BAC Information

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BAC

Clone NameB6Ng01-025N07
Chromosome5 (Build37)
Map Location 116,036,143 - 116,037,225
singlet/doubletsinglet
Overlap geneGcn1l1
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp
Downstream geneLOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N07.bB6Ng01-025N07.g
ACCDH857053DH857054
length1,2471,080
definitionDH857053|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N07, 5' end.DH857054|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctttagatctgtaccccattctaaattgggttatttgggggtt
tgatatctagtttcttgaattcttagttttggatattccacatctgatag
aattggctataaaaagttatactgttctgtaggctgctgttttgtcctat
tgacttacggaagcttttcagtttcatgaggtcctatttattaattgttg
attttagtccctgtactcttgatattctgttcagaaagtcatttcgtgtg
ccaatacattcaagcttattacccactttttcttctatcaggttcagtgt
atctggttttatgttgaggtcttctatccacatggacttgagttttatgg
aggttgataaatatggatctgtttgcattgttttctgtgcatatattgca
gtttggctagcaccatctgtgcaaagagttaatgccagtactcctccact
tattctacaaaatagaaggaacattgcccaatttattttatgagaccaca
gttaccctgatacccaaaccacatagagactgaacaaagaattgcagacc
aatttcccttatgaacatagatgcagaaatactcaacaaaatgcttgcaa
accgaatccaagaacacatcaaaaacatcattcattatgatcaagtaggc
ttcatcccagggatgcaggaatggttcagtattctaaaatccatcaatgt
aatctaccagacagacacactgaaaaaaaaaaaaaaaaaccacatgctga
aaaggcctttgacaaaatccagcactcctttatgataaaagtctttcaga
gatcagggatatgggcacatacctaaacataataaaggcaatctacagca
agcctagagccaacatcaaattaattggagaaaactcaaaacaattccac
taaaattaggaacagacaaggttgtctactctcatattcatatatacttg
agttcaactagagcatagacactgaaggagatcaagggatacgattggaa
caatgagtaagttcattatttgcaatgattgatagtatcatagtgcctta
aattttacagggactcctacgctgataagcatttcagcaagtgctgatca
gattataacacaacaaaaataaaaacctctgaagttctagttaacagatg
acaatggatggacaactggaaacaaccttcacgctgaatctgaatgtctc
acagggaaacctgtaataaccagtttgtgagacatgatcgtgaatat
gaattcattcctgtgggcgagtcaggctcagtagaagcgggggcttggga
gggctgtagagacaggggtgccgcgtgcgtgtgcggggagctaccgtgtc
agctgtaattacaactgcatgggtaattggtgctgtctggtgttgttagc
cgagtgccagtggaactgtgggaactcttctcccccaccgggcgacacgg
aaactactggtttctaccctagcagaaaaggaacaatgatctccaaatgt
atgcgcaaaattctaggttgcctcacaggagtctgctgctaattagggat
ttgaaaagtcttttgactcacgaatcacaacatcctattaatgagctaca
actcttagtcactttgtggcttacatttttttatagttagcttttgatta
agagcgacgttcctatagttcaaagacacggtgggagggaatccgcactg
aaatctcactgggatttgctgctctgggtccttgaagttacacatgtgta
gccctccgtccaagcacagctgtgtgtcaccaccatgcttcccaggctgg
gaatcagtcccttgtccccagactacaagtccaagccactgacccgctca
cccagcttgcttacacttctcctccccttctcttctcttcttttctttta
ttttttttggtttttgagactgggtttctctgtgtagcttcaaagctcca
cctgcccctgcccctgtcccctgagtgctgggttaaaagtgtcatcatca
ccactgcccagctgtgtctctttttttaaagtttatttcgtgtgtgagtt
tttgctttcatgtatgtctgcacctggtactcttgcagggtcagctggag
ttagggatggatgtgagccactgtgagggtatgggaatccagcctgggtc
tttcccaagagcaacagtgttgttaaccactgagcagtctcccaggcagc
gctcttttttttttttttctcagagacagttttattgttatagcctaggc
tagcctaaatttctcatctccttgcttaaacctttcaaatactagggtat
aggtatgtactacctacccactcataggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116036143_116037225
seq2: B6Ng01-025N07.g_67_1146

seq1  GAATTCATTCCTGTGGGCGAGTCAGGCTCAGTAGAAGCGGGGGCTTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTGTGGGCGAGTCAGGCTCAGTAGAAGCGGGGGCTTGGGA  50

seq1  GGGCTGTAGAGACAGGGGTGCCGCGTGCGTGTGCGGGGAGCTACCGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAGAGACAGGGGTGCCGCGTGCGTGTGCGGGGAGCTACCGTGTC  100

seq1  AGCTGTAATTACAACTGCATGGGTAATTGGTGCTGTCTGGTGTTGTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAATTACAACTGCATGGGTAATTGGTGCTGTCTGGTGTTGTTAGC  150

seq1  CGAGTGCCAGTGGAACTGTGGGAACTCTTCTCCCCCACCGGGCGACACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCCAGTGGAACTGTGGGAACTCTTCTCCCCCACCGGGCGACACGG  200

seq1  AAACTACTGGTTTCTACCCTAGCAGAAAAGGAACAATGATCTCCAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTGGTTTCTACCCTAGCAGAAAAGGAACAATGATCTCCAAATGT  250

seq1  ATGCGCAAAATTCTAGGTTGCCTCACAGGAGTCTGCTGCTAATTAGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCAAAATTCTAGGTTGCCTCACAGGAGTCTGCTGCTAATTAGGGAT  300

seq1  TTGAAAAGTCTTTTGACTCACGAATCACAACATCCTATTAATGAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGTCTTTTGACTCACGAATCACAACATCCTATTAATGAGCTACA  350

seq1  ACTCTTAGTCACTTTGTGGCTTACATTTTTTTATAGTTAGCTTTTGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTCACTTTGTGGCTTACATTTTTTTATAGTTAGCTTTTGATTA  400

seq1  AGAGCGACGTTCCTATAGTTCAAAGACACGGTGGGAGGGAATCCGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGACGTTCCTATAGTTCAAAGACACGGTGGGAGGGAATCCGCACTG  450

seq1  AAATCTCACTGGGATTTGCTGCTCTGGGTCCTTGAAGTTACACATGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACTGGGATTTGCTGCTCTGGGTCCTTGAAGTTACACATGTGTA  500

seq1  GCCCTCCGTCCAAGCACAGCTGTGTGTCACCACCATGCTTCCCAGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCGTCCAAGCACAGCTGTGTGTCACCACCATGCTTCCCAGGCTGG  550

seq1  GAATCAGTCCCTTGTCCCCAGACTACAAGTCCAAGCCACTGACCCGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTCCCTTGTCCCCAGACTACAAGTCCAAGCCACTGACCCGCTCA  600

seq1  CCCAGCTTGCTTACACTTCTCCTCCCCTTCTCTTCTCTTCTTTTCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGCTTACACTTCTCCTCCCCTTCTCTTCTCTTCTTTTCTTTTA  650

seq1  TTTTTTTTGGTTTTTGAGACTGGGTTTCTCTGTGTAGCTTCAAAGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGTTTTTGAGACTGGGTTTCTCTGTGTAGCTTCAAAGCTCCA  700

seq1  CCTGCCCCTGCCCCTGTCCCCTGAGTGCTGGGTTAAAAGTGTCATCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCTGCCCCTGTCCCCTGAGTGCTGGGTTAAAAGTGTCATCATCA  750

seq1  CCACTGCCCAGCTGTGTCTCTTTTTTTAAAGTTTATTTCGTGTGTGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCAGCTGTGTCTCTTTTTTTAAAGTTTATTTCGTGTGTGAGTT  800

seq1  TTTGCTTTCATGTATGTCTGCACCTGGTACTCTTGCAGGGTCAGCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCATGTATGTCTGCACCTGGTACTCTTGCAGGGTCAGCTGGAG  850

seq1  TTAGGGATGGATGTGAGCCACTGTGAGGGTATGGGAATCCAGCCTGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGGATGTGAGCCACTGTGAGGGTATGGGAATCCAGCCTGGGTC  900

seq1  TTTCCCAAGAGCAACAGGTGTTGTTAACCACTGAGCAGTCTCCCAGGCAG  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGAGCAACA-GTGTTGTTAACCACTGAGCAGTCTCCCAGGCAG  949

seq1  CCGCTCTTTTTTTTTTTTTCTTCAGAGACAGTTTTTATTG-TATAGCCTA  999
       ||||||||||||||||||  |||||||||| |||||||| |||||||||
seq2  -CGCTCTTTTTTTTTTTTTTCTCAGAGACAG-TTTTATTGTTATAGCCTA  997

seq1  GGCTAGCCTTAAATTTCTCATCTCCTTGCTTAAACCTTTCAATTACTAGG  1049
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTAGCC-TAAATTTCTCATCTCCTTGCTTAAACCTTTCAAATACTAGG  1046

seq1  GTTATAGGTATGTACTACCTA-CCACTCATAGGTG  1083
      | ||||||||||||||||||| |||||||||||||
seq2  G-TATAGGTATGTACTACCTACCCACTCATAGGTG  1080