BAC Information

Click to search

BAC

Clone NameB6Ng01-027D21
Chromosome5 (Build37)16 (Build37)
Map Location 55,033,588 - 55,034,61160,775,874 - 60,776,426
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380, EG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D21.bB6Ng01-027D21.g
ACCDH858042DH858043
length1,018936
definitionDH858042|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D21, 5' end.DH858043|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,033,588 - 55,034,611)(60,775,874 - 60,776,426)
sequence
gaattctttagaactgcagaagggaaagcaggttgcaatcacttatttat
tcagacatctgtattaggatgggtgttatatattggaggtgactcatagg
aagctttccttcatgaccacgcataaaagaagtcataatcattgtagaga
ggattacaaacaggtctagctaccactcacttctgttatcctgtaaataa
actgtgaaccactgtggggaagagttgcacatggtcaacctacaagactc
tggcaaaagttcctgacttttacaggaggcaggcaataaacttgatctga
aggagcctgcttatagtagacagcaccacacctgggcagatggtcctagc
tgtttaagaaagcaatgtgaggaaaatgtggagaacaagccaataaacgg
tattcctttatggactctcagaatcagcatcttgctccaggtttttgtca
tgatttcctgccctgacctccttaaatgattgatgtcaagctttaagatg
acatcaaactttttctcatcaagttgtgttcagggtgctttatcacagca
gcagaactataattatcaatatagcaaccacagtgctcaagttcaactaa
cattctctgtatagactgcaaaaataaaaatgtcaaagaatagaaattat
ataaagcacatcttccaaagatgaagcaatgaagccagaaatcagaaaga
tccttgaaaatccttaatgagagtgctaagaaaatgcttactttatgtgc
cttcaaattgaaagcaataagacaaatggagaaatgctactttagtagaa
agttaagtgtttttgttcattgaagaataagcccagattatgataatcga
gccactgacacgaacaaacacccatggttataaccagaatgtatgaaagc
tgtagaattcagcagttaaagaattagttcactaataaagtttattgtat
atgtgaatgcacatttttctgaaagtcatcaaaggatcatggtggaacat
gggtgagaagttgtgtca
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtgacttcttaaaatgagttg
gatagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaagatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttattctttgaa
tagttcttcttgtttccacttggttgatttcaccctgagttgataattcc
tgccatctactcctcttgggtgaattttccttccttttttctagggcttt
tagatgtgttgccagctgcagtatgtgcactctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55033588_55034611
seq2: B6Ng01-027D21.b_46_1063

seq1  GAATTCTTTAGAACTGCAGAAGGGAAAGCAGGTTGCAATCACTTATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAACTGCAGAAGGGAAAGCAGGTTGCAATCACTTATTTAT  50

seq1  TCAGACATCTGTATTAGGATGGGTGTTATATATTGGAGGTGACTCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATCTGTATTAGGATGGGTGTTATATATTGGAGGTGACTCATAGG  100

seq1  AAGCTTTCCTTCATGACCACGCATAAAAGAAGTCATAATCATTGTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCCTTCATGACCACGCATAAAAGAAGTCATAATCATTGTAGAGA  150

seq1  GGATTACAAACAGGTCTAGCTACCACTCACTTCTGTTATCCTGTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAAACAGGTCTAGCTACCACTCACTTCTGTTATCCTGTAAATAA  200

seq1  ACTGTGAACCACTGTGGGGAAGAGTTGCACATGGTCAACCTACAAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAACCACTGTGGGGAAGAGTTGCACATGGTCAACCTACAAGACTC  250

seq1  TGGCAAAAGTTCCTGACTTTTACAGGAGGCAGGCAATAAACTTGATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAGTTCCTGACTTTTACAGGAGGCAGGCAATAAACTTGATCTGA  300

seq1  AGGAGCCTGCTTATAGTAGACAGCACCACACCTGGGCAGATGGTCCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGCTTATAGTAGACAGCACCACACCTGGGCAGATGGTCCTAGC  350

seq1  TGTTTAAGAAAGCAATGTGAGGAAAATGTGGAGAACAAGCCAATAAACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGAAAGCAATGTGAGGAAAATGTGGAGAACAAGCCAATAAACGG  400

seq1  TATTCCTTTATGGACTCTCAGAATCAGCATCTTGCTCCAGGTTTTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTATGGACTCTCAGAATCAGCATCTTGCTCCAGGTTTTTGTCA  450

seq1  TGATTTCCTGCCCTGACCTCCTTAAATGATTGATGTCAAGCTTTAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCTGCCCTGACCTCCTTAAATGATTGATGTCAAGCTTTAAGATG  500

seq1  ACATCAAACTTTTTCTCATCAAGTTGTGTTCAGGGTGCTTTATCACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAACTTTTTCTCATCAAGTTGTGTTCAGGGTGCTTTATCACAGCA  550

seq1  GCAGAACTATAATTATCAATATAGCAACCACAGTGCTCAAGTTCAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTATAATTATCAATATAGCAACCACAGTGCTCAAGTTCAACTAA  600

seq1  CATTCTCTGTATAGACTGCAAAAATAAAAATGTCAAAGAATAGAAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGTATAGACTGCAAAAATAAAAATGTCAAAGAATAGAAATTAT  650

seq1  ATAAAGCACATCTTCCAAAGATGAAGCAATGAAGCCAGAAATCAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCACATCTTCCAAAGATGAAGCAATGAAGCCAGAAATCAGAAAGA  700

seq1  TCCTTGAAAATCCTTAATGAGAGTGCTAAGAAAATGCTTACTTTATGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAAATCCTTAATGAGAGTGCTAAGAAAATGCTTACTTTATGTGC  750

seq1  CTTCAAATTGAAAGCAATAAGACAAATGGAGAAATGCTACTTTAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTGAAAGCAATAAGACAAATGGAGAAATGCTACTTTAGTAGAA  800

seq1  AGTTAAGTGTTTTTGTTCATTGAAGAATAAGCCCAGATTATGAATAATCG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTAAGTGTTTTTGTTCATTGAAGAATAAGCCCAGATTATG-ATAATCG  849

seq1  AGCCACTGACACGAACAAACACCCATGGTTATAACCAGAATGTATGAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCACTGACACGAACAAACACCCATGGTTATAACCAGAATGTATG-AAA  898

seq1  GCTGTAAGAAATCAGCAGTTAAAGAATTAGGTTCACTAATAAAGTTTTAT  950
      ||||| |||| |||||||||||||||||| |||||||||||||| |||||
seq2  GCTGT-AGAATTCAGCAGTTAAAGAATTA-GTTCACTAATAAAG-TTTAT  945

seq1  TGTATATGTGAATGCACATTTTTCTGAAAGTCAATCAAAGGATCATGGTG  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTATATGTGAATGCACATTTTTCTGAAAGTC-ATCAAAGGATCATGGTG  994

seq1  GAACATGGGTGAGAGTTTGTGTCA  1024
      ||||||||||||||  ||||||||
seq2  GAACATGGGTGAGAAGTTGTGTCA  1018

seq1: chr16_60775874_60776426
seq2: B6Ng01-027D21.g_457_1003 (reverse)

seq1  GGGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAA  50
      ||||||  ||||||||| ||||| || |||||||||||||||||||||||
seq2  GGGAGAGTGCACATACT-GCAGC-TGGCAACACATCTAAAAGCCCTAGAA  48

seq1  AAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAA  100
      |||| | | | |||||||||||||||||||||| |||||| ||| ||| |
seq2  AAAAGGAAGGAAAATTCACCCAAGAGGAGTAGATGGCAGG-AATTATC-A  96

seq1  ACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCA-GGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAA  145

seq1  TTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA  194

seq1  CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAA  244

seq1  AATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA  294

seq1  ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAGATCTTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC  344

seq1  CTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAA  394

seq1  TCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAG  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGGATCAAGTTGACCATCTAAACAGTCCCATATCCCCTAAAGAAATAG  444

seq1  AAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGG  500
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGG  494

seq1  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCT  544

seq1  GCA  553
      |||
seq2  GCA  547