BAC Information

Click to search

BAC

Clone NameB6Ng01-027H01
Chromosome5 (Build37)
Map Location 21,914,345 - 22,054,469
singlet/doubletdoublet
Overlap geneLOC100041982, Orc5l, LOC100042049
Upstream geneAI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
Downstream geneLOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027H01.bB6Ng01-027H01.g
ACCDH858181DH858182
length9701,087
definitionDH858181|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H01, 5' end.DH858182|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,914,345 - 21,915,315)(22,053,383 - 22,054,469)
sequence
gaattcaatgaaaatgaatgcatgacctacccaaacttatgagtcacaat
gaaagcggtctgggtctctgtggttatctcatgcaggaggcttctgattc
acttggtattctcaagtccttcttgaagccaagtgacctgaaaatttgct
tctaactctgtcccaaagctcctgaaagcttgttttgtccctgcctattc
ttctgacttccaactatgtatgttcaaataggcagctttgagctcatccc
tcctcctgtttgatacagactttggctgccacctcctatcatgttttaga
tttacctggataccaggaatgcttatagaacgccatgttgcttctgtgtt
ttccctgcagtgtgctgaatttctctcaggcagcttttgcaaattctcta
tctgagggttctatcctactgactactacttggtcagtttgaggcaccct
gttttgagaattagagagggtaatagcttcataaaaggactttctacttg
ttggtatgcaataagtctggtggttaaagccttaggtatttataaatctc
cctaatctgacttttttgtgcctatcttaccagaaattcttaagaaggct
gcttacttttgaggccttgcaggtactaccaatatctcagcactggatag
catccaagatagatttgttgatagtcagctgtttgtccgttacaactgtt
ttaatattacagtgcaatccaagccaaggttttactcatatacattgctt
gtatatggttcaaaagaatctccggaaatattatatctacctacaagcta
ccttcctgagatcaagacaggtccagattccttacctatggttactgatc
taaattggtcagtgaagtttcctgctcatctatgggtcagcctcagactt
caattatatcttttgggtaccaatgccactgagatgtaatcttgaagcca
ccattcaccaaacccagcac
gaattcctgccccaactttccttcatgatgaactataaccgtcaagctga
agtaaaccctttcctccacaggacgcctctgagcatgctattaatcacgg
caatggaagcttgtatgggcagggaatactgtagtaggctccaaagagta
gatgtatacaagtgtgatgggattccagatttcatctagctttggaaaga
aagaaaaacaaaaagtcatgagcttcctttttgcttatgaaatgatacct
gaaattattttaaaaatttatgtctccccagtagatgtttgaagccatca
gagtctaccctgtttgacactggtatctgtgctgctcagtcgcttataat
tttataggataattccataaggggacacacgttgagttgaatttaagttc
aacttaaagtattaggcacacgcctttaatcccagcactcgggaggcaga
ggcaggcggatatctgagttcgaggccagcctggtctacaaagtgagttc
caggacagccaggaactacagggctacacagagaaaccctgtctcaaaaa
accaaataataataataaaaaaaagaatatgtatataccactgaaataac
ttggatttagtgttatcctgtcttttctttcttagagacatcatttcagc
tttccgtccatctttatttatggacacactgccagtgggaagacctatgt
aacacaaacattgttgaaaactttagaggtaagaataaccctaaccctga
tgtggacctttattcttacgtcactagagacggaatgaatcgagacaatt
tatttcaccacccagtgccttctctatctgcaaccagggcaagtagagtc
agctttgggattgttaggtactaaatgttaacgcatgaaaaatgaattgc
agttcttattataaacagttatagaagtattttagatgctatttatttat
gatattatcatatacctactatgtcctaagccagcagtaagccatatcta
tttgaagaggtatggctggtgatctgcaccaagtgtgtaccaaaatacag
aatgtgcagggcacagccttctaggttgctactctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21914345_21915315
seq2: B6Ng01-027H01.b_42_1011

seq1  GAATTCAATGAAAATGAATGCATGACCTACCCAAACTTATGAGTCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATGAATGCATGACCTACCCAAACTTATGAGTCACAAT  50

seq1  GAAAGCGGTCTGGGTCTCTGTGGTTATCTCATGCAGGAGGCTTCTGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGGTCTGGGTCTCTGTGGTTATCTCATGCAGGAGGCTTCTGATTC  100

seq1  ACTTGGTATTCTCAAGTCCTTCTTGAAGCCAAGTGACCTGAAAATTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTATTCTCAAGTCCTTCTTGAAGCCAAGTGACCTGAAAATTTGCT  150

seq1  TCTAACTCTGTCCCAAAGCTCCTGAAAGCTTGTTTTGTCCCTGCCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCTGTCCCAAAGCTCCTGAAAGCTTGTTTTGTCCCTGCCTATTC  200

seq1  TTCTGACTTCCAACTATGTATGTTCAAATAGGCAGCTTTGAGCTCATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTCCAACTATGTATGTTCAAATAGGCAGCTTTGAGCTCATCCC  250

seq1  TCCTCCTGTTTGATACAGACTTTGGCTGCCACCTCCTATCATGTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGTTTGATACAGACTTTGGCTGCCACCTCCTATCATGTTTTAGA  300

seq1  TTTACCTGGATACCAGGAATGCTTATAGAACGCCATGTTGCTTCTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGGATACCAGGAATGCTTATAGAACGCCATGTTGCTTCTGTGTT  350

seq1  TTCCCTGCAGTGTGCTGAATTTCTCTCAGGCAGCTTTTGCAAATTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCAGTGTGCTGAATTTCTCTCAGGCAGCTTTTGCAAATTCTCTA  400

seq1  TCTGAGGGTTCTATCCTACTGACTACTACTTGGTCAGTTTGAGGCACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGTTCTATCCTACTGACTACTACTTGGTCAGTTTGAGGCACCCT  450

seq1  GTTTTGAGAATTAGAGAGGGTAATAGCTTCATAAAAGGACTTTCTACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGAATTAGAGAGGGTAATAGCTTCATAAAAGGACTTTCTACTTG  500

seq1  TTGGTATGCAATAAGTCTGGTGGTTAAAGCCTTAGGTATTTATAAATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGCAATAAGTCTGGTGGTTAAAGCCTTAGGTATTTATAAATCTC  550

seq1  CCTAATCTGACTTTTTTGTGCCTATCTTACCAGAAATTCTTAAGAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCTGACTTTTTTGTGCCTATCTTACCAGAAATTCTTAAGAAGGCT  600

seq1  GCTTACTTTTGAGGCCTTGCAGGTACTACCAATATCTCAGCACTGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTTTGAGGCCTTGCAGGTACTACCAATATCTCAGCACTGGATAG  650

seq1  CATCCAAGATAGATTTGTTGATAGTCAGCTGTTTGTCCGTTACAACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGATAGATTTGTTGATAGTCAGCTGTTTGTCCGTTACAACTGTT  700

seq1  TTAATATTACAGTGCAATCCAAGCCAAGGTTTTACTCATATACATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTACAGTGCAATCCAAGCCAAGGTTTTACTCATATACATTGCTT  750

seq1  GTATATGGTTCAAAAGAATCTCCGGAAATATTATATCTACCTACAAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGTTCAAAAGAATCTCCGGAAATATTATATCTACCTACAAGCTA  800

seq1  CCTTCCCTGAGATCAAGACAGGTCCAGATTCCTTACCTATGGTTACTGAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTT-CCTGAGATCAAGACAGGTCCAGATTCCTTACCTATGGTTACTGAT  849

seq1  CTAAAATTGGTCAGTGAAGTTTCCTGCTCATCTATGGGTCAGCCTCAGAC  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-AAATTGGTCAGTGAAGTTTCCTGCTCATCTATGGGTCAGCCTCAGAC  898

seq1  TTCAATTATATC-TTTGGTTACCAATGCCACTGAGATGTAATCCTGAGCC  949
      |||||||||||| ||||| |||||||||||||||||||||||| |||  |
seq2  TTCAATTATATCTTTTGGGTACCAATGCCACTGAGATGTAATCTTGAAGC  948

seq1  AACAATTCACCAAACCCAGCAC  971
       || ||||||||||||||||||
seq2  CACCATTCACCAAACCCAGCAC  970

seq1: chr5_22053383_22054469
seq2: B6Ng01-027H01.g_66_1152 (reverse)

seq1  CCAGAGTTAGCAACCT-GAA-GCTGTGGCCTGCACA-TCTGTTTCTGTGT  47
      |||||| ||||||||| ||| |||||| |||||||| ||||| | |  ||
seq2  CCAGAG-TAGCAACCTAGAAGGCTGTGCCCTGCACATTCTGTATTTTGGT  49

seq1  ACACACTTGCTGCAGATCA-CAGCCATACCTTCTCAAATAGATATGGCTT  96
      ||||||||| ||||||||| |||||||||||  |||||||||||||||||
seq2  ACACACTTGGTGCAGATCACCAGCCATACCTCTTCAAATAGATATGGCTT  99

seq1  ACTGCTGGCTTAGGACATAAGTAGGTATATGATAATATTCATAAATAAAT  146
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  ACTGCTGGCTTAGGACAT-AGTAGGTATATGATAATA-TCATAAATAAAT  147

seq1  AGCATCTAAAATACTTCTATAACTGTTTATAATAAGAACTGCAATTCATT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAAAATACTTCTATAACTGTTTATAATAAGAACTGCAATTCATT  197

seq1  TTTCATGCGTTAACATTTAGTACCTAACAATCCCAAAGCTGACTCTACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCGTTAACATTTAGTACCTAACAATCCCAAAGCTGACTCTACTT  247

seq1  GCCCTGGTTTGCAGATAGAGAAGGCACTGGGTGGTGAAATAAATTGTCTC  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGG-TTGCAGATAGAGAAGGCACTGGGTGGTGAAATAAATTGTCTC  296

seq1  GATTCATTCCGTCTCTAGTGACGTAAGAATAAAGGTCCACATCAGGGTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCCGTCTCTAGTGACGTAAGAATAAAGGTCCACATCAGGGTTA  346

seq1  GGGTTATTCTTACCTCTAAAGTTTTCAACAATGTTTGTGTTACATAGGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTCTTACCTCTAAAGTTTTCAACAATGTTTGTGTTACATAGGTC  396

seq1  TTCCCACTGGCAGTGTGTCCATAAATAAAGATGGACGGAAAGCTGAAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGGCAGTGTGTCCATAAATAAAGATGGACGGAAAGCTGAAATG  446

seq1  ATGTCTCTAAGAAAGAAAAGACAGGATAACACTAAATCCAAGTTATTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTAAGAAAGAAAAGACAGGATAACACTAAATCCAAGTTATTTCA  496

seq1  GTGGTATATACATATTCTTTTTTTTATTATTATTATTTGGTTTTTTGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATATACATATTCTTTTTTTTATTATTATTATTTGGTTTTTTGAGA  546

seq1  CAGGGTTTCTCTGTGTAGCCCTGTAGTTCCTGGCTGTCCTGGAACTCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGTAGTTCCTGGCTGTCCTGGAACTCACT  596

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGATATCCGCCTGCCTCTGCCTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGATATCCGCCTGCCTCTGCCTCC  646

seq1  CGAGTGCTGGGATTAAAGGCGTGTGCCTAATACTTTAAGTTGAACTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGCGTGTGCCTAATACTTTAAGTTGAACTTAAA  696

seq1  TTCAACTCAACGTGTGTCCCCTTATGGAATTATCCTATAAAATTATAAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAACGTGTGTCCCCTTATGGAATTATCCTATAAAATTATAAGC  746

seq1  GACTGAGCAGCACAGATACCAGTGTCAAACAGGGTAGACTCTGATGGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCAGCACAGATACCAGTGTCAAACAGGGTAGACTCTGATGGCTT  796

seq1  CAAACATCTACTGGGGAGACATAAATTTTTAAAATAATTTCAGGTATCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTACTGGGGAGACATAAATTTTTAAAATAATTTCAGGTATCAT  846

seq1  TTCATAAGCAAAAAGGAAGCTCATGACTTTTTGTTTTTCTTTCTTTCCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGCAAAAAGGAAGCTCATGACTTTTTGTTTTTCTTTCTTTCCAA  896

seq1  AGCTAGATGAAATCTGGAATCCCATCACACTTGTATACATCTACTCTTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATGAAATCTGGAATCCCATCACACTTGTATACATCTACTCTTTG  946

seq1  GAGCCTACTACAGTATTCCCTGCCCATACAAGCTTCCATTGCCGTGATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTACTACAGTATTCCCTGCCCATACAAGCTTCCATTGCCGTGATTA  996

seq1  ATAGCATGCTCAGAGGCGTCCTGTGGAGGAAAGGGTTTACTTCAGCTTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGCTCAGAGGCGTCCTGTGGAGGAAAGGGTTTACTTCAGCTTGA  1046

seq1  CGGTTATAGTTCATCATGAAGGAAAGTTGGGGCAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATAGTTCATCATGAAGGAAAGTTGGGGCAGGAATTC  1087