BAC Information

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BAC

Clone NameB6Ng01-027F16
Chromosome5 (Build37)
Map Location 144,859,541 - 145,049,692
singlet/doubletdoublet
Overlap geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Upstream gene2810055G22Rik, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027F16.bB6Ng01-027F16.g
ACCDH858118DH858119
length721533
definitionDH858118|Mus musculus domesticus DNA, BAC clone: B6Ng01-027F16, 5' end.DH858119|Mus musculus domesticus DNA, BAC clone: B6Ng01-027F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,048,974 - 145,049,692)(144,859,541 - 144,860,077)
sequence
gaattccacagaccgtggtggccaagactaaccaggtcagggttccccat
cctgcctctgtgaatggcccatttcattgatctgtctgaggtggcagaaa
ccgcacaggagtatggacagcgggaacccgtgggaagtgagctgggctgg
caaggccgagtcctgagtagagctgtgctcggctctcagggccgtgctct
gaggtctgcactggagtgaggctgcggaaacccagttcaagaagggtcac
gttaggaagaaacgtggccactgtgcttcccaacagaatcctgatggttt
cagccaaaacagttgtacattttcttttctaagaagatgtgacttgccaa
gaactgagtgcttagttttcaaataattgaagtgtattttgtttttgttt
ttttttttaatctccaacaagggattttttttatggttcaaaatagattt
aaagtaagtctgaatgtttccatatctgaagtgacatagtaatgtagtta
tattcttggccaggctgcagacgtctcttgtgagcgtctagcttgtcttt
ttatattgacttttggaaattttagctggcatcattggggtggggagcta
atgaacctgattggttaaaaaccctgactccttttctgccataactctcc
tttatccctgcacattagcttatgggacagtgtgtgttcttgggatcctg
gtggcctgtgactctccaggt
ccggcttccttggatgcagtgggtagagcttccggatggaagtcaacgca
cagcggggcaattgtacctcctctctagacctttgccttccttcccctct
gcccagaaagatcagcaggaagaggccgagttgagctcaagtgtcacagg
ccggctactgctttcctcaggtttttagtgtggcttgcctcgatcaacac
cagacatattccctagacatcctgtgccccgggctgagtcagttagcacc
acggacagctaagtgtttacaatgggtttttggagggagtttggaaacca
ggtgaagctctgggcttgcaagttgctaaagttccacctgataagatgca
aggcagctcttcaggtgtttttattcacaaattggactcccagagtcagc
aaaggtggtctccccaaccccaaggaaggggctcagagctgtgttacagt
caaacactttctccctttctattatgtgtgcatggatgtatgtgttgtgt
gcatggatgtatgtgttgtgtgcatgggatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145048974_145049692
seq2: B6Ng01-027F16.b_43_763 (reverse)

seq1  ACCTGGAGAAGTCACAGGCCACCAGGAT-CCAAGAACACACACTGTCCCA  49
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTGGAG-AGTCACAGGCCACCAGGATCCCAAGAACACACACTGTCCCA  49

seq1  TAAGCTAATGTGC-CGGATAAAGGAGAGCTATGGCAG-AAAGGAGTCAGG  97
      |||||||||||||  ||||||||||||| |||||||| ||||||||||||
seq2  TAAGCTAATGTGCAGGGATAAAGGAGAGTTATGGCAGAAAAGGAGTCAGG  99

seq1  GTTTTTAACCAATCAGGTTCATTAGCTCCCCACCCCAATGATGCCAGCTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAACCAATCAGGTTCATTAGCTCCCCACCCCAATGATGCCAGCTA  149

seq1  AAATTTCCAAAAGTCAATATAAAAAGACAAGCTAGACGCTCACAAGAGAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAAAAGTCAATATAAAAAGACAAGCTAGACGCTCACAAGAGAC  199

seq1  GTCTGCAGCCTGGCCAAGAATATAACTACATTACTATGTCACTTCAGATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGCCTGGCCAAGAATATAACTACATTACTATGTCACTTCAGATA  249

seq1  TGGAAACATTCAGACTTACTTTAAATCTATTTTGAACCATAAAAAAAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTCAGACTTACTTTAAATCTATTTTGAACCATAAAAAAAATC  299

seq1  CCTTGTTGGAGATTAAAAAAAAAAACAAAAACAAAATACACTTCAATTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGGAGATTAAAAAAAAAAACAAAAACAAAATACACTTCAATTAT  349

seq1  TTGAAAACTAAGCACTCAGTTCTTGGCAAGTCACATCTTCTTAGAAAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTAAGCACTCAGTTCTTGGCAAGTCACATCTTCTTAGAAAAGA  399

seq1  AAATGTACAACTGTTTTGGCTGAAACCATCAGGATTCTGTTGGGAAGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAACTGTTTTGGCTGAAACCATCAGGATTCTGTTGGGAAGCAC  449

seq1  AGTGGCCACGTTTCTTCCTAACGTGACCCTTCTTGAACTGGGTTTCCGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCACGTTTCTTCCTAACGTGACCCTTCTTGAACTGGGTTTCCGCA  499

seq1  GCCTCACTCCAGTGCAGACCTCAGAGCACGGCCCTGAGAGCCGAGCACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTCCAGTGCAGACCTCAGAGCACGGCCCTGAGAGCCGAGCACAG  549

seq1  CTCTACTCAGGACTCGGCCTTGCCAGCCCAGCTCACTTCCCACGGGTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCAGGACTCGGCCTTGCCAGCCCAGCTCACTTCCCACGGGTTCC  599

seq1  CGCTGTCCATACTCCTGTGCGGTTTCTGCCACCTCAGACAGATCAATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTCCATACTCCTGTGCGGTTTCTGCCACCTCAGACAGATCAATGAA  649

seq1  ATGGGCCATTCACAGAGGCAGGATGGGGAACCCTGACCTGGTTAGTCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATTCACAGAGGCAGGATGGGGAACCCTGACCTGGTTAGTCTTG  699

seq1  GCCACCACGGTCTGTGGAATTC  719
      ||||||||||||||||||||||
seq2  GCCACCACGGTCTGTGGAATTC  721

seq1: chr5_144859541_144860077
seq2: B6Ng01-027F16.g_69_606

seq1  GAATTCCCGGCTTCCTTGGATGCAGTGGGTAGAGCTTCCGGATGGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGCTTCCTTGGATGCAGTGGGTAGAGCTTCCGGATGGAAGTC  50

seq1  AACGCACAGCGGGGCAATTGTACCTCCTCTCTAGACCTTTGCCTTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCACAGCGGGGCAATTGTACCTCCTCTCTAGACCTTTGCCTTCCTTC  100

seq1  CCCTCTGCCCAGAAAGATCAGCAGGAAGAGGCCGAGTTGAGCTCAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCCAGAAAGATCAGCAGGAAGAGGCCGAGTTGAGCTCAAGTGT  150

seq1  CACAGGCCGGCTACTGCTTTCCTCAGGTTTTTAGTGTGGCTTGCCTCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCGGCTACTGCTTTCCTCAGGTTTTTAGTGTGGCTTGCCTCGAT  200

seq1  CAACACCAGACATATTCCCTAGACATCCTGTGCCCCGGGCTGAGTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAGACATATTCCCTAGACATCCTGTGCCCCGGGCTGAGTCAGTT  250

seq1  AGCACCACGGACAGCTAAGTGTTTACAATGGGTTTTTGGAGGGAGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACGGACAGCTAAGTGTTTACAATGGGTTTTTGGAGGGAGTTTGG  300

seq1  AAACCAGGTGAAGCTCTGGGCTTGCAAGTTGCTAAAGTTCCACCTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGTGAAGCTCTGGGCTTGCAAGTTGCTAAAGTTCCACCTGATAA  350

seq1  GATGCAAGGCAGCTCTTCAGGTGTTTTTATTCACAAATTGGACTCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGGCAGCTCTTCAGGTGTTTTTATTCACAAATTGGACTCCCAGA  400

seq1  GTCAGCAAAGGTGGTCTCCCCAACCCCAAGGAAGGGGCTCAGAGCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAAGGTGGTCTCCCCAACCCCAAGGAAGGGGCTCAGAGCTGTGT  450

seq1  TACAGTCAAACACTTTCTCCCTTTCTATTATGTGTGCATGGATGTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCAAACACTTTCTCCCTTTCTATTATGTGTGCATGGATGTATGTG  500

seq1  TTGTGTGCATGGATGTATGTGTTGTGTGCAT-GGATGT  537
      ||||||||||||||||||||||||||||||| ||||||
seq2  TTGTGTGCATGGATGTATGTGTTGTGTGCATGGGATGT  538