BAC Information

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BAC

Clone NameB6Ng01-026O06
Chromosome5 (Build37)
Map Location 81,044,338 - 81,045,463
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O06.bB6Ng01-026O06.g
ACCDH857790DH857791
length7871,102
definitionDH857790|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O06, 5' end.DH857791|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccaatctgtaggttgccattttgactatgtcctttgcctta
caaaacatttccagtttcatgaggtctcatttatcagtccttgaccttag
tgcatgagctactggagtgctgtgagaatctcaggtctcagagggaagga
tgctagatgaaatgctagacagtagggagagggaacttatagagaccacc
tccagcaggaagacaggacatcaaatgagggagggagttgccattccagt
aaaaattctgacccataattgttcctgtttgaaagaactgcagagataga
aatggagaagagcttgaggaaaagaaagtccagtgtcaggcccaaagtga
gatccagctcaaggtgaggtcccaagggctgacactattactgaggctat
ggagtgctcacaaaaagggatctagcatgatcacactccagaagacccaa
caagcagctgaaagagtcagatgcagatatttgcacgcaacaaatggaca
gaagctgctgacctctgtggttgaattagggaaggctgaaagaagctgag
gaggagtgcaactctgtaggaggaccagcagtctcaattaatctggaccc
cttagatctctcaaacactgggccaccaaacaggcaccatatgccagctg
atctgaggcccccaacacacacagagtagaccagtagtgcctggtctgta
ttcaatcagagatgatgcacctaaccctcaagagatgggaggccccaggg
agttcagaggtcaggtggtatgggttgtggggaggga

gaattcaccattacaactttaaacaggtgattaatagtttatataatacg
caaagagtagagctaaaggttaaaatatacgagaagacttaaaaactaca
ggttcaattctaaataggtcacagaagttgatttaatccttaacgacaac
ttgatatgctacatgctaaactcaatacttcaaaaatactgtgatacctg
tacaattttctacatttacacctacaagaaatgtatattgcacatgataa
actaagactatatgttcacgtgacctgttttggtttcagtttccttttct
tttatacaatcatcttcaaaaataattaatactatttggcatagatgcat
tccaaaggatcagtttttgtgatttgccccttggtttacaatagattgag
cagaagggggaccataattcagaaaagaataggtggagttttttaactac
taatagtacatctttagttacattatagactcataaatcagactttgcat
ttgcttcagctttactcctatgccccacagtcacctcaggaaaacttaat
tggtttattacctgtaatcaatttagccattcattagtctacatagaaat
atttattcacaagaagcagtaattagtgaaatcacactgacgagtacaat
tacctatttggtgttcatggatggtgttgtttcatttaacagaaataaac
ataaaacctagagaggcatgaacacacaaaaaggtaaccacatttcaata
atagatgtgtaggagatatgtttaggtgtattattcatgtcactcaactg
aaagtattaatctgccacgtgcatgttatattaggcaaagtgaggtggta
aaaattcaaacctgtatcttgttgctctaaacctatctccatgcttaagc
gtatttttgagtttgaagacttggttcagttctatacatttattgactgg
tcccaacttacataagaaaggatgtttaagatcttttggaattttgtgag
gtatactgtttctaagatggggaatattctctagtaatgcttgaaggctt
gcatggcaatgatttgctctatccgttgtgatctgaaggatcatttttgg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81044338_81045463
seq2: B6Ng01-026O06.g_67_1168

seq1  GAATTCACCATTACAACTTTAAACAGGTGATTAATAGTTTATATAATACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTACAACTTTAAACAGGTGATTAATAGTTTATATAATACG  50

seq1  CAAAGAGTAGAGCTAAAGGTTAAAATATACGAGAAGACTTAAAAACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTAGAGCTAAAGGTTAAAATATACGAGAAGACTTAAAAACTACA  100

seq1  GGTTCAATTCTAAATAGGTCACAGAAGTTGATTTAATCCTTAACGACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTCTAAATAGGTCACAGAAGTTGATTTAATCCTTAACGACAAC  150

seq1  TTGATATGCTACATGCTAAACTCAATACTTCAAAAATACTGTGATACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGCTACATGCTAAACTCAATACTTCAAAAATACTGTGATACCTG  200

seq1  TACAATTTTCTACATTTACACCTACAAGAAATGTATATTGCACATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTTCTACATTTACACCTACAAGAAATGTATATTGCACATGATAA  250

seq1  ACTAAGACTATATGTTCACGTGACCTGTTTTGGTTTCAGTTTCCTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACTATATGTTCACGTGACCTGTTTTGGTTTCAGTTTCCTTTTCT  300

seq1  TTTATACAATCATCTTCAAAAATAATTAATACTATTTGGCATAGATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAATCATCTTCAAAAATAATTAATACTATTTGGCATAGATGCAT  350

seq1  TCCAAAGGATCAGTTTTTGTGATTTGCCCCTTGGTTTACAATAGATTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGATCAGTTTTTGTGATTTGCCCCTTGGTTTACAATAGATTGAG  400

seq1  CAGAAGGGGGACCATAATTCAGAAAAGAATAGGTGGAGTTTTTTAACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGGGACCATAATTCAGAAAAGAATAGGTGGAGTTTTTTAACTAC  450

seq1  TAATAGTACATCTTTAGTTACATTATAGACTCATAAATCAGACTTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTACATCTTTAGTTACATTATAGACTCATAAATCAGACTTTGCAT  500

seq1  TTGCTTCAGCTTTACTCCTATGCCCCACAGTCACCTCAGGAAAACTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGCTTTACTCCTATGCCCCACAGTCACCTCAGGAAAACTTAAT  550

seq1  TGGTTTATTACCTGTAATCAATTTAGCCATTCATTAGTCTACATAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATTACCTGTAATCAATTTAGCCATTCATTAGTCTACATAGAAAT  600

seq1  ATTTATTCACAAGAAGCAGTAATTAGTGAAATCACACTGACGAGTACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCACAAGAAGCAGTAATTAGTGAAATCACACTGACGAGTACAAT  650

seq1  TACCTATTTGGTGTTCATGGATGGTGTTGTTTCATTTAACAGAAATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTTGGTGTTCATGGATGGTGTTGTTTCATTTAACAGAAATAAAC  700

seq1  ATAAAACCTAGAGAGGCATGAACACACAAAAAGGTAACCACATTTCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTAGAGAGGCATGAACACACAAAAAGGTAACCACATTTCAATA  750

seq1  ATAGATGTGTAGGAGATATGTTTAGGTGTATTATTCATGTCACTCAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGTAGGAGATATGTTTAGGTGTATTATTCATGTCACTCAACTG  800

seq1  AAAGTATTAATCTGCCACGTGCATGTTATATTAGGCAAAGTGAGGTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTAATCTGCCACGTGCATGTTATATTAGGCAAAGTGAGGTGGTA  850

seq1  AAAATTTCAAAACCTGTATCTTGTTGCTCTAAACCTATCTCCATGCTTAA  900
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATT--CAAACCTGTATCTTGTTGCTCTAAACCTATCTCCATGCTTAA  898

seq1  GCGGTATTTCTTGAGTTTGAAAGACTTGGTTCAGTTCTATACATATATTG  950
      || |||||| ||||||||| |||||||||||||||||||||||| |||| 
seq2  GC-GTATTT-TTGAGTTTG-AAGACTTGGTTCAGTTCTATACATTTATT-  944

seq1  GACTGGTCCCAAACTTACATAAAGATAGGATGGTTTAGGATCTTTGTGAA  1000
      |||||||||| ||||||||| |||| ||||| ||||| ||||||| || |
seq2  GACTGGTCCC-AACTTACAT-AAGAAAGGAT-GTTTAAGATCTTT-TGGA  990

seq1  ATTCTGTGAGGGTATACTTGTTTCCTAAGGATGTGGGATTGATTCGTCCA  1050
      ||| ||||| ||||||| ||||| |||| |||| || ||  |||| || |
seq2  ATTTTGTGA-GGTATAC-TGTTT-CTAA-GATGGGGAAT--ATTC-TCTA  1033

seq1  -TGATGCTTGAAGGCTTGCATGGCAATGGATTTTTGCCTTTATCCAGTTG  1099
       | |||||||||||||||||||||||| |||||    || ||||| ||||
seq2  GTAATGCTTGAAGGCTTGCATGGCAAT-GATTT---GCTCTATCC-GTTG  1078

seq1  TGATCTTGAAGGTACTATTTTTTGGAA  1126
      ||||| ||||||   |  |||||||||
seq2  TGATC-TGAAGG--ATCATTTTTGGAA  1102


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