BAC Information

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BAC

Clone NameB6Ng01-024C11
Chromosome5 (Build37)
Map Location 32,059,892 - 32,200,985
singlet/doubletdoublet
Overlap geneBre
Upstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024C11.bB6Ng01-024C11.g
ACCDH855875DH855876
length9781,094
definitionDH855875|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C11, 5' end.DH855876|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,200,013 - 32,200,985)(32,059,892 - 32,061,002)
sequence
gaatttctggtttgggatgaggacagaattttcaacagtttctgaactgg
tcctgaagtcagaccatggttctgccattttgtgccatatattacatata
aagaagcgtccttaacactgaaggcgtcagaatcaaaatgtccatcagct
caaatattcacatgacttcatttttatgtaaaaataaacaacctcaccat
tttaccaatgcaaattttcttttgattttaaaaaatggtaaaattatgtc
taccaaaacctttctttgaagaatatttccttaagacatttatcaacaaa
tgcttgatgtttatcacaaaagtattttatatacctttataaacagggtt
gtataaaaagctacccatgagtaaaaagggcccatgagtagagagcttaa
aaacccaccacagccactgcaacagtacaaggctgtccagtgccactcct
ttccaggagccttcctaaagcagcaggagctcgtctatcctccttgtctt
tgtcatcgtcatcgttgtcgtcttctccttctttattagatattttcttt
atttacatttcaaatgttatcccctttgctggtttcccacttatatgatt
ccccttccccctgcttctatgaggttgttcccccaccaacccacccaccc
acctccctgccttcacattccccctatacaggggcatccacccttcatag
taccaagagcatctcctcccattgatgccagacaaggtcattctcttgct
acatatgagactggagccatgggtccttcaatgtttactctttggttggt
gattttagtccctgggagctctgggggggggtactactgcgttgatattg
ttgttctttctatgggggttgcaaacccccttcagtccttcagtcctttc
tctaacttcttccattgggggaccttctccatgctcaatccaatggtggg
cttcaacttctcctttgtatttgtcagg
gaattcagcccaggttctctgcaagagcagtaaatgctcttcacactgag
ccatggctccagcccctgttgtttttctcttaatgactgctattctcttt
gggttgagatctcaatgttgttttaatttccacttctatgatggttagta
agaccacatccccatttcataggttttatttatttattttttctactgca
ttggagtgaccctggagacatgtgcttctctccgttctccacccttcctt
catctagcagcccctgcgcatagctttctcctacagacccttcttgcttt
gtttatttctgacttcagtaactttcctggctgaaatatggctgcctttg
ttctttgtcaaccgaaacttgaataatcagaaaaactacaactaacatgt
tgctttgacaaattgattattaattttgctgccttcctcctcccatcccc
cgttagcttcctacaagcactggctagagctttttagctttccacttgag
tagtagactatttgtattttatatttaatgtttctcaaaagcattttctt
atatctatttttgaagggttttatattttcattgctgttttaaagcatta
aaatttttcattcatttcagtttttctccatgttagcctctgtatttctg
agcttgcttttctttattgttagattcattgtttagatctgtcacctgag
aatggaaactatccttcataccgtaaaagacatgtttttcttttgttaat
tgggcatttcagagctgtttgacaatagatagttttattcagcttttttc
ataaattccacaggaaagtgcctgatttccacggtttatggaggtgtgga
cttgtgcacggtctttcagcactgttgtatgggagtgaggcactaaccct
gcctaggaccatcctctgtgtgcaggttgactgctcagtgctctggctca
tgtctgtgtgtggatcagcaaaaactcattgttgaacaatgaacccgaac
tcagaaccatgggtgtggttttcccccccccctatttacatctgtggtta
tttccctgattttggcaagttgtttggtgtgtggcaaacatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32200013_32200985
seq2: B6Ng01-024C11.b_40_1013 (reverse)

seq1  CCTGACAAATACAGAGGTGAATGCTCGAAGCCAACCATTGGATTGAGCAA  50
      ||||||||||||| ||| |||   | |||||| ||||||||||||||| |
seq2  CCTGACAAATACAAAGGAGAA--GTTGAAGCCCACCATTGGATTGAGC-A  47

seq1  TGGAGAAGGGTCCCCAATGG-AGAAGTTAGAGAAAGGACTGAAGGAGCTG  99
      |||||||||  ||||||||| ||||||||||||||||||||||||| |||
seq2  TGGAGAAGGTCCCCCAATGGAAGAAGTTAGAGAAAGGACTGAAGGA-CTG  96

seq1  AAGGGGGTTTGCAA-CCCCATAGAAAGAACAACAATATCAACGCAGTAGT  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTTTGCAACCCCCATAGAAAGAACAACAATATCAACGCAGTAGT  146

seq1  ACCCCCCCCCAGAGCTCCCAGGGACT-AAATCACCAACCAAAGAGTAAAC  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCCCCCCCCAGAGCTCCCAGGGACTAAAATCACCAACCAAAGAGTAAAC  196

seq1  ATTGAAGGACCCATGGCTCCAGTCTCATATGTAGC-AGAGAATGACCTTG  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTGAAGGACCCATGGCTCCAGTCTCATATGTAGCAAGAGAATGACCTTG  246

seq1  TCTGGCATCAATGGGAGGAGATGCTCTTGGTACTATGAAGGGTGGATGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATCAATGGGAGGAGATGCTCTTGGTACTATGAAGGGTGGATGCC  296

seq1  CCTGTATA-GGGGAATGTGAAGGCAGGGAGGTGGGTGGGTGGGTTGGTGG  345
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATAGGGGGAATGTGAAGGCAGGGAGGTGGGTGGGTGGGTTGGTGG  346

seq1  GGGAACAACCTCATAGAAGCAGGGGGAAGGGGAATCATATAAGTGGGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAACCTCATAGAAGCAGGGGGAAGGGGAATCATATAAGTGGGAAA  396

seq1  CCAGCAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAA  446

seq1  AGAAGGAGAAGACGACAACGATGACGATGACAAAGACAAGGAGGATAGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAGACGACAACGATGACGATGACAAAGACAAGGAGGATAGAC  496

seq1  GAGCTCCTGCTGCTTTAGGAAGGCTCCTGGAAAGGAGTGGCACTGGACAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTGCTGCTTTAGGAAGGCTCCTGGAAAGGAGTGGCACTGGACAG  546

seq1  CCTTGTACTGTTGCAGTGGCTGTGGTGGGTTTTTAAGCTCTCTACTCATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTGTTGCAGTGGCTGTGGTGGGTTTTTAAGCTCTCTACTCATG  596

seq1  GGCCCTTTTTACTCATGGGTAGCTTTTTATACAACCCTGTTTATAAAGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTTTTACTCATGGGTAGCTTTTTATACAACCCTGTTTATAAAGGT  646

seq1  ATATAAAATACTTTTGTGATAAACATCAAGCATTTGTTGATAAATGTCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATACTTTTGTGATAAACATCAAGCATTTGTTGATAAATGTCTT  696

seq1  AAGGAAATATTCTTCAAAGAAAGGTTTTGGTAGACATAATTTTACCATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATATTCTTCAAAGAAAGGTTTTGGTAGACATAATTTTACCATTT  746

seq1  TTTAAAATCAAAAGAAAATTTGCATTGGTAAAATGGTGAGGTTGTTTATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCAAAAGAAAATTTGCATTGGTAAAATGGTGAGGTTGTTTATT  796

seq1  TTTACATAAAAATGAAGTCATGTGAATATTTGAGCTGATGGACATTTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAAATGAAGTCATGTGAATATTTGAGCTGATGGACATTTTGA  846

seq1  TTCTGACGCCTTCAGTGTTAAGGACGCTTCTTTATATGTAATATATGGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACGCCTTCAGTGTTAAGGACGCTTCTTTATATGTAATATATGGCA  896

seq1  CAAAATGGCAGAACCATGGTCTGACTTCAGGACCAGTTCAGAAACTGTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCAGAACCATGGTCTGACTTCAGGACCAGTTCAGAAACTGTTG  946

seq1  AAAATTCTGTCCTCATCCCAAACCAGAA  973
      ||||||||||||||||||||||||||||
seq2  AAAATTCTGTCCTCATCCCAAACCAGAA  974

seq1: chr5_32059892_32061002
seq2: B6Ng01-024C11.g_69_1162

seq1  GAATTCAGCCCAGGTTCTCTGCAAGAGCAGTAAATGCTCTTCACACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCAGGTTCTCTGCAAGAGCAGTAAATGCTCTTCACACTGAG  50

seq1  CCATGGCTCCAGCCCCTGTTGTTTTTCTCTTAATGACTGCTATTCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCAGCCCCTGTTGTTTTTCTCTTAATGACTGCTATTCTCTTT  100

seq1  GGGTTGAGATCTCAATGTTGTTTTAATTTCCACTTCTATGATGGTTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGATCTCAATGTTGTTTTAATTTCCACTTCTATGATGGTTAGTA  150

seq1  AGACCACATCCCCATTTCATAGGTTTTATTTATTTATTTTTTCTACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACATCCCCATTTCATAGGTTTTATTTATTTATTTTTTCTACTGCA  200

seq1  TTGGAGTGACCCTGGAGACATGTGCTTCTCTCCGTTCTCCACCCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGACCCTGGAGACATGTGCTTCTCTCCGTTCTCCACCCTTCCTT  250

seq1  CATCTAGCAGCCCCTGCGCATAGCTTTCTCCTACAGACCCTTCTTGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCAGCCCCTGCGCATAGCTTTCTCCTACAGACCCTTCTTGCTTT  300

seq1  GTTTATTTCTGACTTCAGTAACTTTCCTGGCTGAAATATGGCTGCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTCTGACTTCAGTAACTTTCCTGGCTGAAATATGGCTGCCTTTG  350

seq1  TTCTTTGTCAACCGAAACTTGAATAATCAGAAAAACTACAACTAACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCAACCGAAACTTGAATAATCAGAAAAACTACAACTAACATGT  400

seq1  TGCTTTGACAAATTGATTATTAATTTTGCTGCCTTCCTCCTCCCATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGACAAATTGATTATTAATTTTGCTGCCTTCCTCCTCCCATCCCC  450

seq1  CGTTAGCTTCCTACAAGCACTGGCTAGAGCTTTTTAGCTTTCCACTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCTTCCTACAAGCACTGGCTAGAGCTTTTTAGCTTTCCACTTGAG  500

seq1  TAGTAGACTATTTGTATTTTATATTTAATGTTTCTCAAAAGCATTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACTATTTGTATTTTATATTTAATGTTTCTCAAAAGCATTTTCTT  550

seq1  ATATCTATTTTTGAAGGGTTTTATATTTTCATTGCTGTTTTAAAGCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTTTTGAAGGGTTTTATATTTTCATTGCTGTTTTAAAGCATTA  600

seq1  AAATTTTTCATTCATTTCAGTTTTTCTCCATGTTAGCCTCTGTATTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCATTCATTTCAGTTTTTCTCCATGTTAGCCTCTGTATTTCTG  650

seq1  AGCTTGCTTTTCTTTATTGTTAGATTCATTGTTTAGATCTGTCACCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTTTCTTTATTGTTAGATTCATTGTTTAGATCTGTCACCTGAG  700

seq1  AATGGAAACTATCCTTCATACCGTAAAAGACATGTTTTTCTTTTGTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACTATCCTTCATACCGTAAAAGACATGTTTTTCTTTTGTTAAT  750

seq1  TGGGCATTTCAGAGCTGTTTGACAATAGATAGTTTTATTCAGCTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGGCATTTCAGAGCTGTTTGACAATAGATAGTTTTATTCAGC-TTTTTT  799

seq1  CATAAATTCCACAGGAAAGTGCCTGATTTCCACGGTTTATGGAGGTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTCCACAGGAAAGTGCCTGATTTCCACGGTTTATGGAGGTGTGG  849

seq1  ACTTGTGCACGGTCTTTCAGGCACTGTTGTATGGGAGTGAGGCACTAACC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTGTGCACGGTCTTTCA-GCACTGTTGTATGGGAGTGAGGCACTAACC  898

seq1  CTGCCTAGGACCATCCTCTGTGTGCAGGTTTGACTGCTCCGGGTGCTCTG  950
      |||||||||||||||||||||||||||| ||||||||||   ||||||||
seq2  CTGCCTAGGACCATCCTCTGTGTGCAGG-TTGACTGCTC--AGTGCTCTG  945

seq1  GCTCATGTCTGTGTGTGGAGTCAGCAAAAGACTCATTGTTGAACAATGAA  1000
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GCTCATGTCTGTGTGTGGA-TCAGCAAAA-ACTCATTGTTGAACAATGAA  993

seq1  CTCAGAACTCAAGAAACATTGGTGTGGTTTTCCCCCCCCCTCATTTAGCA  1050
      | | |||||| |||| ||| ||||||||||||||||||||  ||||| ||
seq2  C-CCGAACTC-AGAACCATGGGTGTGGTTTTCCCCCCCCCCTATTTA-CA  1040

seq1  TTCTGTGGTTATTTCTCCTGATTTTTTTGGCAAGTGTTGTTT-GTGTGTG  1099
       |||||||||||||| |||||   |||||||||  ||||||| |||||||
seq2  -TCTGTGGTTATTTC-CCTGA---TTTTGGCAA--GTTGTTTGGTGTGTG  1083

seq1  TCAAACTATGCC  1111
       ||||| |||||
seq2  GCAAAC-ATGCC  1094