catttaacaaatgttgaattaattaaaattaaattcattttttaaacaaa
gatttcaaaatagcctgtcttggacttatggaagaattcagaagacagta
cacattttctttgcatttggacccaagcaggagagcccactcaccttttt
atcattgcttcaaccttgtcatctgtaagatgggtattaatatggaatgt
gcatgtgtaatatccatagaaatactttttgagatcaactttatttttaa
ttatgtgtatttctgtgtatgggtataacgaacatgtgtgcagcgccctt
ggaggccagaaaattgtgttggaacttctggagccatagtgacagacaat
tgtgaaccactagatacgggaatagaactcaggttctctgcaaggtcaat
acatgcatccttatccatggcgccatctctctgctcctgaagctgtgttt
gtaaagtaatagacaaatgcaagtgactgttacacatgagtacttcatta
tgaacttagaataactttgcatggattttcctgtggatttattcaatcag
agttcagatacctttgcaggatactggtgtctcataaaggcaagggttaa
ttgtcaagtttatgacattatgtcttggagggccgtgaatgatggacgat
actcttgttaacttcttattgctgaagagatcaggaattttaattgctcg
gagcatgtgcgatgccttctgcttatgcagaaggacagcagttacatagt
gtgtccaacaccccacctctaattagggatgggatccacacatatgtctt
tcagaatggcttaggacaaacacttgttaccacggtacctgctctgcttg
acttcaggactgaccttcccgggatacaagg
gaattcagtttctatagtctatgtggtgctgtgcagagagacattcttag
tcatgcatgtgttttaatcctgtgagcccatgtctctccgctcatttgac
aatccatctaaggaaaaccagtcagcaggtaattatttattcatttaaat
gtgagctttataagaatattagccaagagaagtaatttaaaaggaaaggt
gtatttctggcagcccgtgtaagttcagtagaatgtttgtttgtttgttt
gtttgtttgtttgtttgtttgtttttctgtgtatgggtgttttgcctgag
tgtactgtatgcatgtgtggtaccttcagaagccagaagaggatatcaga
tccttagagatccttagagatggagttacaggcttttataagataccatg
tgggtgctggaaaaaaagctctatgctctatgctcttagccactgagcca
cctctcccatcccaaataactatttagaaaaaaataataagattttcctg
ttttttagtttgccagtagggtactccaccccctccttcggagactgaag
ccctcatccaacaataaatagagcctgctagcatcttcctctcagatttt
cccatctctcagaaatacaggaatgcaaatctcccttctttgcaaattaa
ctccatctaggatattctgagcatcacagattgaactaagaccatctctt
aatgacactactgtgttgctaaaataactgcctttgtgtgttcagcagga
gagatgcccagaagcagggcaggtcacacatataaaggcacaggtgtaat
ggatgctgaacagagatctcagcccacaggggggtccacttccttgatca
gcttctccctctgaaataaaacttgaagtaaaaacaaaagaattctaagg
agtattttgctctggtctctcagagggtaggttccctgcaaagaaaaaaa
tggaaaagaactcttgactgctgcggtgaatttcttattcggattcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126478030_126479014
seq2: B6Ng01-023P13.b_45_1025

seq1  GAATTCTCCTTAGAAAATTATTTCAGCCAGTTAATATTGTGCCAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAGAAAATTATTTCAGCCAGTTAATATTGTGCCAAAAAAT  50

seq1  ATTTTTGTGACATATTTGTAGATATTCTACAAGGAGCTCACATTCAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGACATATTTGTAGATATTCTACAAGGAGCTCACATTCAAATG  100

seq1  CATTTAACAAATGTTGAATTAATTAAAATTAAATTCATTTTTTAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACAAATGTTGAATTAATTAAAATTAAATTCATTTTTTAAACAAA  150

seq1  GATTTCAAAATAGCCTGTCTTGGACTTATGGAAGAATTCAGAAGACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAATAGCCTGTCTTGGACTTATGGAAGAATTCAGAAGACAGTA  200

seq1  CACATTTTCTTTGCATTTGGACCCAAGCAGGAGAGCCCACTCACCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCTTTGCATTTGGACCCAAGCAGGAGAGCCCACTCACCTTTTT  250

seq1  ATCATTGCTTCAACCTTGTCATCTGTAAGATGGGTATTAATATGGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTTCAACCTTGTCATCTGTAAGATGGGTATTAATATGGAATGT  300

seq1  GCATGTGTAATATCCATAGAAATACTTTTTGAGATCAACTTTATTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTAATATCCATAGAAATACTTTTTGAGATCAACTTTATTTTTAA  350

seq1  TTATGTGTATTTCTGTGTATGGGTATAACGAACATGTGTGCAGCGCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATTTCTGTGTATGGGTATAACGAACATGTGTGCAGCGCCCTT  400

seq1  GGAGGCCAGAAAATTGTGTTGGAACTTCTGGAGCCATAGTGACAGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGAAAATTGTGTTGGAACTTCTGGAGCCATAGTGACAGACAAT  450

seq1  TGTGAACCACTAGATACGGGAATAGAACTCAGGTTCTCTGCAAGGTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCACTAGATACGGGAATAGAACTCAGGTTCTCTGCAAGGTCAAT  500

seq1  ACATGCATCCTTATCCATGGCGCCATCTCTCTGCTCCTGAAGCTGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCCTTATCCATGGCGCCATCTCTCTGCTCCTGAAGCTGTGTTT  550

seq1  GTAAAGTAATAGACAAATGCAAGTGACTGTTACACATGAGTACTTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAATAGACAAATGCAAGTGACTGTTACACATGAGTACTTCATTA  600

seq1  TGAACTTAGAATAACTTTGCATGGATTTTCCTGTGGATTTATTCAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGAATAACTTTGCATGGATTTTCCTGTGGATTTATTCAATCAG  650

seq1  AGTTCAGATACCTTTGCAGGATACTGGTGTCTCATAAAGGCAAGGGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGATACCTTTGCAGGATACTGGTGTCTCATAAAGGCAAGGGTTAA  700

seq1  TTGTCAAGTTTATGACATTATGTCTTGGAGGGCCGTGAATGATGGACGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGTTTATGACATTATGTCTTGGAGGGCCGTGAATGATGGACGAT  750

seq1  ACTCTTGTTAACTTCTTATTGCTGAAGAGATCAGGAA-TTTAATTGCTCG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTCTTGTTAACTTCTTATTGCTGAAGAGATCAGGAATTTTAATTGCTCG  800

seq1  GAGCATGTGCGATGCCTTCTGCTTATGCAGAAGGACAGCAGGTTACATAG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGCATGTGCGATGCCTTCTGCTTATGCAGAAGGACAGCA-GTTACATAG  849

seq1  TGTGTCCAACACCCCACCTCTAATTAGGAATGGGATCCACACATATGTCT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTGTCCAACACCCCACCTCTAATTAGGGATGGGATCCACACATATGTCT  899

seq1  TTCAGAATGGCTTAGGACAAAACACCTGTTACCACGGTACCATGCTCTGC  949
      |||||||||||||||||| |||||| ||||||||||||||| ||||||||
seq2  TTCAGAATGGCTTAGGAC-AAACACTTGTTACCACGGTACC-TGCTCTGC  947

seq1  TTGACTTCAAGGACTGACCTTCCCGGGATGACAAGG  985
      |||||||| |||||||||||||||||||| ||||||
seq2  TTGACTTC-AGGACTGACCTTCCCGGGAT-ACAAGG  981

seq1: chr5_126608901_126609903
seq2: B6Ng01-023P13.g_69_1067 (reverse)

seq1  AATGAATACACGAATAAGAAATTACACAGCAGCAGTCAGGAGTTCTTTTC  50
      |||||||   ||||||||||||| ||| |||||||||| |||||||||||
seq2  AATGAAT--CCGAATAAGAAATT-CACCGCAGCAGTCAAGAGTTCTTTTC  47

seq1  CATTTTTTTTCTTCTGCAGGGAACCTGACCCTCTTGAGAGACCAGAGCAA  100
      || |||||||||| |||||||||||| |||||| ||||||||||||||||
seq2  CA-TTTTTTTCTT-TGCAGGGAACCT-ACCCTC-TGAGAGACCAGAGCAA  93

seq1  AATACTCCTTAGATTTCTTTTGTTTTTACTTCAAGTTTTATTTCAGAGGG  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATACTCCTTAGAATTCTTTTGTTTTTACTTCAAGTTTTATTTCAGAGGG  143

seq1  AGAAGCTGATCAAGGAAGTGGA-CCCCCTGTGGGCTGGGATCTCTGTTCA  199
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  AGAAGCTGATCAAGGAAGTGGACCCCCCTGTGGGCTGAGATCTCTGTTCA  193

seq1  GCATCCATTACACCTGTGCCTTTATATGTGTGACCTGCCCTGCTTCTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATTACACCTGTGCCTTTATATGTGTGACCTGCCCTGCTTCTGGG  243

seq1  CATCTCTCCTGCTGAACACACAAAGGCAGTTATTTTAGCAACACAGTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCTGCTGAACACACAAAGGCAGTTATTTTAGCAACACAGTAGT  293

seq1  GTCATTAAGAGATGGTCTTAGTTCAATCTGTGATGCTCAGAATATCCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAAGAGATGGTCTTAGTTCAATCTGTGATGCTCAGAATATCCTAG  343

seq1  ATGG-GTTAATTTGCAAAGAAGGGAGATTTGCATTCCTGTATTTCTGAGA  398
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTAATTTGCAAAGAAGGGAGATTTGCATTCCTGTATTTCTGAGA  393

seq1  GATGGG-AAATCTGAGAGGAAGATGCTAGCAGGCTCTATTTATTGTTGGA  447
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAAATCTGAGAGGAAGATGCTAGCAGGCTCTATTTATTGTTGGA  443

seq1  TGAGGGCTTCAGTCTCCGAAGGAGGGGGTGGAGTACCCTACTGGCAAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTTCAGTCTCCGAAGGAGGGGGTGGAGTACCCTACTGGCAAACT  493

seq1  AAAAAACAGGAAAATCTTATTATTTTTTTCTAAATAGTTATTTGGGATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGGAAAATCTTATTATTTTTTTCTAAATAGTTATTTGGGATGG  543

seq1  GAGAGGTGGCTCAGTGGCTAAGAGCATAGAGCATAGAGCTTTTTTTCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGCTCAGTGGCTAAGAGCATAGAGCATAGAGCTTTTTTTCCAG  593

seq1  CACCCACATGGTATCTTATAAAAGCCTGTAACTCCATCTCTAAGGATCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATGGTATCTTATAAAAGCCTGTAACTCCATCTCTAAGGATCTC  643

seq1  TAAGGATCTGATATCCTCTTCTGGCTTCTGAAGGTACCACACATGCATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCTGATATCCTCTTCTGGCTTCTGAAGGTACCACACATGCATAC  693

seq1  AGTACACTCAGGCAAAACACCCATACACAGAAAAACAAACAAACAAACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTCAGGCAAAACACCCATACACAGAAAAACAAACAAACAAACAA  743

seq1  ACAAACAAACAAACAAACAAACATTCTACTGAACTTACACGGGCTGCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACATTCTACTGAACTTACACGGGCTGCCAG  793

seq1  AAATACACCTTTCCTTTTAAATTACTTCTCTTGGCTAATATTCTTATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACCTTTCCTTTTAAATTACTTCTCTTGGCTAATATTCTTATAAA  843

seq1  GCTCACATTTAAATGAATAAATAATTACCTGCTGACTGGTTTTCCTTAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTTAAATGAATAAATAATTACCTGCTGACTGGTTTTCCTTAGA  893

seq1  TGGATTGTCAAATGAGCGGAGAGACATGGGCTCACAGGATTAAAACACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGTCAAATGAGCGGAGAGACATGGGCTCACAGGATTAAAACACAT  943

seq1  GCATGACTAAGAATGTCTCTCTGCACAGCACCACATAGACTATAGAAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTAAGAATGTCTCTCTGCACAGCACCACATAGACTATAGAAACT  993

seq1  GAATTC  1003
      ||||||
seq2  GAATTC  999