BAC Information

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BAC

Clone NameB6Ng01-026O12
Chromosome5 (Build37)
Map Location 7,649,245 - 7,777,896
singlet/doubletdoublet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O12.bB6Ng01-026O12.g
ACCDH857799DH857800
length1,0701,059
definitionDH857799|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O12, 5' end.DH857800|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,776,820 - 7,777,896)(7,649,245 - 7,650,311)
sequence
gaattctctttctctgcctatttcattattgcattattaacttagctaaa
actccattcaattacttattctcttttacctttgggcttgtaattatatt
aaaatcttgcggctacgaatgctgaatgctctcctaatgtcaccagtcta
actttctgctatcaggcaaaaacattttttttttctcctttgaacctttc
tagaagagtagattttatagtttttggaaattcattcagcacttcacttt
tctatgtagtttccttgcatcacttctactgtttcttgagaagggaaaat
aaattactgatcaataacagtcactttgaaaccttctgtgaggaactaga
gggatagatcatttggcaagaacactagatgctcttgtagatggcctagg
ttctgtttctagcacctgcatggtagctcacaaccactccaatattcagt
tcaagggatctgatgccctcttctgattgtcatgggcaccagaaaagcac
atggcacacaccaatacacacaggtcaaacattgatatatataataagat
aaatctaaactctagtgtgagaataactagaagattttgtagctttatag
tctcagaaaactggcaattgagttatgattaagatgctggggaggaccat
aaacctgcaagtcctctaggactggaggtaggcgccctttccgaacttaa
agacgctttggttgccacttcagacctttagcttcaggctttggaatagg
attttctgactttcagtgtacttggctaatcttctggcatatgcacattt
acagacctgaaactggactttggaattcatagaaacactgcgtttcaaat
ctatgccctctatcatttataattatctttattaatttcaatgttttaaa
ttatagtttctctctatttctgagattttatacatatataaataaaatat
gtttacattcactatccaataatgcccctcatctgtaaattcttccaaat
atgtctgccacaactcatgtatctgtgttattgttattttttttcttttt
gttacactcctcagtctaac

gaattccagggtaaaaaaaattatctccctccatcacatacttgatttca
atttgtgattttgtactttgtctcatcaatgcagctgctgaagtaacaca
aagtagtggaggaaagcaggaggttaaacacaagtcggagcaagaggagc
agagagaaagcccagtattattgagccctgcagtaaatggcatgttagaa
agaactgagagtcagccatgctgctgccttgcccactcaccagccttgtt
tttgcttactatttaaatagcataaagtagctatatacacatgctgccaa
agataaaaccgagcctccttgataaagatctgtttacattattttcagct
gttatgtttagaaatgtaaagatggtatgccaacaatatacactcattca
ctaatttatgcaggataagcaacaagcaacagcaattcagtttatcaacc
aagtatgcatctccccgaggaagggaacagaaacacagcaaagtgatgaa
tcatttgcatttatttggaaagttatgctaaactgtctatgattattttc
agtaggaatgaccccaataagtatactgttgtggatgcttgaattcaggc
tacgggatcataacagaggttagactatgtgggaattaatacagtggtgg
ccttgaaatactaggtttagaatagctataggtaggtaactcttgactcc
aaacaagtttagacttagggagcatgagaatttatagacatttgcccact
gatttattcatttgttaagtatgtatgaattcttcctgaataatctactg
aatatttagagaaaaggaccaataaatcttgacctgtttcaaatttactt
cagataaagaaaatgaaaattatgatattgtatagtagaggaaaatagaa
gagatctgaaagaatagaagcagcacccaccgaagcctcacaaaggacac
tgaaagcctgttgatgcacagacaaaaaagacttcacacaaaaagaaact
aactctatgtggtttggtatggtggaaaatatcattaaaatcttggcagt
gctacagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7776820_7777896
seq2: B6Ng01-026O12.b_46_1115 (reverse)

seq1  GTTAGACCTGAGGAGTTGTAACAGAAAGAAAAAAAATAACAATAACACAG  50
      |||||| |||||||| ||||||| ||||||||||||||||||||||||||
seq2  GTTAGA-CTGAGGAG-TGTAACAAAAAGAAAAAAAATAACAATAACACAG  48

seq1  AATACATGAAGTTGTGGCAGACATATTTGGAAGAATTTACAGATGAGGGG  100
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -ATACATG-AGTTGTGGCAGACATATTTGGAAGAATTTACAGATGAGGGG  96

seq1  CATTATTGGATAGTGAATGTAAACATATTTTATTTATATATGTATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTATTGGATAGTGAATGTAAACATATTTTATTTATATATGTATAAAA-  145

seq1  TCTCAGAAATAGAGAGAAACTATAATTTTAAAACATTTGAAATTAATAAA  200
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TCTCAGAAATAGAGAGAAACTATAA-TTTAAAACA-TTGAAATTAATAAA  193

seq1  GATAATTATAAATGATAGAGGGCATAGATTTGAAACGCAGTGTTTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTATAAATGATAGAGGGCATAGATTTGAAACGCAGTGTTTCTATG  243

seq1  AATTCCAAAGTCCAGTTTCAGGTCTGTAAATGTGCATATGCCAGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAAGTCCAGTTTCAGGTCTGTAAATGTGCATATGCCAGAAGATT  293

seq1  AGCCAAGTACACTGAAAGTCAGAAAATCCTATTCCAAAGCCTGAAGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTACACTGAAAGTCAGAAAATCCTATTCCAAAGCCTGAAGCTAA  343

seq1  AGGTCTGAAGTGGCAACCAAAGCGTCTTTAAGTTCGGAAAGGGCGCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAAGTGGCAACCAAAGCGTCTTTAAGTTCGGAAAGGGCGCCTAC  393

seq1  CTCCAGTCCTAGAGGACTTGCAGGTTTATGGTCCTCCCCAGCATCTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCTAGAGGACTTGCAGGTTTATGGTCCTCCCCAGCATCTTAAT  443

seq1  CATAACTCAATTGCCAGTTTTCTGAGACTATAAAGCTACAAAATCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCAATTGCCAGTTTTCTGAGACTATAAAGCTACAAAATCTTCTA  493

seq1  GTTATTCTCACACTAGAGTTTAGATTTATCTTATTATATATATCAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTCACACTAGAGTTTAGATTTATCTTATTATATATATCAATGTT  543

seq1  TGACCTGTGTGTATTGGTGTGTGCCATGTGCTTTTCTGGTGCCCATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTGTGTATTGGTGTGTGCCATGTGCTTTTCTGGTGCCCATGACA  593

seq1  ATCAGAAGAGGGCATCAGATCCCTTGAACTGAATATTGGAGTGGTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAGGGCATCAGATCCCTTGAACTGAATATTGGAGTGGTTGTGA  643

seq1  GCTACCATGCAGGTGCTAGAAACAGAACCTAGGCCATCTACAAGAGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATGCAGGTGCTAGAAACAGAACCTAGGCCATCTACAAGAGCATC  693

seq1  TAGTGTTCTTGCCAAATGATCTATCCCTCTAGTTCCTCACAGAAGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTTGCCAAATGATCTATCCCTCTAGTTCCTCACAGAAGGTTTC  743

seq1  AAAGTGACTGTTATTGATCAGTAATTTATTTTCCCTTCTCAAGAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTGTTATTGATCAGTAATTTATTTTCCCTTCTCAAGAAACAGT  793

seq1  AGAAGTGATGCAAGGAAACTACATAGAAAAGTGAAGTGCTGAATGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATGCAAGGAAACTACATAGAAAAGTGAAGTGCTGAATGAATTT  843

seq1  CCAAAAACTATAAAATCTACTCTTCTAGAAAGGTTCAAAGGAGAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACTATAAAATCTACTCTTCTAGAAAGGTTCAAAGGAGAAAAAAA  893

seq1  AAATGTTTTTGCCTGATAGCAGAAAGTTAGACTGGTGACATTAGGAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTGCCTGATAGCAGAAAGTTAGACTGGTGACATTAGGAGAGC  943

seq1  ATTCAGCATTCGTAGCCGCAAGATTTTAATATAATTACAAGCCCAAAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCATTCGTAGCCGCAAGATTTTAATATAATTACAAGCCCAAAGGT  993

seq1  AAAAGAGAATAAGTAATTGAATGGAGTTTTAGCTAAGTTAATAATGCAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAATAAGTAATTGAATGGAGTTTTAGCTAAGTTAATAATGCAAT  1043

seq1  AATGAAATAGGCAGAGAAAGAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  AATGAAATAGGCAGAGAAAGAGAATTC  1070


seq1: chr5_7649245_7650311
seq2: B6Ng01-026O12.g_68_1126

seq1  GAATTCCAGGGTAAAAAAAATTATCTCCCTCCATCACATACTTGATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAAAAAAAATTATCTCCCTCCATCACATACTTGATTTCA  50

seq1  ATTTGTGATTTTGTACTTTGTCTCATCAATGCAGCTGCTGAAGTAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGATTTTGTACTTTGTCTCATCAATGCAGCTGCTGAAGTAACACA  100

seq1  AAGTAGTGGAGGAAAGCAGGAGGTTAAACACAAGTCGGAGCAAGAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGGAGGAAAGCAGGAGGTTAAACACAAGTCGGAGCAAGAGGAGC  150

seq1  AGAGAGAAAGCCCAGTATTATTGAGCCCTGCAGTAAATGGCATGTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGCCCAGTATTATTGAGCCCTGCAGTAAATGGCATGTTAGAA  200

seq1  AGAACTGAGAGTCAGCCATGCTGCTGCCTTGCCCACTCACCAGCCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGAGTCAGCCATGCTGCTGCCTTGCCCACTCACCAGCCTTGTT  250

seq1  TTTGCTTACTATTTAAATAGCATAAAGTAGCTATATACACATGCTGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACTATTTAAATAGCATAAAGTAGCTATATACACATGCTGCCAA  300

seq1  AGATAAAACCGAGCCTCCTTGATAAAGATCTGTTTACATTATTTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACCGAGCCTCCTTGATAAAGATCTGTTTACATTATTTTCAGCT  350

seq1  GTTATGTTTAGAAATGTAAAGATGGTATGCCAACAATATACACTCATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTAGAAATGTAAAGATGGTATGCCAACAATATACACTCATTCA  400

seq1  CTAATTTATGCAGGATAAGCAACAAGCAACAGCAATTCAGTTTATCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTATGCAGGATAAGCAACAAGCAACAGCAATTCAGTTTATCAACC  450

seq1  AAGTATGCATCTCCCCGAGGAAGGGAACAGAAACACAGCAAAGTGATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCATCTCCCCGAGGAAGGGAACAGAAACACAGCAAAGTGATGAA  500

seq1  TCATTTGCATTTATTTGGAAAGTTATGCTAAACTGTCTATGATTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCATTTATTTGGAAAGTTATGCTAAACTGTCTATGATTATTTTC  550

seq1  AGTAGGAATGACCCCAATAAGTATACTGTTGTGGATGCTTGAATTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATGACCCCAATAAGTATACTGTTGTGGATGCTTGAATTCAGGC  600

seq1  TACGGGATCATAACAGAGGTTAGACTATGTGGGAATTAATACAGTGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGATCATAACAGAGGTTAGACTATGTGGGAATTAATACAGTGGTGG  650

seq1  CCTTGAAATACTAGGTTTAGAATAGCTATAGGTAGGTAACTCTTGACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAATACTAGGTTTAGAATAGCTATAGGTAGGTAACTCTTGACTCC  700

seq1  AAACAAGTTTAGACTTAGGGAGCATGAGAATTTATAGACATTTGCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTTAGACTTAGGGAGCATGAGAATTTATAGACATTTGCCCACT  750

seq1  GATTTATTCATTTGTTAAGTATGTATGAATTCTTCCTGAATAATCTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTCATTTGTTAAGTATGTATGAATTCTTCCTGAATAATCTACTG  800

seq1  AATATTTAGAGAAAAGGACCAATAAATCTTGACCTGTTTCAAATTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGAGAAAAGGACCAATAAATCTTGACCTGTTTCAAATTTACTT  850

seq1  CAGGATAAAGAAAATGAAAATTATGATATTGTATAGTAGAGGAAAAATAG  900
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CA-GATAAAGAAAATGAAAATTATGATATTGTATAGTAGAGG-AAAATAG  898

seq1  AAGAGATCTGAAAGAATAGAAGCAGGCACCCACCGAAGCCTCACAAAGGA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGAGATCTGAAAGAATAGAAGCA-GCACCCACCGAAGCCTCACAAAGGA  947

seq1  CACTGAAAGCCTGTTGATGCACAGACAAAAAAAGACTTCACACAAAAAGA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CACTGAAAGCCTGTTGATGCACAGAC-AAAAAAGACTTCACACAAAAAG-  995

seq1  AAACTAACTTCTTTATGTGTTTTGTATTGTTGGAAAATATCATTAAAATC  1050
      |||||||   || |||||| ||||   || ||||||||||||||||||||
seq2  AAACTAA---CTCTATGTGGTTTGGTATGGTGGAAAATATCATTAAAATC  1042

seq1  TTGGCAGTGCTACAGTG  1067
      |||||||||||||||||
seq2  TTGGCAGTGCTACAGTG  1059


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