BAC Information

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BAC

Clone NameB6Ng01-026J21
Chromosome5 (Build37)
Map Location 17,501,274 - 17,633,940
singlet/doubletdoublet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J21.bB6Ng01-026J21.g
ACCDH857609DH857610
length1,095905
definitionDH857609|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J21, 5' end.DH857610|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,501,274 - 17,502,370)(17,633,036 - 17,633,940)
sequence
gaattctcaacagctgtcaatattcaaagactgaaagtttagtagcaaca
gcatttgacatttttaattacttctcaaacagacatgcaagtcttctatt
ccgggatctgatatatctttttctctcttatttggaaatgtgattgcatg
gttcagaatgaattcaacaagattctaagtctgcccaaggcacataataa
caatgaagaatcattgtctcatttgtaaagaaacacttagcactaggaag
gttgagaatcactgctttgggctacatggcgtcgaaaatgacctgtgacc
tttcaataccattcctcatgccatggggatcccccccaagcataaaattc
ttttcattgctacttcttctctataattttgctattgttatgacttagaa
tgtaaatgcctgtttctgattgtcttgggaactcctgtgaaccctaaagc
gcagtaatcctcagggtttatttaaaatgaaattatagaggagtaaaaag
cccttagtttttctagaattagcatatttgttactttggtttgcttgttc
aacaatattttagcaacacgtattttgttgctcatcagagtgtataaatg
aactaaaccacaaaagtctttgccattgtatacctatacactaaaaaaac
caataaagtaagaaggggaaaggcacttgaataaattctatgagtaacat
gaaacaggggaaagtgtactttgagagtgctagaagaataaaaaggtaga
gtaagattccttaagaatggttcaatcaaagggtccagggacacacaaga
acatgacccacattgtcaactgactagggacgcagacttgcagaaatcac
ggagactatatgggtctgacataagtcctctactatgttgtgactgaata
gctaggaattcttgtaagattcctaacagtgggagcaggggctgtctctg
accctttggactacttctgaggaccctattcttcctactgggttgccttg
tccagccttgatgtgacggtatgtgcctactcttatgtagcttgtttgag
tgtcctgggagatgatctcctttttgagggaagcaaaatggggag
gaattcagcctttctaacatccttataaacactgattattgttacattgg
cttgtaacgattttaatgcttatgaagtgatatttgttgtggcttcagat
tgcattctcctagtgatattggccatgtgtccttgcagatttcattatta
taatgtaagattgtcatttttatattcagttttttgtcaagtactagttg
tctcattcctatcaatcatttatgtgtttagaacttggggagtttgagag
gttcttttactatgtgttttccttcccttttagagttggaggctcagagg
acagagctaagagccagagagaaatattcacagtctacagcccaatgatc
tttactcagatggcttttgaggaaactacaattcagagaggtcacattcc
tgtgtggacagaagaagagtctgctcagatatttcaaatctaacacattt
gaccacccttgagatatgtgatgagtcatataacatgtctctgcctaaag
gaaatatattaatggtgaggagaattagatactatctgaatgtaatatat
tagtgggaaacttttcctttatgaagaatattgcctaaggataaaagata
cttaataatagttttagataagatacagaaaaacatttatttcttaaaat
atccactttaataaatcatgatgttaatgcattctaaatgaagatttcat
ctggtaattaagcagatgacatcaaagtagctttttgactgactgactga
ataattataggcataaatattctgttatatatattctgatatatatatgc
ttgtgtgcaaataataagaaattctatgaagaattactaaaatgatatat
tccttatatatgtatatatggtacgtgatatgatatatatggtatatgat
atgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17501274_17502370
seq2: B6Ng01-026J21.b_45_1139

seq1  GAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAGCTGTCAATATTCAAAGACTGAAAGTTTAGTAGCAACA  50

seq1  GCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACATTTTTAATTACTTCTCAAACAGACATGCAAGTCTTCTATT  100

seq1  CCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGATCTGATATATCTTTTTCTCTCTTATTTGGAAATGTGATTGCATG  150

seq1  GTTCAGAATGAATTCAACAAGATTCTAAGTCTGCCCAAGGCACATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATGAATTCAACAAGATTCTAAGTCTGCCCAAGGCACATAATAA  200

seq1  CAATGAAGAATCATTGTCTCATTTGTAAAGAAACACTTAGCACTAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGAATCATTGTCTCATTTGTAAAGAAACACTTAGCACTAGGAAG  250

seq1  GTTGAGAATCACTGCTTTGGGCTACATGGCGTCGAAAATGACCTGTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAATCACTGCTTTGGGCTACATGGCGTCGAAAATGACCTGTGACC  300

seq1  TTTCAATACCATTCCTCATGCCATGGGGATCCCCCCCAAGCATAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATACCATTCCTCATGCCATGGGGATCCCCCCCAAGCATAAAATTC  350

seq1  TTTTCATTGCTACTTCTTCTCTATAATTTTGCTATTGTTATGACTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTGCTACTTCTTCTCTATAATTTTGCTATTGTTATGACTTAGAA  400

seq1  TGTAAATGCCTGTTTCTGATTGTCTTGGGAACTCCTGTGAACCCTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCCTGTTTCTGATTGTCTTGGGAACTCCTGTGAACCCTAAAGC  450

seq1  GCAGTAATCCTCAGGGTTTATTTAAAATGAAATTATAGAGGAGTAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATCCTCAGGGTTTATTTAAAATGAAATTATAGAGGAGTAAAAAG  500

seq1  CCCTTAGTTTTTCTAGAATTAGCATATTTGTTACTTTGGTTTGCTTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGTTTTTCTAGAATTAGCATATTTGTTACTTTGGTTTGCTTGTTC  550

seq1  AACAATATTTTAGCAACACGTATTTTGTTGCTCATCAGAGTGTATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTTAGCAACACGTATTTTGTTGCTCATCAGAGTGTATAAATG  600

seq1  AACTAAACCACAAAAGTCTTTGCCATTGTATACCTATACACTAAAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACCACAAAAGTCTTTGCCATTGTATACCTATACACTAAAAAAAC  650

seq1  CAATAAAGTAAGAAGGGGAAAGGCACTTGAATAAATTCTATGAGTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTAAGAAGGGGAAAGGCACTTGAATAAATTCTATGAGTAACAT  700

seq1  GAAACAGGGGAAAGTGTACTTTGAGAGTGCTAGAAGAATAAAAAGGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGGGAAAGTGTACTTTGAGAGTGCTAGAAGAATAAAAAGGTAGA  750

seq1  GTAAGATTCCTTAAGAATGGTTCAATCAAAGGGTCCAGGGACACACAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTCCTTAAGAATGGTTCAATCAAAGGGTCCAGGGACACACAAGA  800

seq1  ACATGACCCACATTGTCAACTGACTAGGGACGCAGACTTGCAGAAATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATGACCCACATTGTCAACTGACTAGGGACGCAGACTTGCAGAAATCAC  850

seq1  GGAGACTATATGGGTCTGACATAAGTCCTCTACTATGTTGTGACTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTATATGGGTCTGACATAAGTCCTCTACTATGTTGTGACTGAATA  900

seq1  GCTAGGAATTCTTGTAAGATTCCTAACAGTGGGAGCAGGGGCTGTCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATTCTTGTAAGATTCCTAACAGTGGGAGCAGGGGCTGTCTCTG  950

seq1  ACCCTTTGGACTACTTCTGAGGACCCTATTCTTCCTACTGGGTTGCCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGGACTACTTCTGAGGACCCTATTCTTCCTACTGGGTTGCCTTG  1000

seq1  TCCAGCCTTGATGTGACGGTATGTGCCTACTCTTATTGTAGCTTGTTTGA  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCAGCCTTGATGTGACGGTATGTGCCTACTCTTA-TGTAGCTTGTTTGA  1049

seq1  -TGTCCCTGGGAGATGTACTCCTTTTTGAGGGAAGGCAGAGTGGGGAG  1097
       ||| |||||||||||  |||||||||||||||| ||| | |||||||
seq2  GTGT-CCTGGGAGATGATCTCCTTTTTGAGGGAA-GCAAAATGGGGAG  1095

seq1: chr5_17633036_17633940
seq2: B6Ng01-026J21.g_64_968 (reverse)

seq1  ATCATATCATATACCATATATATCATATCACGTACCATATATACATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCATATACCATATATATCATATCACGTACCATATATACATATAT  50

seq1  AAGGAATATATCATTTTAGTAATTCTTCATAGAATTTCTTATTATTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATATATCATTTTAGTAATTCTTCATAGAATTTCTTATTATTTGCA  100

seq1  CACAAGCATATATATATCAGAATATATATAACAGAATATTTATGCCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCATATATATATCAGAATATATATAACAGAATATTTATGCCTATA  150

seq1  ATTATTCAGTCAGTCAGTCAAAAAGCTACTTTGATGTCATCTGCTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGTCAGTCAGTCAAAAAGCTACTTTGATGTCATCTGCTTAATT  200

seq1  ACCAGATGAAATCTTCATTTAGAATGCATTAACATCATGATTTATTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGAAATCTTCATTTAGAATGCATTAACATCATGATTTATTAAAG  250

seq1  TGGATATTTTAAGAAATAAATGTTTTTCTGTATCTTATCTAAAACTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTTAAGAAATAAATGTTTTTCTGTATCTTATCTAAAACTATTA  300

seq1  TTAAGTATCTTTTATCCTTAGGCAATATTCTTCATAAAGGAAAAGTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATCTTTTATCCTTAGGCAATATTCTTCATAAAGGAAAAGTTTCC  350

seq1  CACTAATATATTACATTCAGATAGTATCTAATTCTCCTCACCATTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATATATTACATTCAGATAGTATCTAATTCTCCTCACCATTAATAT  400

seq1  ATTTCCTTTAGGCAGAGACATGTTATATGACTCATCACATATCTCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTAGGCAGAGACATGTTATATGACTCATCACATATCTCAAGGG  450

seq1  TGGTCAAATGTGTTAGATTTGAAATATCTGAGCAGACTCTTCTTCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAATGTGTTAGATTTGAAATATCTGAGCAGACTCTTCTTCTGTCC  500

seq1  ACACAGGAATGTGACCTCTCTGAATTGTAGTTTCCTCAAAAGCCATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAATGTGACCTCTCTGAATTGTAGTTTCCTCAAAAGCCATCTGA  550

seq1  GTAAAGATCATTGGGCTGTAGACTGTGAATATTTCTCTCTGGCTCTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCATTGGGCTGTAGACTGTGAATATTTCTCTCTGGCTCTTAGC  600

seq1  TCTGTCCTCTGAGCCTCCAACTCTAAAAGGGAAGGAAAACACATAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTGAGCCTCCAACTCTAAAAGGGAAGGAAAACACATAGTAAA  650

seq1  AGAACCTCTCAAACTCCCCAAGTTCTAAACACATAAATGATTGATAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTCTCAAACTCCCCAAGTTCTAAACACATAAATGATTGATAGGAA  700

seq1  TGAGACAACTAGTACTTGACAAAAAACTGAATATAAAAATGACAATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAACTAGTACTTGACAAAAAACTGAATATAAAAATGACAATCTTA  750

seq1  CATTATAATAATGAAATCTGCAAGGACACATGGCCAATATCACTAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATAATGAAATCTGCAAGGACACATGGCCAATATCACTAGGAGA  800

seq1  ATGCAATCTGAAGCCACAACAAATATCACTTCATAAGCATTAAAATCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCTGAAGCCACAACAAATATCACTTCATAAGCATTAAAATCGTT  850

seq1  ACAAGCCAATGTAACAATAATCAGTGTTTATAAGGATGTTAGAAAGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAATGTAACAATAATCAGTGTTTATAAGGATGTTAGAAAGGCTG  900

seq1  AATTC  905
      |||||
seq2  AATTC  905