BAC Information

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BAC

Clone NameB6Ng01-027I01
Chromosome5 (Build37)
Map Location 38,160,810 - 38,315,874
singlet/doubletdoublet
Overlap geneMsx1
Upstream geneMrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I01.bB6Ng01-027I01.g
ACCDH858228DH858229
length420756
definitionDH858228|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I01, 5' end.DH858229|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,160,810 - 38,161,235)(38,315,332 - 38,315,874)
sequence
tcataaccagagatactcatactggagctgcctgtgagccctggaggact
tcagatacacaaattacttcctatcatttgcatttctaatgacttcctgg
gggtgggaaacactgatgcagtgaaccaaccacacttaggtgccctgaaa
cattcctcatagccagcgctggggaagtgaagaaaggcaagttcttgggt
cccgctagttgactaagcttgccacactggtggggtccaggacagtgaga
gaacctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaacagcatcctgaga
aacgatacctgaggttgacttctgacctctgcatctacagacaggtttac
aaacataaatacatgcatatcctcaggcacataatggtaggacttcacaa
atccaggggggtggggtggg
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttatttcttacatcttcaggagccagggtgcaggaagcaag
agagcaagaagcaagagagagagaaaacgaaaccccgtccctcttaagga
gcattctccttcgcctcggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacagaacatgg
ctcagctccccagcaatctgcaattttggtgagaaaggctcctcttgctt
tgcaataatgtgggggcattcttcaggctgctctctgaggagcatgcttt
gctggctggacctcaggtgtcagagtcctccaagtagatcctatagactg
ctcccttctcagaaccccagtgagtaccagaatgccttgggaacctggtc
ttgaactacaacagcaattttgggctacatttctttatacccaaactatc
cctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38160810_38161235
seq2: B6Ng01-027I01.b_45_470

seq1  GAATTCTCATAACCAGAGATACTCATACTGGAGCTGCCTGTGAGCCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAACCAGAGATACTCATACTGGAGCTGCCTGTGAGCCCTGG  50

seq1  AGGACTTCAGATACACAAATTACTTCCTATCATTTGCATTTCTAATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCAGATACACAAATTACTTCCTATCATTTGCATTTCTAATGACT  100

seq1  TCCTGGGGGTGGGAAACACTGATGCAGTGAACCAACCACACTTAGGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGGTGGGAAACACTGATGCAGTGAACCAACCACACTTAGGTGCC  150

seq1  CTGAAACATTCCTCATAGCCAGCGCTGGGGAAGTGAAGAAAGGCAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATTCCTCATAGCCAGCGCTGGGGAAGTGAAGAAAGGCAAGTTC  200

seq1  TTGGGTCCCGCTAGTTGACTAAGCTTGCCACACTGGTGGGGTCCAGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCCGCTAGTTGACTAAGCTTGCCACACTGGTGGGGTCCAGGACA  250

seq1  GTGAGAGAACCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAACAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAACCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAACAGCATC  300

seq1  CTGAGAAACGATACCTGAGGTTGACTTCTGACCTCTGCATCTACAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACGATACCTGAGGTTGACTTCTGACCTCTGCATCTACAGACAG  350

seq1  GTTTACAAACATAAATACATGCATATCCTCAGGCACATAATGGTAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAACATAAATACATGCATATCCTCAGGCACATAATGGTAGGACT  400

seq1  TCACAAAACCAGGGGGGTGGGGTGGG  426
      ||||||| ||||||||||||||||||
seq2  TCACAAATCCAGGGGGGTGGGGTGGG  426

seq1: chr5_38315332_38315874
seq2: B6Ng01-027I01.g_278_824 (reverse)

seq1  GGCAGGGATAGTTTGGGTAT-AAGGAATGTAGCCC-AAATTGCTGTTGTA  48
      |||||||||||||||||||| ||| |||||||||| ||||||||||||||
seq2  GGCAGGGATAGTTTGGGTATAAAGAAATGTAGCCCAAAATTGCTGTTGTA  50

seq1  GTTTCAGACCAGGTTCCC-AGGCATTCTGGTACTCACTGGGGTTCTGAGA  97
      |||  ||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTCAAGACCAGGTTCCCAAGGCATTCTGGTACTCACTGGGGTTCTGAGA  100

seq1  AGGG-GCAGTCTATAGGATCTACTTGGAGGACTCTGACACCTGAGGTCCA  146
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAGTCTATAGGATCTACTTGGAGGACTCTGACACCTGAGGTCCA  150

seq1  GCCAGCAAAGCATGCTCCTCAGAGAGCAGCCTGAAGAATGCCCCCACATT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAAGCATGCTCCTCAGAGAGCAGCCTGAAGAATGCCCCCACATT  200

seq1  ATTGCAAAGCAAGAGGAGCCTTTCTCACCAAAATTGCAGATTGCTGGGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAGCAAGAGGAGCCTTTCTCACCAAAATTGCAGATTGCTGGGGA  250

seq1  GCTGAGCCATGTTCTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATGTTCTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGAT  300

seq1  GGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGC  350

seq1  CAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTCAACT  400

seq1  CGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGA  450

seq1  GAATGCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCCTTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  500

seq1  TGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGATGTAAGAAATAA  543
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTGCTTCCTGCACCCTGGCTCCTGAAGATGTAAGAAATAA  547