BAC Information

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BAC

Clone NameB6Ng01-025I03
Chromosome5 (Build37)
Map Location 91,139,765 - 91,261,794
singlet/doubletdoublet
Overlap geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
Upstream geneAdamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6
Downstream geneCxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I03.bB6Ng01-025I03.g
ACCDH856835DH856836
length6781,181
definitionDH856835|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I03, 5' end.DH856836|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,139,765 - 91,140,442)(91,260,614 - 91,261,794)
sequence
gaattcacagagaccaacatgtctttgcctcttaagtgctggaattaagg
gcacacaccaccattccaggctaaactgacacaatattatatcaactcct
aatgatttcctaggatacacttagatcaattcatctctcagccctcagtt
gcccataagaagtgacagctgttgctgggataccttaggcaggcaatgag
atgggaacaaagatgttttaaatttgttttatatttatttatttggagag
agagagagagagagagagagagagagagagagagagagagtgagagagaa
taatctctctccttatcgcatgagttctgggactggaactcatcaacttg
gcagaaaactcccttgttcaccaagccatggcctgagtaataataatgaa
cagggatcatttattttcaaggtggaattgaatggaggataaagatttta
gatgggtatgcagacagtttatggggttgcttccttaaattccaggagca
agcacttggaaaaggcaatctaaagtctagttagcactaagactcatagc
aacagggaaacagttgggcaaagccacacaagaattctatggaggcagat
gaagtgtctttctgactcaaatccaatcttcaaaaactcttctgtgttat
taaggctttccaaggtcacaagcaaggc
gaattctttagttcccagagtagcaaccacaagcctttccccagccccct
ttctttttctttcttgagccaagaatatgatctggtacacaaactcgttt
caaaagtatgcctaatctttccactgcatgcttgcggttagagatttgcc
tcatactccacacaaactcagccaagagtttaacagttcgaagaaaagtc
tccgtgtaacagtaaataagcctgtgtaaaacagagggggagtacgcagt
caggagtgagacacccctactctcagcctgcatcggccagtatcacacac
acacacacacacacaccccacagcgactgtttgcacttacatttaagtca
aaccaaaacaaagcttcagatcctgaactggtctgcttgcactttcggga
ggcagcagctaagtgttccatggctactgtctgagagcgaaggtctgata
agcccatctgtcactgatataaacttaattggacaactttgctctgcacg
gccactctcaagctttaaaacaaaacaaaacaaaacaaaactcaaagtga
ctttgaatttttaaaactaaccaagggaccctagaaccccactttcagaa
cgtaggctatctgcatttatatttactgaatgacaaattaagactggaaa
attttctactagcttctaagacactgacatcttcacacatgataccactg
gagcactcctgtggtgagccaggaaaacatcttcacagagttatgagact
ctttcggcctcatagatgctctgaaggtgtctttggcatctcctgggacc
ccagacctcatttttgagaacgcttatctaagatacccctggctcccatt
tacctccaaatgcacatggtgctgcttttgctcaaaggttccaccagact
tccagagtttgtgaaagtaaaatgcaacaaccaccttatgtattccaagc
caggcttttctgggaggaactaaaaaatgaaatcttcagcaactactgct
tgaataaggcccagtgtgttctgagaacgtgttactattggcttacaatg
cagcttaatgactgccgttgaccctaggtggctttcctacgttgttatgg
taaatacatgcagcctcaaacatgaccgggacatttacacttgcccatgc
ccacagtggttgtaattctcaagagtcagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91139765_91140442
seq2: B6Ng01-025I03.b_45_722

seq1  GAATTCACAGAGACCAACATGTCTTTGCCTCTTAAGTGCTGGAATTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGACCAACATGTCTTTGCCTCTTAAGTGCTGGAATTAAGG  50

seq1  GCACACACCACCATTCCAGGCTAAACTGACACAATATTATATCAACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCACCATTCCAGGCTAAACTGACACAATATTATATCAACTCCT  100

seq1  AATGATTTCCTAGGATACACTTAGATCAATTCATCTCTCAGCCCTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTCCTAGGATACACTTAGATCAATTCATCTCTCAGCCCTCAGTT  150

seq1  GCCCATAAGAAGTGACAGCTGTTGCTGGGATACCTTAGGCAGGCAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAAGAAGTGACAGCTGTTGCTGGGATACCTTAGGCAGGCAATGAG  200

seq1  ATGGGAACAAAGATGTTTTAAATTTGTTTTATATTTATTTATTTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACAAAGATGTTTTAAATTTGTTTTATATTTATTTATTTGGAGAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAA  300

seq1  TAATCTCTCTCCTTATCGCATGAGTTCTGGGACTGGAACTCATCAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTCTCCTTATCGCATGAGTTCTGGGACTGGAACTCATCAACTTG  350

seq1  GCAGAAAACTCCCTTGTTCACCAAGCCATGGCCTGAGTAATAATAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACTCCCTTGTTCACCAAGCCATGGCCTGAGTAATAATAATGAA  400

seq1  CAGGGATCATTTATTTTCAAGGTGGAATTGAATGGAGGATAAAGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCATTTATTTTCAAGGTGGAATTGAATGGAGGATAAAGATTTTA  450

seq1  GATGGGTATGCAGACAGTTTATGGGGTTGCTTCCTTAAATTCCAGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTATGCAGACAGTTTATGGGGTTGCTTCCTTAAATTCCAGGAGCA  500

seq1  AGCACTTGGAAAAGGCAATCTAAAGTCTAGTTAGCACTAAGACTCATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGAAAAGGCAATCTAAAGTCTAGTTAGCACTAAGACTCATAGC  550

seq1  AACAGGGAAACAGTTGGGCAAAGCCACACAAGAATTCTATGGAGGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAAACAGTTGGGCAAAGCCACACAAGAATTCTATGGAGGCAGAT  600

seq1  GAAGTGTCTTTCTGACTCAAATCCAATCTTCAAAAACTCTTCTGTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCTTTCTGACTCAAATCCAATCTTCAAAAACTCTTCTGTGTTAT  650

seq1  TAAGGCTTTCCAAGGTCACAAGCAAGGC  678
      ||||||||||||||||||||||||||||
seq2  TAAGGCTTTCCAAGGTCACAAGCAAGGC  678

seq1: chr5_91260614_91261794
seq2: B6Ng01-025I03.g_67_1247 (reverse)

seq1  CGCTGACTCTGTGGAAATACAACCACTGTTGGCATGGTGCAAGTGTAAAT  50
      ||||||||||   ||| |||||||||||| ||||||| ||||||||||||
seq2  CGCTGACTCTTGAGAATTACAACCACTGTGGGCATGG-GCAAGTGTAAAT  49

seq1  GT-CCGGTCATTGTCTGAGGCTGGCATGTAATTTCCAT-ACACGTTAGGA  98
      || ||||||| ||| ||||||| ||||||| || |||| |||   |||||
seq2  GTCCCGGTCA-TGTTTGAGGCT-GCATGTATTTACCATAACAACGTAGGA  97

seq1  AAACCCACTAGGGTCAAACGGCAGTCATTAAGCTGCA-TGTAAGCC-ATA  146
      || ||  |||||||| ||||||||||||||||||||| |||||||| |||
seq2  AAGCCACCTAGGGTC-AACGGCAGTCATTAAGCTGCATTGTAAGCCAATA  146

seq1  GTAACACGTTCCTCAGAACACACTGGGCCTTATTTCAAGCAGTAGTTGCT  196
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GTAACACGTT-CTCAGAACACACTGGGCCTTA-TTCAAGCAGTAGTTGCT  194

seq1  G-AGATTTCATTTTTTCAGTTCCTCTCAGAAGAGCCTGGCTTGG-ATACA  244
      | |||||||||||||| |||||||| ||||| |||||||||||| |||||
seq2  GAAGATTTCATTTTTT-AGTTCCTCCCAGAAAAGCCTGGCTTGGAATACA  243

seq1  TAAGGTGGTTGTTGCATTTTTACTTTCACAAACTCTGGAAGTCTGGTGGA  294
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAGGTGGTTGTTGCA-TTTTACTTTCACAAACTCTGGAAGTCTGGTGGA  292

seq1  ACCTTTGAGCAAAAGCAGCACCATGTGCATTTGGAGGTAAATGGGAGCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGCAAAAGCAGCACCATGTGCATTTGGAGGTAAATGGGAGCCA  342

seq1  GGGGTATCTTAGATAAGCGTTCTC-AAAATGAGGTCTGGGGTCCCAGGAG  393
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGTATCTTAGATAAGCGTTCTCAAAAATGAGGTCTGGGGTCCCAGGAG  392

seq1  ATGCC-AAGACACCTTCAGAGCATCTATGAGGCCGAAAGAGTCTCATAAC  442
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGACACCTTCAGAGCATCTATGAGGCCGAAAGAGTCTCATAAC  442

seq1  TCTGTGAAGATGTTTTCCTGGCTCACCACAGGAGTGCTCCAGTGGTATCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGATGTTTTCCTGGCTCACCACAGGAGTGCTCCAGTGGTATCA  492

seq1  TGTGTGAAGATGTCAGTGTCTTAGAAGCTAGTAGAAAATTTTCCAGTCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAGATGTCAGTGTCTTAGAAGCTAGTAGAAAATTTTCCAGTCTT  542

seq1  AATTTGTCATTCAGTAAATATAAATGCAGATAGCCTACGTTCTGAAAGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCATTCAGTAAATATAAATGCAGATAGCCTACGTTCTGAAAGTG  592

seq1  GGGTTCTAGGGTCCCTTGGTTAGTTTTAAAAATTCAAAGTCACTTTGAGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAGGGTCCCTTGGTTAGTTTTAAAAATTCAAAGTCACTTTGAGT  642

seq1  TTTGTTTTGTTTTGTTTTGTTTTAAAGCTTGAGAGTGGCCGTGCAGAGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTAAAGCTTGAGAGTGGCCGTGCAGAGCA  692

seq1  AAGTTGTCCAATTAAGTTTATATCAGTGACAGATGGGCTTATCAGACCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCAATTAAGTTTATATCAGTGACAGATGGGCTTATCAGACCTT  742

seq1  CGCTCTCAGACAGTAGCCATGGAACACTTAGCTGCTGCCTCCCGAAAGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCAGACAGTAGCCATGGAACACTTAGCTGCTGCCTCCCGAAAGTG  792

seq1  CAAGCAGACCAGTTCAGGATCTGAAGCTTTGTTTTGGTTTGACTTAAATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGACCAGTTCAGGATCTGAAGCTTTGTTTTGGTTTGACTTAAATG  842

seq1  TAAGTGCAAACAGTCGCTGTGGGGTGTGTGTGTGTGTGTGTGTGTGATAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCAAACAGTCGCTGTGGGGTGTGTGTGTGTGTGTGTGTGTGATAC  892

seq1  TGGCCGATGCAGGCTGAGAGTAGGGGTGTCTCACTCCTGACTGCGTACTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGATGCAGGCTGAGAGTAGGGGTGTCTCACTCCTGACTGCGTACTC  942

seq1  CCCCTCTGTTTTACACAGGCTTATTTACTGTTACACGGAGACTTTTCTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGTTTTACACAGGCTTATTTACTGTTACACGGAGACTTTTCTTC  992

seq1  GAACTGTTAAACTCTTGGCTGAGTTTGTGTGGAGTATGAGGCAAATCTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTAAACTCTTGGCTGAGTTTGTGTGGAGTATGAGGCAAATCTCT  1042

seq1  AACCGCAAGCATGCAGTGGAAAGATTAGGCATACTTTTGAAACGAGTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCAAGCATGCAGTGGAAAGATTAGGCATACTTTTGAAACGAGTTTG  1092

seq1  TGTACCAGATCATATTCTTGGCTCAAGAAAGAAAAAGAAAGGGGGCTGGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGATCATATTCTTGGCTCAAGAAAGAAAAAGAAAGGGGGCTGGG  1142

seq1  GAAAGGCTTGTGGTTGCTACTCTGGGAACTAAAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGTGGTTGCTACTCTGGGAACTAAAGAATTC  1181