BAC Information

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BAC

Clone NameB6Ng01-025F12
Chromosome5 (Build37)
Map Location 122,298,847 - 122,421,879
singlet/doubletdoublet
Overlap geneA230106M15Rik, Cutl2
Upstream geneOas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3
Downstream geneLOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F12.bB6Ng01-025F12.g
ACCDH856723DH856724
length1,064685
definitionDH856723|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F12, 5' end.DH856724|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,420,889 - 122,421,879)(122,298,847 - 122,299,531)
sequence
gaattcctctcatcttccataactggctactcatagctgcaagagaaccg
ggaagagatcacccaccccaagttcaggtgtccacatcctgactctcagt
agcaagatccacatgaatggggtacccctaatccaaattgactgctgtcc
ttggacgatgaggcggctatgacccagacacacagacaaatggcgtatga
ggacaccacagatcatcagtgctgtgggccaggtagtggtgagtggctac
acagtgtaaggcagtgcgccagcaccatagacccacggacttgggacggc
cacatcatggacattgtatcatgtgtgacttaccatcttggcggctactg
cttggaatcgctccccttgtggtaccgagccatgctgtgtctgtctgtct
gtctgtcctcattctttctgtagcgctgggtatggagcaagggcccttgt
gcatgttagggagacactctgctactaagccaagccacaccacagccctc
tactgcagtcaaaggatctgaagcagatcttttggatggacctaagaagt
agatactgtcaatgcataggcaagggcacctgtgtctaacagtgtcaagg
ttcacggagggtaaagcatttgtccgaagtcacacagcttgctggctgct
gcactggtttttgggtctgagatctgttctcactgctccttgccttgacc
taccccagcctgtgatttgtaaaacagggtttgtgttgttgttgttattt
tctttggctggaaacgttcaggcaaatagacctttgtcactgagacagtc
cctgctgtgcagggtcagcagaagcaacccacggctacttggtccttacg
agaagtcagtagcgtttgttggcttgcgatgagttgatctgtaggtacca
tccagtgtccccagggaagacaccactgggttaggctgggctttgttccc
tggagcctcttggccacacccagatgctctgcgactgctcagtcttagcc
tacacttatgagtctgtgagatgcccagcatgtagagaggtattgaagaa
gggctcccgtgttt
gaattctgggaactcccgaccctggcacggtccctttaagagggattttt
caggcgcgcgtgtgggggcgtggtaaattcgggggcgggaccttgcaggg
ctgaccaatgggcaggcgcgtgtggctcggaggcgttccccctcctgggc
gggccgctcagggttaaaggggcgcccgcgggtcgccgccactcggcctc
cgggagacaaagggccctgtcgtcgccggcccccgagctgttccgggcca
tgggcaggacagaccgtcgcgccggtcccagagccaggtaaagccgggcg
ggacgggaccgcgacggggtcggcagccgcgcggctgtcgcccgggaccc
gcccgcggcctccatcgcggcccggccggcgcaccacgggggcttgaggt
tccgcggtggtgatgccctgcctccgtttccctcgagtcctagccgcggg
gccagctgtgaccccacgaatggaggactcatcacttgtcttaatttttt
atgtatttacttttgtttacgtgtgcgtgtgtggaggtcagaagacaact
tggggggagtccgggctttccttcttctacttggtttctggggatcaaac
tcgggtcagaaagcttgacagccagcgtctttatccgctaaactgtttta
ttttgttttgtttttggtggggtttgttgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122420889_122421879
seq2: B6Ng01-025F12.b_46_1037 (reverse)

seq1  CTGAGCAGTCGCAGAGCATCCTGGGTGTGGCCAAGAGGCTCCAGGGAACC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CTGAGCAGTCGCAGAGCAT-CTGGGTGTGGCCAAGAGGCTCCAGGGAACA  49

seq1  AAGCCCAGCCTAACCCAGTGGTGTCTTCCCTGGGGACACTGGATGGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGCCTAACCCAGTGGTGTCTTCCCTGGGGACACTGGATGGTACC  99

seq1  TACAGATCAACTCATCGCAAGCCAACAAACGCTACTGACATCTCGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  TACAGATCAACTCATCGCAAGCCAACAAACGCTACTGACTTCTCGTAAGG  149

seq1  ACCAAGTAGCCGTGGGTTGCTTCTGCTGACCCTGCACAGCAGGGACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGCCGTGGGTTGCTTCTGCTGACCCTGCACAGCAGGGACTGTC  199

seq1  TCAGTGACAAAGGTCTATTTGCCTGAACGTTTCCAGCCAAAG-AAATAAC  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAGTGACAAAGGTCTATTTGCCTGAACGTTTCCAGCCAAAGAAAATAAC  249

seq1  AACAACAACAC-AACCCTGTTTTACAAATCACAGGCTGGGGTAGGTCAAG  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACACAAACCCTGTTTTACAAATCACAGGCTGGGGTAGGTCAAG  299

seq1  GCAAGGAGCAGTGAGAACAGATCTCAGACCCAAAAACCAGTGCAGCAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGCAGTGAGAACAGATCTCAGACCCAAAAACCAGTGCAGCAGCC  349

seq1  AGCAAGCTGTGTGACTTCGGACAAATGCTTTACCCTCCGTGAACCTTGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTGTGTGACTTCGGACAAATGCTTTACCCTCCGTGAACCTTGAC  399

seq1  ACTGTTAGACACAGGTGCCCTTGCCTATGCATTGACAGTATCTACTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGACACAGGTGCCCTTGCCTATGCATTGACAGTATCTACTTCTT  449

seq1  AGGTCCATCCAAAAGATCTGCTTCAGATCCTTTGACTGCAGTAGAGGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCATCCAAAAGATCTGCTTCAGATCCTTTGACTGCAGTAGAGGGCT  499

seq1  GTGGTGTGGCTTGGCTTAGTAGCAGAGTGTCTCCCTAACATGCACAAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGCTTGGCTTAGTAGCAGAGTGTCTCCCTAACATGCACAAGGG  549

seq1  CCCTTGCTCCATACCCAGCGCTACAGAAAGAATGAGGACAGACAGACAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTCCATACCCAGCGCTACAGAAAGAATGAGGACAGACAGACAGA  599

seq1  CAGACACAGCATGGCTCGGTACCACAAGGGGAGCGATTCCAAGCAGTAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGCATGGCTCGGTACCACAAGGGGAGCGATTCCAAGCAGTAGC  649

seq1  CGCCAAGATGGTAAGTCACACATGATACAATGTCCATGATGTGGCCGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGATGGTAAGTCACACATGATACAATGTCCATGATGTGGCCGTCC  699

seq1  CAAGTCCGTGGGTCTATGGTGCTGGCGCACTGCCTTACACTGTGTAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCGTGGGTCTATGGTGCTGGCGCACTGCCTTACACTGTGTAGCCA  749

seq1  CTCACCACTACCTGGCCCACAGCACTGATGATCTGTGGTGTCCTCATACG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACTACCTGGCCCACAGCACTGATGATCTGTGGTGTCCTCATACG  799

seq1  CCATTTGTCTGTGTGTCTGGGTCATAGCCGCCTCATCGTCCAAGGACAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCTGTGTGTCTGGGTCATAGCCGCCTCATCGTCCAAGGACAGC  849

seq1  AGTCAATTTGGATTAGGGGTACCCCATTCATGTGGATCTTGCTACTGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTGGATTAGGGGTACCCCATTCATGTGGATCTTGCTACTGAGA  899

seq1  GTCAGGATGTGGACACCTGAACTTGGGGTGGGTGATCTCTTCCCGGTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATGTGGACACCTGAACTTGGGGTGGGTGATCTCTTCCCGGTTCT  949

seq1  CTTGCAGCTATGAGTAGCCAGTTATGGAAGATGAGAGGAATTC  991
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCTATGAGTAGCCAGTTATGGAAGATGAGAGGAATTC  992

seq1: chr5_122298847_122299531
seq2: B6Ng01-025F12.g_67_751

seq1  GAATTCTGGGAACTCCCGACCCTGGCACGGTCCCTTTAAGAGGGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACTCCCGACCCTGGCACGGTCCCTTTAAGAGGGATTTTT  50

seq1  CAGGCGCGCGTGTGGGGGCGTGGTAAATTCGGGGGCGGGACCTTGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCGCGTGTGGGGGCGTGGTAAATTCGGGGGCGGGACCTTGCAGGG  100

seq1  CTGACCAATGGGCAGGCGCGTGTGGCTCGGAGGCGTTCCCCCTCCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAATGGGCAGGCGCGTGTGGCTCGGAGGCGTTCCCCCTCCTGGGC  150

seq1  GGGCCGCTCAGGGTTAAAGGGGCGCCCGCGGGTCGCCGCCACTCGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGCTCAGGGTTAAAGGGGCGCCCGCGGGTCGCCGCCACTCGGCCTC  200

seq1  CGGGAGACAAAGGGCCCTGTCGTCGCCGGCCCCCGAGCTGTTCCGGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGACAAAGGGCCCTGTCGTCGCCGGCCCCCGAGCTGTTCCGGGCCA  250

seq1  TGGGCAGGACAGACCGTCGCGCCGGTCCCAGAGCCAGGTAAAGCCGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGACAGACCGTCGCGCCGGTCCCAGAGCCAGGTAAAGCCGGGCG  300

seq1  GGACGGGACCGCGACGGGGTCGGCAGCCGCGCGGCTGTCGCCCGGGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGACCGCGACGGGGTCGGCAGCCGCGCGGCTGTCGCCCGGGACCC  350

seq1  GCCCGCGGCCTCCATCGCGGCCCGGCCGGCGCACCACGGGGGCTTGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCGGCCTCCATCGCGGCCCGGCCGGCGCACCACGGGGGCTTGAGGT  400

seq1  TCCGCGGTGGTGATGCCCTGCCTCCGTTTCCCTCGAGTCCTAGCCGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGGTGGTGATGCCCTGCCTCCGTTTCCCTCGAGTCCTAGCCGCGGG  450

seq1  GCCAGCTGTGACCCCACGAATGGAGGACTCATCACTTGTCTTAATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTGACCCCACGAATGGAGGACTCATCACTTGTCTTAATTTTTT  500

seq1  ATGTATTTACTTTTGTTTACGTGTGCGTGTGTGGAGGTCAGAAGACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACTTTTGTTTACGTGTGCGTGTGTGGAGGTCAGAAGACAACT  550

seq1  TGGGGGGAGTCCGGGCTTTCCTTCTTCTACTTGGTTTCTGGGGATCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGTCCGGGCTTTCCTTCTTCTACTTGGTTTCTGGGGATCAAAC  600

seq1  TCGGGTCAGAAAGCTTGACAGCCAGCGTCTTTATCCGCTAAACTGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTCAGAAAGCTTGACAGCCAGCGTCTTTATCCGCTAAACTGTTTTA  650

seq1  TTTTGTTTTGTTTTTGGTGGGGTTTGTTGTTGTTT  685
      |||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTGGTGGGGTTTGTTGTTGTTT  685