BAC Information

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BAC

Clone NameB6Ng01-026F20
Chromosome5 (Build37)
Map Location 19,804,398 - 19,948,563
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F20.bB6Ng01-026F20.g
ACCDH857431DH857432
length1,062865
definitionDH857431|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F20, 5' end.DH857432|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,804,398 - 19,805,464)(19,947,698 - 19,948,563)
sequence
gaattccacacgtgaagcctcttccacacaatccttccaccacatcctca
ctggtgctttccctgtcgcactggctgttaaaggaagcactaaaatctct
catagattactctaattaacttctctcaccctgtttttgattatgaaatc
aagatgttggacatattaaaatgcataattgtggttattttcatccatct
gttaactacaaaatattcctaattgcaagtaactctctttgttttaaagt
cttgtctgttttctactattagttttcttgtgtttttttaatattatagc
ttacatttaatctgccttaacataaaaagataaacagcatatattggatc
atctttttaattcatctttatagtattggccttttcactgacatatccag
ctcctctacctttaatataattagtgaggtgtgggaacagacccactgtt
tcgttattctttctgtttcccactatgtttccagttctttctctcctcca
ctctggtgcgctcacgttttgactcctctgttgaattgttagctctacaa
gtcaacacttaatgttggtgcttagtgtgctgtcttcaggataatattta
cacatagtcattataatctacagttgctgctgtaactacacataaagtgt
aagaacctccacatatagagattcactttctatgtcctatgtttcctccc
atatatccatgaacacttaaagtctatccattcctattttttatatttat
atcgtacttatattcgtgactttgactactttcacagtttctacattttc
tcttcagtgttaaccttagggggtgtttgatttatcctgctttgagttaa
gcgccttcttgagtcttatttttaaaccatttagaggtattctttctttc
cttgatttctagaaattcaccagcatgcactagattagtttatatttctt
gcaggcattggggttctgtcattcactagagtcatttttttattcattat
gatgatacttaatgcatgagctgtttcaaagtccttttgtactcatttca
tagaccaccatc
gaattcagaaagcaagaagctatgggcagaggcagaacagaccaaggtgt
ttataaggtggggagtcttgtatataatggggaccttgtgttctgtggag
aggaaggtatctgtgggggcaggggaggaaaatggagcaggtggctctac
agttggggttgggtctgccataattactaggctttgtgaaaactatgaga
aatacatttcagtattcaaaaacccatattatggtcattaaaaagaacca
gcctaaatgagtttcaataaataaaagaagtcacctaaattgtaccgtta
ccatttataaggatgtaaggcaggttataatgtagactacagatatgtaa
tttcttcccgtaaccaaatgtcaggctagaagagtagactttggcacagt
agtggtcattttaacatggtctttcctttcacaggtgctgactgtataag
aagtgagcctgttttaaagcagagtggatgcaatgactactcgacaactc
tgataggttcgctgtgaaacaaacccctatcggctaccgttctgtttttg
cattcgagggatttaagttttgcagtctgaaataccttcctctccaggag
tgctctagtcttcacggaaccactcagctgtcacttaggcaagagagaag
ctacttacactgacactttcatcttaccgttcctgaaacaagtgtgcacg
gacccaggagtgtttgacttcagtatgagcatatcgcacagtgtgaactg
cccccccccccactccgacagcagagaaggaaacacagttatgtgtgcac
ctccagccacatattttctcactgttcgagatgggtgattttactgggaa
ttcttctccaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19804398_19805464
seq2: B6Ng01-026F20.b_42_1103

seq1  GAATTCCACACGTGAAGCCTCTTCCACACAATCCTTCCACCACATCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACGTGAAGCCTCTTCCACACAATCCTTCCACCACATCCTCA  50

seq1  CTGGTGCTTTCCCTGTCGCACTGGCTGTTAAAGGAAGCACTAAAATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTTTCCCTGTCGCACTGGCTGTTAAAGGAAGCACTAAAATCTCT  100

seq1  CATAGATTACTCTAATTAACTTCTCTCACCCTGTTTTTGATTATGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTACTCTAATTAACTTCTCTCACCCTGTTTTTGATTATGAAATC  150

seq1  AAGATGTTGGACATATTAAAATGCATAATTGTGGTTATTTTCATCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGGACATATTAAAATGCATAATTGTGGTTATTTTCATCCATCT  200

seq1  GTTAACTACAAAATATTCCTAATTGCAAGTAACTCTCTTTGTTTTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTACAAAATATTCCTAATTGCAAGTAACTCTCTTTGTTTTAAAGT  250

seq1  CTTGTCTGTTTTCTACTATTAGTTTTCTTGTGTTTTTTTAATATTATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTTTTCTACTATTAGTTTTCTTGTGTTTTTTTAATATTATAGC  300

seq1  TTACATTTAATCTGCCTTAACATAAAAAGATAAACAGCATATATTGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTAATCTGCCTTAACATAAAAAGATAAACAGCATATATTGGATC  350

seq1  ATCTTTTTAATTCATCTTTATAGTATTGGCCTTTTCACTGACATATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTAATTCATCTTTATAGTATTGGCCTTTTCACTGACATATCCAG  400

seq1  CTCCTCTACCTTTAATATAATTAGTGAGGTGTGGGAACAGACCCACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACCTTTAATATAATTAGTGAGGTGTGGGAACAGACCCACTGTT  450

seq1  TCGTTATTCTTTCTGTTTCCCACTATGTTTCCAGTTCTTTCTCTCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATTCTTTCTGTTTCCCACTATGTTTCCAGTTCTTTCTCTCCTCCA  500

seq1  CTCTGGTGCGCTCACGTTTTGACTCCTCTGTTGAATTGTTAGCTCTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGCGCTCACGTTTTGACTCCTCTGTTGAATTGTTAGCTCTACAA  550

seq1  GTCAACACTTAATGTTGGTGCTTAGTGTGCTGTCTTCAGGATAATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACACTTAATGTTGGTGCTTAGTGTGCTGTCTTCAGGATAATATTTA  600

seq1  CACATAGTCATTATAATCTACAGTTGCTGCTGTAACTACACATAAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTCATTATAATCTACAGTTGCTGCTGTAACTACACATAAAGTGT  650

seq1  AAGAACCTCCACATATAGAGATTCACTTTCTATGTCCTATGTTTCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCCACATATAGAGATTCACTTTCTATGTCCTATGTTTCCTCCC  700

seq1  ATATATCCATGAACACTTAAAGTCTATCCATTCCTATTTTTTATATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATGAACACTTAAAGTCTATCCATTCCTATTTTTTATATTTAT  750

seq1  ATCGTACTTATATTCGTGACTTTGACTACTTTCACAGTTTCTACATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTACTTATATTCGTGACTTTGACTACTTTCACAGTTTCTACATTTTC  800

seq1  TCTTCAGTGTTAACCTTAGGGGGTGTTTGATTTATCCTGCTTTGAGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTGTTAACCTTAGGGGGTGTTTGATTTATCCTGCTTTGAGTTAA  850

seq1  GCGCCTTCTTGAGTCTTATTTTTTAAACCATTTAGAGGTATTCTTTCTTT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCGCCTTCTTGAGTCTTA-TTTTTAAACCATTTAGAGGTATTCTTTCTTT  899

seq1  CCTTGATTTCTAGAAATTCACCAGCATGCACTAGATTAGTTTATATTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTTCTAGAAATTCACCAGCATGCACTAGATTAGTTTATATTTCT  949

seq1  TGCAGGCCATTGGGGTTCTGTTCATTCACTAGAGTCATTTTTTTATTCAT  1000
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCAGG-CATTGGGGTTCTG-TCATTCACTAGAGTCATTTTTTTATTCAT  997

seq1  TATGATGATACTTAATGCATTGAGCTGTTTCAAAGTCCTTTTGTACTCAT  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TATGATGATACTTAATGCA-TGAGCTGTTTCAAAGTCCTTTTGTACTCA-  1045

seq1  TTTCATAGACCACCATC  1067
      |||||||||||||||||
seq2  TTTCATAGACCACCATC  1062

seq1: chr5_19947698_19948563
seq2: B6Ng01-026F20.g_67_931 (reverse)

seq1  TCTCTTGGGAGAAGAATTCCCAGTAAAATCATCCATCTCGAACAGTGAGA  50
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTCTT-GGAGAAGAATTCCCAGTAAAATCACCCATCTCGAACAGTGAGA  49

seq1  AAATATGTGGCTGGAGGTGCACACATAACTGTGTTTCCTTCTCTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGGCTGGAGGTGCACACATAACTGTGTTTCCTTCTCTGCTGTC  99

seq1  GGAGTGGGGGGGGGGGCAGTTCACACTGTGCGATATGCTCATACTGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGGGGGGGGGCAGTTCACACTGTGCGATATGCTCATACTGAAGT  149

seq1  CAAACACTCCTGGGTCCGTGCACACTTGTTTCAGGAACGGTAAGATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTCCTGGGTCCGTGCACACTTGTTTCAGGAACGGTAAGATGAAA  199

seq1  GTGTCAGTGTAAGTAGCTTCTCTCTTGCCTAAGTGACAGCTGAGTGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTGTAAGTAGCTTCTCTCTTGCCTAAGTGACAGCTGAGTGGTTC  249

seq1  CGTGAAGACTAGAGCACTCCTGGAGAGGAAGGTATTTCAGACTGCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGACTAGAGCACTCCTGGAGAGGAAGGTATTTCAGACTGCAAAAC  299

seq1  TTAAATCCCTCGAATGCAAAAACAGAACGGTAGCCGATAGGGGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCCTCGAATGCAAAAACAGAACGGTAGCCGATAGGGGTTTGTTT  349

seq1  CACAGCGAACCTATCAGAGTTGTCGAGTAGTCATTGCATCCACTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGAACCTATCAGAGTTGTCGAGTAGTCATTGCATCCACTCTGCTT  399

seq1  TAAAACAGGCTCACTTCTTATACAGTCAGCACCTGTGAAAGGAAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGGCTCACTTCTTATACAGTCAGCACCTGTGAAAGGAAAGACCA  449

seq1  TGTTAAAATGACCACTACTGTGCCAAAGTCTACTCTTCTAGCCTGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAATGACCACTACTGTGCCAAAGTCTACTCTTCTAGCCTGACATT  499

seq1  TGGTTACGGGAAGAAATTACATATCTGTAGTCTACATTATAACCTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACGGGAAGAAATTACATATCTGTAGTCTACATTATAACCTGCCTT  549

seq1  ACATCCTTATAAATGGTAACGGTACAATTTAGGTGACTTCTTTTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTATAAATGGTAACGGTACAATTTAGGTGACTTCTTTTATTTAT  599

seq1  TGAAACTCATTTAGGCTGGTTCTTTTTAATGACCATAATATGGGTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCATTTAGGCTGGTTCTTTTTAATGACCATAATATGGGTTTTTG  649

seq1  AATACTGAAATGTATTTCTCATAGTTTTCACAAAGCCTAGTAATTATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAAATGTATTTCTCATAGTTTTCACAAAGCCTAGTAATTATGGC  699

seq1  AGACCCAACCCCAACTGTAGAGCCACCTGCTCCATTTTCCTCCCCTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAACCCCAACTGTAGAGCCACCTGCTCCATTTTCCTCCCCTGCCC  749

seq1  CCACAGATACCTTCCTCTCCACAGAACACAAGGTCCCCATTATATACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATACCTTCCTCTCCACAGAACACAAGGTCCCCATTATATACAAG  799

seq1  ACTCCCCACCTTATAAACACCTTGGTCTGTTCTGCCTCTGCCCATAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCACCTTATAAACACCTTGGTCTGTTCTGCCTCTGCCCATAGCTT  849

seq1  CTTGCTTTCTGAATTC  866
      ||||||||||||||||
seq2  CTTGCTTTCTGAATTC  865