BAC Information

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BAC

Clone NameB6Ng01-027K19
Chromosome5 (Build37)
Map Location 91,131,901 - 91,308,007
singlet/doubletdoublet
Overlap geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
Upstream geneAdamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6
Downstream geneCxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K19.bB6Ng01-027K19.g
ACCDH858356DH858357
length701910
definitionDH858356|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K19, 5' end.DH858357|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,131,901 - 91,132,599)(91,307,095 - 91,308,007)
sequence
gaattcctcagtgtgtgcattattgtctggcactgacagcttattttaga
ctttggaagaaaattagcattttctcataaaaatgtgatttcagtctgac
ttatgacctagggtcgatttagggctaactctagaagccagatgcatatg
taatgtctgggtggtgtgcagttagcacaactgggaatgccccatgacta
aattatccacccccagactgatgtctgcaattcttattttctattgaaaa
gcatgttttatttgtgtattaaggagaaaaggggacatttttttttaccc
tttaaaggctatttatgttataaaagacaagaggaagaagagttgggtgt
cttaggcgggcactctagggacagcatgggacacagtgtgcaggaaccca
cagtaggccttcccactaacactcttcttgaacagacccagcttaacatt
tgtgatggaatgtatgagtcttgctatttttatggggtacaaagccatac
actggagccagtgaaacagacagaatactgaaataatatagctctgtctt
cagaggaaaaccaattacctgcaacaagcggtcaggtgctgcagagaggg
gagtgagggttatgtgggagaccatcatggtttgttttatttcttctctg
cctcacagcagagcttctccaataagccaggcagagagcagctggttaaa
a
gaattcatttaactgtcacagcaacttcacaaggaagggttttaatattg
cacaggtggggcaagtggggttcagggaggttgacctacatcataggcaa
caaatgaaggagttagtgttcttagccggccacttctcagtaaatgctct
cagtgagagacacacccctgagacaaatgaaggcaataggagcagagaga
ggtgatcatggacaactgtgtcaggtcattcttcaaattttgtcttttat
aaaactactttcagccaggtggtggtggtgcatgcctttaatcccagcac
ttggaaggcagaggcaggtggatttctgagttcgaggccagcctggtcta
caaagtgagttccaggacagccagggctacagagaaaccctatcttgaaa
aaaaaaaaacccaataaataaataaataaataaataaataagtaaataaa
taaataaataaaaactactttcaacttatttcaattctttttaatataag
atagaccacagtagaaacctcgttaatggtttaagaataatacttttaag
tagatctaagagtaccaaaaatcattatttttttaagtgtaaaaatgtgt
ccaaatttctgtggcactttgattatagcttattaattgagttgttatgt
taactgttattactatattggttaaacactgagttaagtctttccaatta
tccttgactccttgttcttcttctctgaatttcttctcctgtttgttttt
gcacattagggcatggaaataaagagtcaacatcagggtcacacagagat
atagagaagggatcagagccagttgggaccaggccaccttcacgtccagg
ccacactgtcctttgagtcatgtgaggaacaaagatcatcatggtacata
gaggatttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91131901_91132599
seq2: B6Ng01-027K19.b_44_744

seq1  GAATTCCTCAGTGTGTGCATTATTGTCTGGCACTGACAGCTTATTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTGTGTGCATTATTGTCTGGCACTGACAGCTTATTTTAGA  50

seq1  CTTTGGAAGAAAATTAGCATTTTCTCATAAAAATGTGATTTCAGTCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGAAAATTAGCATTTTCTCATAAAAATGTGATTTCAGTCTGAC  100

seq1  TTATGACCTAGGGTCGATTTAGGGCTAACTCTAGAAGCCAGATGCATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACCTAGGGTCGATTTAGGGCTAACTCTAGAAGCCAGATGCATATG  150

seq1  TAATGTCTGGGTGGTGTGCAGTTAGCACAACTGGGAATGCCCCATGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGGGTGGTGTGCAGTTAGCACAACTGGGAATGCCCCATGACTA  200

seq1  AATTATCCACCCCCAGACTGATGTCTGCAATTCTTATTTTCTATTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCACCCCCAGACTGATGTCTGCAATTCTTATTTTCTATTGAAAA  250

seq1  GCATGTTTTATTTGTGTATTAAGGAGAAAAGGGGACATTTTTTTTTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTATTTGTGTATTAAGGAGAAAAGGGGACATTTTTTTTTACCC  300

seq1  TTTAAAGGCTATTTATGTTATAAAAGACAAGAGGAAGAAGAGTTGGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCTATTTATGTTATAAAAGACAAGAGGAAGAAGAGTTGGGTGT  350

seq1  CTTAGGCGGGCACTCTAGGGACAGCATGGGACACAGTGTGCAGGAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCGGGCACTCTAGGGACAGCATGGGACACAGTGTGCAGGAACCCA  400

seq1  CAGTAGGCCTTCCCACTAACACTCTTCTTGAACAGACCCAGCTTAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCCTTCCCACTAACACTCTTCTTGAACAGACCCAGCTTAACATT  450

seq1  TGTGATGGAATGTATGAGTCTTGCTATTTTTATGGGGTACAAAGCCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAATGTATGAGTCTTGCTATTTTTATGGGGTACAAAGCCATAC  500

seq1  ACTGGAGCCAGTGAAACAGACAGAATACTGAAATAATATAGCTCTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCCAGTGAAACAGACAGAATACTGAAATAATATAGCTCTGTCTT  550

seq1  CAGAGGAAAACCAATTACCTGCAACAAGCGGTCAGGTGCTGCAGAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAAACCAATTACCTGCAACAAGCGGTCAGGTGCTGCAGAGAGGG  600

seq1  GAGTGAGGGTTATGTGGGAGACCATCATGGTT--GTCTATTTCTTCTCTG  648
      ||||||||||||||||||||||||||||||||   | |||||||||||||
seq2  GAGTGAGGGTTATGTGGGAGACCATCATGGTTTGTTTTATTTCTTCTCTG  650

seq1  CCTCACAGCAGAGCTTCTCCAATAGGCCAGGCAGAGAGCAGCTGGTTAAA  698
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCACAGCAGAGCTTCTCCAATAAGCCAGGCAGAGAGCAGCTGGTTAAA  700

seq1  A  699
      |
seq2  A  701

seq1: chr5_91307095_91308007
seq2: B6Ng01-027K19.g_65_974 (reverse)

seq1  GTAAACTCCTCTATGTACCATGAATGATCTTTGTTCCTCACATGGACTCA  50
      ||||| |||||||||||||||| |||||||||||||||||||| ||||||
seq2  GTAAA-TCCTCTATGTACCATG-ATGATCTTTGTTCCTCACAT-GACTCA  47

seq1  AAGGACAGTGTGGCCTGGACGTGAAGGGTGGCCTGGTCCCAACTGGCTCT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGGACAGTGTGGCCTGGACGTGAA-GGTGGCCTGGTCCCAACTGGCTCT  96

seq1  GATCCCTTCTCTATATCTCTGTGTGACCTTGATGTTGACTCTTTATTTCC  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCCCTTCTCTATATCTCTGTGTGACCCTGATGTTGACTCTTTATTTCC  146

seq1  ATGCCCTAATGTGCAAAAACAAACAGGAGAAGAAATTCAGAGAAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTAATGTGCAAAAACAAACAGGAGAAGAAATTCAGAGAAGAAGAA  196

seq1  CAAGGAGTCAAGGATAATTGGAAAGACTTAACTCAGTGTTTAACCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGTCAAGGATAATTGGAAAGACTTAACTCAGTGTTTAACCAATAT  246

seq1  AGTAATAACAGTTAACATAACAACTCAATTAATAAGCTATAATCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAACAGTTAACATAACAACTCAATTAATAAGCTATAATCAAAGTG  296

seq1  CCACAGAAATTTGGACACATTTTTACACTTAAAAAAATAATGATTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAATTTGGACACATTTTTACACTTAAAAAAATAATGATTTTTGG  346

seq1  TACTCTTAGATCTACTT-AAAGTATTATTCTTAAACCATTAACGAGGTTT  399
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACTCTTAGATCTACTTAAAAGTATTATTCTTAAACCATTAACGAGGTTT  396

seq1  CTACTGTGGTCTATCTTATATTAAAAAGAATTGAAATAAGTTGAAAGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGGTCTATCTTATATTAAAAAGAATTGAAATAAGTTGAAAGTAG  446

seq1  TTTTTATTTATTTATTTATTTACTTATTTATTTATTTATTTATTTATTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTTATTTATTTACTTATTTATTTATTTATTTATTTATTTA  496

seq1  TTGGGTTTTTTTTTTTTCAAGATAGGGTTTCTCTGTAGCCCTGGCTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTTTTTTTTTCAAGATAGGGTTTCTCTGTAGCCCTGGCTGTCC  546

seq1  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTG  596

seq1  CCTCTGCCTTCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCTGG  646

seq1  CTGAAAGTAGTTTTATAAAAGACAAAATTTGAAGAATGACCTGACACAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTAGTTTTATAAAAGACAAAATTTGAAGAATGACCTGACACAGT  696

seq1  TGTCCATGATCACCTCTCTCTGCTCCTATTGCCTTCATTTGTCTCAGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGATCACCTCTCTCTGCTCCTATTGCCTTCATTTGTCTCAGGGG  746

seq1  TGTGTCTCTCACTGAGAGCATTTACTGAGAAGTGGCCGGCTAAGAACACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTCACTGAGAGCATTTACTGAGAAGTGGCCGGCTAAGAACACT  796

seq1  AACTCCTTCATTTGTTGCCTATGATGTAGGTCAACCTCCCTGAACCCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTCATTTGTTGCCTATGATGTAGGTCAACCTCCCTGAACCCCAC  846

seq1  TTGCCCCACCTGTGCAATATTAAAACCCTTCCTTGTGAAGTTGCTGTGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCACCTGTGCAATATTAAAACCCTTCCTTGTGAAGTTGCTGTGAC  896

seq1  AGTTAAATGAATTC  913
      ||||||||||||||
seq2  AGTTAAATGAATTC  910