BAC Information

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BAC

Clone NameB6Ng01-027J16
Chromosome5 (Build37)
Map Location 28,120,400 - 28,227,245
singlet/doubletdoublet
Overlap geneHtr5a, EG433862
Upstream geneDpp6, B930011P16Rik, Speer4b, Paxip1
Downstream geneLOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J16.bB6Ng01-027J16.g
ACCDH858305DH858306
length684904
definitionDH858305|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J16, 5' end.DH858306|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,226,562 - 28,227,245)(28,120,400 - 28,121,303)
sequence
gaattcagtgtggtgaggggtaggctaattgttaatcttgttctggcagc
tgcaaacttagtcatttcaactgttaaaactatgtttctacatttgttta
gtcagccagcttctttatctggctctgtacttggcctgctagtacatttt
ggaaagtcctttccgaaggcagaaggtactgggtggtcttgactttattt
tggatattacaggttcatttcccagtaccctgtggcttcttacaactatc
tgtaactccagttactgttgtgccctgagttcacaggaaacccagatgag
cccaaaaattgcaaagtccactgcaacttgcaaaagagtcttttattttc
aagcttgaactcggttcactcacctaacactcactgcgtgaatgctggca
agcgaccctgagtcaagaaaacattgggtttatatgcagtataggaatag
tgtgaatatttacagaaaaggggagtaaagggtagaatagtactgaagca
ggaggggggttaatgggtgtctgttcaaggactaatttttatgaccagtc
atatctgtctgtgacctgacctcagtttaccttttactttttccatggtc
tcccttgagcttgttatttctctaaggtctcaaggacaggcacctggaga
gttatcaggaggagtgttgggtgttggtttttgg
gaattccaatgtttgtactgtacatacagaattttctgcttgtacagaaa
cataatggcttaatttcaggaaacaaagacttatttcccaagtaatccat
gcctgtcaattaaaaccagcaaccaaacgcctcctcttgtactcaggaag
ccccaaacactaattggcagccctgaactgtctcatgttgcctgtgtcaa
cctttttgaaagatacatgtaaaagggctgggggatgggatgggtgcatt
tcacactgctgtgctggagatgaccagcagagggcatccaccctagggct
ggaatgcatgtatggttgtgtacatgtaggtgatagaaaccaaatttgtc
ctctgcaagagtagcaagccatgcaaagtattgagccacctctccagctt
ccaacccaacccactacttcctgacctgtgctgtcactttgcttttgact
aaagcttctttaccactttgcaaatgtgtatgtgtggtttttttttttca
attccttgactaagataccaaaaacacagaaacaccctgtcagagactga
ccatcagtagccccttgagtaggagaagaacaaaggacttgttctgccca
ctctgcctccagggcccatcatttcaccccaggcttcttttctacccttg
catccatccagccctagtgccccttcattccctctgaagatgatcctgac
ctcagcatgctgcttcagttatgcatcccacagatggacatgaaacaggg
acagtgagatgtgtttatttaatatgcctacatccagaaactaagaaata
atatgcaccggtgagcctgattctgataagaaagcacaacagagacctac
agatgaggtttctgtgtgccagaagagctggggagagttgtgtttgtgtg
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_28226562_28227245
seq2: B6Ng01-027J16.b_47_730 (reverse)

seq1  CCAAAAACCAACACCCAACACTCCTCCTGATAACTCTCCAGGTGCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACCAACACCCAACACTCCTCCTGATAACTCTCCAGGTGCCTGTC  50

seq1  CTTGAGACCTTAGAGAAATAACAAGCTCAAGGGAGACCATGGAAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACCTTAGAGAAATAACAAGCTCAAGGGAGACCATGGAAAAAGTA  100

seq1  AAAGGTAAACTGAGGTCAGGTCACAGACAGATATGACTGGTCATAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAACTGAGGTCAGGTCACAGACAGATATGACTGGTCATAAAAAT  150

seq1  TAGTCCTTGAACAGACACCCATTAACCCCCCTCCTGCTTCAGTACTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTGAACAGACACCCATTAACCCCCCTCCTGCTTCAGTACTATTC  200

seq1  TACCCTTTACTCCCCTTTTCTGTAAATATTCACACTATTCCTATACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTACTCCCCTTTTCTGTAAATATTCACACTATTCCTATACTGCA  250

seq1  TATAAACCCAATGTTTTCTTGACTCAGGGTCGCTTGCCAGCATTCACGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCCAATGTTTTCTTGACTCAGGGTCGCTTGCCAGCATTCACGCA  300

seq1  GTGAGTGTTAGGTGAGTGAACCGAGTTCAAGCTTGAAAATAAAAGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTTAGGTGAGTGAACCGAGTTCAAGCTTGAAAATAAAAGACTCT  350

seq1  TTTGCAAGTTGCAGTGGACTTTGCAATTTTTGGGCTCATCTGGGTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTTGCAGTGGACTTTGCAATTTTTGGGCTCATCTGGGTTTCCT  400

seq1  GTGAACTCAGGGCACAACAGTAACTGGAGTTACAGATAGTTGTAAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCAGGGCACAACAGTAACTGGAGTTACAGATAGTTGTAAGAAGC  450

seq1  CACAGGGTACTGGGAAATGAACCTGTAATATCCAAAATAAAGTCAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTACTGGGAAATGAACCTGTAATATCCAAAATAAAGTCAAGACC  500

seq1  ACCCAGTACCTTCTGCCTTCGGAAAGGACTTTCCAAAATGTACTAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTACCTTCTGCCTTCGGAAAGGACTTTCCAAAATGTACTAGCAGG  550

seq1  CCAAGTACAGAGCCAGATAAAGAAGCTGGCTGACTAAACAAATGTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACAGAGCCAGATAAAGAAGCTGGCTGACTAAACAAATGTAGAAA  600

seq1  CATAGTTTTAACAGTTGAAATGACTAAGTTTGCAGCTGCCAGAACAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTAACAGTTGAAATGACTAAGTTTGCAGCTGCCAGAACAAGAT  650

seq1  TAACAATTAGCCTACCCCTCACCACACTGAATTC  684
      ||||||||||||||||||||||||||||||||||
seq2  TAACAATTAGCCTACCCCTCACCACACTGAATTC  684

seq1: chr5_28120400_28121303
seq2: B6Ng01-027J16.g_68_971

seq1  GAATTCCAATGTTTGTACTGTACATACAGAATTTTCTGCTTGTACAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTTTGTACTGTACATACAGAATTTTCTGCTTGTACAGAAA  50

seq1  CATAATGGCTTAATTTCAGGAAACAAAGACTTATTTCCCAAGTAATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGCTTAATTTCAGGAAACAAAGACTTATTTCCCAAGTAATCCAT  100

seq1  GCCTGTCAATTAAAACCAGCAACCAAACGCCTCCTCTTGTACTCAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCAATTAAAACCAGCAACCAAACGCCTCCTCTTGTACTCAGGAAG  150

seq1  CCCCAAACACTAATTGGCAGCCCTGAACTGTCTCATGTTGCCTGTGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACACTAATTGGCAGCCCTGAACTGTCTCATGTTGCCTGTGTCAA  200

seq1  CCTTTTTGAAAGATACATGTAAAAGGGCTGGGGGATGGGATGGGTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAAAGATACATGTAAAAGGGCTGGGGGATGGGATGGGTGCATT  250

seq1  TCACACTGCTGTGCTGGAGATGACCAGCAGAGGGCATCCACCCTAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGCTGTGCTGGAGATGACCAGCAGAGGGCATCCACCCTAGGGCT  300

seq1  GGAATGCATGTATGGTTGTGTACATGTAGGTGATAGAAACCAAATTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCATGTATGGTTGTGTACATGTAGGTGATAGAAACCAAATTTGTC  350

seq1  CTCTGCAAGAGTAGCAAGCCATGCAAAGTATTGAGCCACCTCTCCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAGAGTAGCAAGCCATGCAAAGTATTGAGCCACCTCTCCAGCTT  400

seq1  CCAACCCAACCCACTACTTCCTGACCTGTGCTGTCACTTTGCTTTTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCAACCCACTACTTCCTGACCTGTGCTGTCACTTTGCTTTTGACT  450

seq1  AAAGCTTCTTTACCACTTTGCAAATGTGTATGTGTGGTTTTTTTTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTTTACCACTTTGCAAATGTGTATGTGTGGTTTTTTTTTTTCA  500

seq1  ATTCCTTGACTAAGATACCAAAAACACAGAAACACCCTGTCAGAGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGACTAAGATACCAAAAACACAGAAACACCCTGTCAGAGACTGA  550

seq1  CCATCAGTAGCCCCTTGAGTAGGAGAAGAACAAAGGACTTGTTCTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTAGCCCCTTGAGTAGGAGAAGAACAAAGGACTTGTTCTGCCCA  600

seq1  CTCTGCCTCCAGGGCCCATCATTTCACCCCAGGCTTCTTTTCTACCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCAGGGCCCATCATTTCACCCCAGGCTTCTTTTCTACCCTTG  650

seq1  CATCCATCCAGCCCTAGTGCCCCTTCATTCCCTCTGAAGATGATCCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCAGCCCTAGTGCCCCTTCATTCCCTCTGAAGATGATCCTGAC  700

seq1  CTCAGCATGCTGCTTCAGTTATGCATCCCACAGATGGACATGAAACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGCTGCTTCAGTTATGCATCCCACAGATGGACATGAAACAGGG  750

seq1  ACAGTGAGATGTGTTTTATTAATATGCCTACATCCAGAAACTAAGAAATA  800
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  ACAGTGAGATGTGTTTATTTAATATGCCTACATCCAGAAACTAAGAAATA  800

seq1  ATATGCACCGGTGAGCCTGATTCTGATAAGAAAGCACAACAAGAGACCTA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATGCACCGGTGAGCCTGATTCTGATAAGAAAGCACAAC-AGAGACCTA  849

seq1  CAGATGAGGGTTCTGTGTGCCAGAAGAGCTGGGGAGAGTTG-GGTTGTGT  899
      ||||||||| ||||||||||||||||||||||||||||||| | ||||||
seq2  CAGATGAGGTTTCTGTGTGCCAGAAGAGCTGGGGAGAGTTGTGTTTGTGT  899

seq1  GGGGG  904
      |||||
seq2  GGGGG  904