BAC Information

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BAC

Clone NameB6Ng01-027I24
Chromosome5 (Build37)
Map Location 141,776,209 - 141,924,529
singlet/doubletdoublet
Overlap genenone
Upstream geneMad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
Downstream geneSdk1, LOC666727, Foxk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I24.bB6Ng01-027I24.g
ACCDH858273DH858274
length1,000936
definitionDH858273|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I24, 5' end.DH858274|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,923,523 - 141,924,529)(141,776,209 - 141,777,151)
sequence
gaattcatttctcttctgctaattggtatcactgataaggactattaact
taaaatatgcctatttcctctgaaaagaacttaataacccatcattcata
ttacatcacctggttgcaaagtaaagaaccgagctgttacaagattaaac
agttatgagatacacagactctagtagtaataatctcacttaagacagat
ttcttttaatttaattggtacctaagcttacacatcaaaggaaataattc
caacctggaggcaagtgacaatatatcatttctgcatattctctcaatga
aaatacaaataagcaaacaaccaggaagcatcagagaaagacaaactgag
cctgacaattagctcttgagtgtatcatatcagcctttgactacttcgtg
tttaattgtcaatatcattccctcctgacagggctcatttagtgacacca
tagcttcccactaattcaacatttcactgcaaacttgaactagtaattaa
tcgatgtgaatcttgctgcatcaccctatacactctgtgaccgagtttta
ataggaccgtctcatttgtattcacatagtattgctataccaattatttc
ttatatatcaccttaaaataaatctgctttctttcttcatattagaagct
ttccctggattataaatacacagggaaaataacattttaataaaaacaaa
ccaggtaggctaatcacatcttgagatatacttcaacctatctccagata
tgcactctttattacagctaataattagtttctgggaatctagtgttcag
agctggatgagcaataaggaagatgcacggtctgctcaaagtctcatgag
tcagaattagtttttaacacacgaatatacatgctacacttacagtaata
gcaagagaacttttagcatcatttctcaaagttctatcacgacctcttag
aaacagaaggttccatgcttccatgacaccctcattgtctgtgactaaaa

gaattcctgttcgggggaataaactggacatgatttttttttttttcaag
ttcttaaagcagtcgtatgctactgacaatttttgacataaatctcctgg
tactgtaaggagcactggtttccatgttaaagaattaaattgactttgtg
ttagtagtgtttatatcattgtgagtgtctgagataggcaatgtgatttg
cagtgctggagacctgtgcatgctaatgtgtttccactgagatgaaggtg
gggagtgctgtaggaaatcagaactgccatgtgataaggttgccatcctg
tgatccaagtactagttgaaggcatgggaatgttttccagtcctctctca
gtttacctggtgaagcaggagcaaaccagctctcctttttcacccactca
gagctgggatcaggttcggtcctagccatgggctccatgctccatcccag
gtggctttctaaccccaaggcctaagcatttccaaccctgatttagttgc
agttcttccccagctcccgaggcaaatccattggaacactatttctctgt
tgcttaacttttagcttatattcctaaatgctttcactagttgttttctt
tttcctcagttttttccctgtgccctcagagaagttatgtacttctgaac
ctcttgggtgccgttttagtaattaagaatttagttcatgaatggtaccc
tagtgggcctgaaagagttaatacaaatttcttaagtactttattaattc
ctagggaataatttatgctgtagagtgtagcctgttacaataccgtaggg
atttttttttctttatggtctcttttggaaaggagccccagaaacaagtg
aatgtgggcataaatgtaagaatcctctttttaatattgaattgttcaat
atgtacatagaggtattatatctactagagattagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_141923523_141924529
seq2: B6Ng01-027I24.b_43_1042 (reverse)

seq1  TTTTAGTCACAGACAATTGAGGGTGTCATGGGAGACATGGAAACCTTCTG  50
      |||||||||||||||| |||||||||||||| || ||||| |||||||||
seq2  TTTTAGTCACAGACAA-TGAGGGTGTCATGGAAG-CATGG-AACCTTCTG  47

seq1  TTTCTAAGAGGTCGTTGATAGAACTTTGAGAAATGATTGCTATAAAGTTC  100
      |||||||||||||| ||||||||||||||||||||| ||||| |||||||
seq2  TTTCTAAGAGGTCG-TGATAGAACTTTGAGAAATGA-TGCTA-AAAGTTC  94

seq1  TCTTGCTATTACTGTAAGTGTAGCATGTATATTCGTGTGTTAAAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTATTACTGTAAGTGTAGCATGTATATTCGTGTGTTAAAAACTAA  144

seq1  TTCTGACTCATGAGACTTTTGAGCAGACCGTGCATCTTCCTTATTGCTCA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTGACTCATGAGAC-TTTGAGCAGACCGTGCATCTTCCTTATTGCTCA  193

seq1  TCCAGCTCTGAACACTAGATTCCCAGAAACTAATTATTAGCTGTAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTGAACACTAGATTCCCAGAAACTAATTATTAGCTGTAATAAA  243

seq1  GAGTGCATATCTGGAGATAGGTTGAAGTATATCTCAAGATGTGATTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATATCTGGAGATAGGTTGAAGTATATCTCAAGATGTGATTAGCC  293

seq1  TACCTGGTTTGTTTTTATTAAAATGTTATTTTCCCTGTGTATTTATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTTGTTTTTATTAAAATGTTATTTTCCCTGTGTATTTATAATC  343

seq1  CAGGGAAAGCTTCTAATATGAAGAAAGAAAGCAGATTTATTTTAAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGCTTCTAATATGAAGAAAGAAAGCAGATTTATTTTAAGGTGA  393

seq1  TATATAAGAAATAATTGGTATAGCAATACTATGTGAATACAAATGAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGAAATAATTGGTATAGCAATACTATGTGAATACAAATGAGACG  443

seq1  GTCCTATTAAAACTCGGTCACAGAGTGTATAGGGTGATGCAGCAAGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATTAAAACTCGGTCACAGAGTGTATAGGGTGATGCAGCAAGATTC  493

seq1  ACATCGATTAATTACTAGTTCAAGTTTGCAGTGAAATGTTGAATTAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGATTAATTACTAGTTCAAGTTTGCAGTGAAATGTTGAATTAGTGG  543

seq1  GAAGCTATGGTGTCACTAAATGAGCCCTGTCAGGAGGGAATGATATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATGGTGTCACTAAATGAGCCCTGTCAGGAGGGAATGATATTGAC  593

seq1  AATTAAACACGAAGTAGTCAAAGGCTGATATGATACACTCAAGAGCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACACGAAGTAGTCAAAGGCTGATATGATACACTCAAGAGCTAAT  643

seq1  TGTCAGGCTCAGTTTGTCTTTCTCTGATGCTTCCTGGTTGTTTGCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCTCAGTTTGTCTTTCTCTGATGCTTCCTGGTTGTTTGCTTATT  693

seq1  TGTATTTTCATTGAGAGAATATGCAGAAATGATATATTGTCACTTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCATTGAGAGAATATGCAGAAATGATATATTGTCACTTGCCTC  743

seq1  CAGGTTGGAATTATTTCCTTTGATGTGTAAGCTTAGGTACCAATTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGAATTATTTCCTTTGATGTGTAAGCTTAGGTACCAATTAAATT  793

seq1  AAAAGAAATCTGTCTTAAGTGAGATTATTACTACTAGAGTCTGTGTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATCTGTCTTAAGTGAGATTATTACTACTAGAGTCTGTGTATCT  843

seq1  CATAACTGTTTAATCTTGTAACAGCTCGGTTCTTTACTTTGCAACCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGTTTAATCTTGTAACAGCTCGGTTCTTTACTTTGCAACCAGGT  893

seq1  GATGTAATATGAATGATGGGTTATTAAGTTCTTTTCAGAGGAAATAGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATATGAATGATGGGTTATTAAGTTCTTTTCAGAGGAAATAGGCA  943

seq1  TATTTTAAGTTAATAGTCCTTATCAGTGATACCAATTAGCAGAAGAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTTAATAGTCCTTATCAGTGATACCAATTAGCAGAAGAGAAA  993

seq1  TGAATTC  1007
      |||||||
seq2  TGAATTC  1000

seq1: chr5_141776209_141777151
seq2: B6Ng01-027I24.g_70_1005

seq1  GAATTCCTGTTCGGGGGAATAAACTGGACATGATTTTTTTTTTTTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCGGGGGAATAAACTGGACATGATTTTTTTTTTTTTCAAG  50

seq1  TTCTTAAAGCAGTCGTATGCTACTGACAATTTTTGACATAAATCTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGCAGTCGTATGCTACTGACAATTTTTGACATAAATCTCCTGG  100

seq1  TACTGTAAGGAGCACTGGTTTCCATGTTAAAGAATTAAATTGACTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAGGAGCACTGGTTTCCATGTTAAAGAATTAAATTGACTTTGTG  150

seq1  TTAGTAGTGTTTATATCATTGTGAGTGTCTGAGATAGGCAATGTGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTGTTTATATCATTGTGAGTGTCTGAGATAGGCAATGTGATTTG  200

seq1  CAGTGCTGGAGACCTGTGCATGCTAATGTGTTTCCACTGAGATGAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGGAGACCTGTGCATGCTAATGTGTTTCCACTGAGATGAAGGTG  250

seq1  GGGAGTGCTGTAGGAAATCAGAACTGCCATGTGATAAGGTTGCCATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCTGTAGGAAATCAGAACTGCCATGTGATAAGGTTGCCATCCTG  300

seq1  TGATCCAAGTACTAGTTGAAGGCATGGGAATGTTTTCCAGTCCTCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAGTACTAGTTGAAGGCATGGGAATGTTTTCCAGTCCTCTCTCA  350

seq1  GTTTACCTGGTGAAGCAGGAGCAAACCAGCTCTCCTTTTTCACCCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTGGTGAAGCAGGAGCAAACCAGCTCTCCTTTTTCACCCACTCA  400

seq1  GAGCTGGGATCAGGTTCGGTCCTAGCCATGGGCTCCATGCTCCATCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGATCAGGTTCGGTCCTAGCCATGGGCTCCATGCTCCATCCCAG  450

seq1  GTGGCTTTCTAACCCCAAGGCCTAAGCATTTCCAACCCTGATTTAGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCTAACCCCAAGGCCTAAGCATTTCCAACCCTGATTTAGTTGC  500

seq1  AGTTCTTCCCCAGCTCCCGAGGCAAATCCATTGGAACACTATTTCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCCCAGCTCCCGAGGCAAATCCATTGGAACACTATTTCTCTGT  550

seq1  TGCTTAACTTTTAGCTTATATTCCTAAATGCTTTCACTAGTTGTTTTC-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTTAACTTTTAGCTTATATTCCTAAATGCTTTCACTAGTTGTTTTCTT  600

seq1  TTTCCTCAGTTTTTTCCCTGTGCCCTCAGAGAAGTTATGTACTTCTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGTTTTTTCCCTGTGCCCTCAGAGAAGTTATGTACTTCTGAAC  650

seq1  CTCTTGGGTGCCGTTTTAGTAAATTAAGAATTTAGTTCATGAATGGTACC  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTTGGGTGCCGTTTTAGT-AATTAAGAATTTAGTTCATGAATGGTACC  699

seq1  CTAGT-GGCCTGAAAGAGTTAATACAAATTTCTTAAGTACTTTATTAATT  748
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGGCCTGAAAGAGTTAATACAAATTTCTTAAGTACTTTATTAATT  749

seq1  CCTAGGGAATAATTTATGCTGTAGAGTGTAGCCTGTTACAAATACCGTAG  798
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTAGGGAATAATTTATGCTGTAGAGTGTAGCCTGTTAC-AATACCGTAG  798

seq1  GGTATTTTTTTTTCTTTTATGGTCTCTTTTGGAAAGGAGGCCCCAGAAAC  848
      || ||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GG-ATTTTTTTTTC-TTTATGGTCTCTTTTGGAAAGGA-GCCCCAGAAAC  845

seq1  AAGTGAATGTGGGCATAAATGTAAGAATCCTCTTTTATAAATATTTAAAT  898
      |||||||||||||||||||||||||||||||||||  | |||||| || |
seq2  AAGTGAATGTGGGCATAAATGTAAGAATCCTCTTT--TTAATATTGAATT  893

seq1  GTATAATATGTACATAAGAGTATTATTACCATAGTAGAGATTAGG  943
      ||  ||||||||||||   |||||||  |  || |||||||||||
seq2  GTTCAATATGTACATAGAGGTATTATATC--TACTAGAGATTAGG  936