BAC Information

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BAC

Clone NameB6Ng01-026D17
Chromosome5 (Build37)
Map Location 16,303,462 - 16,304,704
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026D17.bB6Ng01-026D17.g
ACCDH857337DH857338
length1,2291,174
definitionDH857337|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D17, 5' end.DH857338|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcaaaagtgaggctcttcaagcatattagggaatgtcctagaa
gagaactttgagatcccagcctttcctgtcttctttctctcttctctcct
cttcccctttttctctctgaccatgaagtgagctacctttccttgtcagt
catctctgtgatgccttaaagccattcaggactaacagccatataattaa
ccaataataaactataaccacccaaactccaagcatgttagataaaagaa
agaaagtgtggtgatttaaataggaatggcctacttaggatcatagattt
gaattcttggacaagagggagtaaaactattggacgtatggctttattgg
agtaggtgtggccttattgcaggaagtatgtcattaggggtgggctttga
ggttttacatactcaagccaggtggagtggctttctctcttcccactgcc
tgcctacccagttgtagaactcttggctcattctccagcatcatatcttc
gtccaagtcgccatgtttcccaccatgataacaatggactaaacctctga
acttgtaagccagcctaaattatatgctccctttataagagttactaggg
tcatgttgtctcttcacagcaatagaaatctgattaagaaagagtgttta
gatgttgatagactcatttcaggaatttatcaaactctttctttgagcca
aattcgaataaaatttcagaactgatacttatgaaggaatacaggattat
cggaaatgtcacttagccaacttgcagaatataagaaataaaacagtata
gctcaagggaactaatttaaataatttttatgcagcagaacagaatagaa
gaagcatgtagatacaaagggttgggttaagaattagaaatacagacatg
agtttactagtaaaagaacatacactaaagaatcaaaggcatgatgctta
ccttcaagaaataaacttagaaaagagatagtaaagaaagacttagagta
cataaagggagcaaggcatgatgtcacagcaccataaaattaatattcct
caaggagaaagcaggggagttattaatttaaggcaaccaggctacttaag
agaaactcttttttaaaaataagaaggaatgaaagaaaggaagaaatagg
acaagggaataaaagtataagaagcagcgtggtgggccctgcccttatcc
tcgcactcggggaagaagagcaggcagat
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgtgc
cggtcccgagttttcttgtattttttcgtcccggattttttctcgtcccg
gatttcagcaccaattcttaatagcgttctcacgcccggccaggaaagac
gcaacaaaccaaaatcttctgcggcaaaactttattgcttacatctttgg
gagccaggagggcaagcgcccagcgcccagccccaaaaacgaaagcccct
tcaataatgaaaccgaaaccccttccctatttaggagagttatatttcgc
ctaggacgcatcactccctgattggctgcagcccatggccgagctgacgt
tcacgggaaaggtagagtacaagtagtcataaaatacccttggctcatgc
gcagattatttgtttaccacttagaacacaggatgtcagcgccatcttgt
gacggcgaatgtgggggcggctcccaacacataacctctctgtggagatc
aagaaaggaccttggcagactttttgtgcctctgagtggccaacttttga
cattgactggccaccagagggaacttttgacttgactaagccattatctt
tcaggaaggaccaagattgtaccctgaccaacagccatacattacagtaa
tggcaagacctggcccagaagccaggctcccgtgtccttgccttccaaaa
actcatggaagagaaaaagaaaaaaataaacagtatcagttggtctttgg
agccctgtacctatagttaggagtctagtgtggatggagaagccctgcta
ggagctgattgtaaatgctgctcttaaagggaccagcagctctcaggtct
atggtaaggaactgatggctgtttttctaaaaaaaaatctctggtgctta
tgattatggattcatcagtggacaggtgctccccctcttggaataaagct
tagaaaattaagaattttgttctttttaatagcaaaggaatgtagtcatt
tcattttgttctggatagccttaaaggataaaaatattatatgtctggtc
atagcattggctcctaggattggttgataaatatacatggaccaagttgg
cttaacggacctgtgtggggatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16303462_16304704
seq2: B6Ng01-026D17.b_49_1277 (reverse)

seq1  ATCTGCCTGCCTCTGTCT--CCCGAGTGCTGGGATTAAGGGCATGCGCCA  48
      ||||||||| |||| |||  |||||||||  ||| |||||||| |  |||
seq2  ATCTGCCTG-CTCT-TCTTCCCCGAGTGCGAGGA-TAAGGGCAGGGCCCA  47

seq1  CCACGCCTGGCTCTCTTATCTTCTAATTCCCCTTGTCCTATTTCTTTCCT  98
      ||||||   ||| ||||||  | | ||| ||||||||||||||| |||||
seq2  CCACGC--TGCT-TCTTATACTTTTATT-CCCTTGTCCTATTTC-TTCCT  92

seq1  TCTCTTCTATTCCCTTCCTTATTTTTTAAAAAAGAGATTCTCTCTAAGTA  148
      | ||||  |||||  | |||| |||||||||||||| |||||| ||||||
seq2  T-TCTTTCATTCC--TTCTTA-TTTTTAAAAAAGAGTTTCTCT-TAAGTA  137

seq1  GCCTGTGTTGCCCTTAAATTAATAAGCTCCCTGCTTTCT-CTTGGGGAAT  197
      ||||| |||| ||||||||||||||   ||||||||||| |||| |||||
seq2  GCCTG-GTTG-CCTTAAATTAATAACTCCCCTGCTTTCTCCTTGAGGAAT  185

seq1  ATTAATATTATGGTGCTGTGACATCATGCCTTGCTCCCTTTATGTACTCT  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTATGGTGCTGTGACATCATGCCTTGCTCCCTTTATGTACTCT  235

seq1  AAGTCTTTCTTTACTATCTTCTATTTCTAAGTTTATTTCTTGAAGGTAAG  297
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  AAGTCTTTCTTTACTATC-TCT-TTTCTAAGTTTATTTCTTGAAGGTAAG  283

seq1  CATCATGCCTTTGATTCTTTAGTGTATGTTCTTTTACTAGTAAACTCATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCTTTGATTCTTTAGTGTATGTTCTTTTACTAGTAAACTCATG  333

seq1  TCTGTATTTCTAATTCTTAACCCAACCCTTTGTATCTACATGCTTCTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTCTAATTCTTAACCCAACCCTTTGTATCTACATGCTTCTTCT  383

seq1  ATTCTGTTCTGCTGCATAAAAATTATTTAAATTAGTTCCCTTGAGCTATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCTGCTGCATAAAAATTATTTAAATTAGTTCCCTTGAGCTATA  433

seq1  CTGTTTTATTTCTTATATTCTGCAAGTTGGCTAAGTGACATTTCCGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATTTCTTATATTCTGCAAGTTGGCTAAGTGACATTTCCGATAA  483

seq1  TCCTGTATTCCTTCATAAGTATCAGTTCTGAAATTTTATTCGAATTTGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATTCCTTCATAAGTATCAGTTCTGAAATTTTATTCGAATTTGGC  533

seq1  TCAAAGAAAGAGTTTGATAAATTCCTGAAATGAGTCTATCAACATCTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAGAGTTTGATAAATTCCTGAAATGAGTCTATCAACATCTAAA  583

seq1  CACTCTTTCTTAATCAGATTTCTATTGCTGTGAAGAGACAACATGACCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTCTTAATCAGATTTCTATTGCTGTGAAGAGACAACATGACCCT  633

seq1  AGTAACTCTTATAAAGGGAGCATATAATTTAGGCTGGCTTACAAGTTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCTTATAAAGGGAGCATATAATTTAGGCTGGCTTACAAGTTCAG  683

seq1  AGGTTTAGTCCATTGTTATCATGGTGGGAAACATGGCGACTTGGACGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGTCCATTGTTATCATGGTGGGAAACATGGCGACTTGGACGAAG  733

seq1  ATATGATGCTGGAGAATGAGCCAAGAGTTCTACAACTGGGTAGGCAGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGCTGGAGAATGAGCCAAGAGTTCTACAACTGGGTAGGCAGGCA  783

seq1  GTGGGAAGAGAGAAAGCCACTCCACCTGGCTTGAGTATGTAAAACCTCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGAGAGAAAGCCACTCCACCTGGCTTGAGTATGTAAAACCTCAA  833

seq1  AGCCCACCCCTAATGACATACTTCCTGCAATAAGGCCACACCTACTCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCCCTAATGACATACTTCCTGCAATAAGGCCACACCTACTCCAA  883

seq1  TAAAGCCATACGTCCAATAGTTTTACTCCCTCTTGTCCAAGAATTCAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCATACGTCCAATAGTTTTACTCCCTCTTGTCCAAGAATTCAAAT  933

seq1  CTATGATCCTAAGTAGGCCATTCCTATTTAAATCACCACACTTTCTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATCCTAAGTAGGCCATTCCTATTTAAATCACCACACTTTCTTTCT  983

seq1  TTTATCTAACATGCTTGGAGTTTGGGTGGTTATAGTTTATTATTGGTTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAACATGCTTGGAGTTTGGGTGGTTATAGTTTATTATTGGTTAA  1033

seq1  TTATATGGCTGTTAGTCCTGAATGGCTTTAAGGCATCACAGAGATGACTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCTGTTAGTCCTGAATGGCTTTAAGGCATCACAGAGATGACTG  1083

seq1  ACAAGGAAAGGTAGCTCACTTCATGGTCAGAGAGAAAAAGGGGAAGAGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAGGTAGCTCACTTCATGGTCAGAGAGAAAAAGGGGAAGAGGA  1133

seq1  GAGAAGAGAGAAAGAAGACAGGAAAGGCTGGGATCTCAAAGTTCTCTTCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAGAAAGAAGACAGGAAAGGCTGGGATCTCAAAGTTCTCTTCT  1183

seq1  AGGACATTCCCTAATATGCTTGAAGAGCCTCACTTTTGATGAATTC  1243
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTCCCTAATATGCTTGAAGAGCCTCACTTTTGATGAATTC  1229