BAC Information

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BAC

Clone NameB6Ng01-027K20
Chromosome5 (Build37)
Map Location 68,267,296 - 68,419,832
singlet/doubletdoublet
Overlap geneEG330097, EG666977
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458
Downstream geneAY616753, LOC666996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K20.bB6Ng01-027K20.g
ACCDH858358DH858359
length1,047855
definitionDH858358|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K20, 5' end.DH858359|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,418,768 - 68,419,832)(68,267,296 - 68,268,137)
sequence
gaattctctgtttgaccaagcagaaatgataagcctttaagaaaaggaag
tgttatgctggagtctagcaaaattaagatatacttatgcatgaaagctt
gagaggcagagatggaggtaccttcaaagctgtgggcaatatatgtaaat
gtccttggggagaaaaccaattgacttgttctgaaaattaaaaaatatca
gagtggccaaagacaattatgccttccattttctaagatttttttctaaa
gcaggactctcccttcctagtgtaccctttagtttcctctcttaaacctg
aaaccatgggacaagtcatattaccaacccaggaacatatcaagtattgg
tatgcctcacatcagtcacatatattcatttaaagtaacaataatttata
aattatagaagctctggatctgtgaaaaatacgatcattcataaatccaa
tttttaaatatcctttcttcacgtagaagtagaaacactaacctagcaac
tagatctaagtctggacatttcttgtttgtgtcagttttgttagtgcaat
atctaacaatgtcctaattatagagaagaaatggcatcagaactaaactc
gttctgctttcaaaaccttacccctcactactcttctatgtctggatacc
actttgtgtaatggaaaatcatttttaaccgtgtccttggatttgtagtg
taattcttctcaatgctctgcatcacagtgaatgccccaatcctcttgtg
tactactgacttttaagcttcacattcaccaatctgatttttgctcttga
aaacactagtggttggtgactggccatgaactaaatatgagctagaacct
ccacagctgggaggcagctctgtgctctttatagccatctccagtactta
ttatgataacagaagctaacacagaacagaagcattttccgaacgagttt
aacagatgccagcactgatgtgcatctttgaggcaagtcctagagggctt
tggtttctgtatttgaatggcctccacaagtgtagaatttcaactct
gaattctctgttaagatctgtaccccattttaaaattgagttatttggtc
tggtagtgtctagcttcttgagttctttatatattttggatatcagctct
ctgtcagatgtggagttggtgaaaatctttttctattctgtgagctgctg
tttttccttttgactgtgtcctttgccttacagaagcttttcagtttcat
tacgtcccatttattaattgttgatcttactgcctgaacagttgatggaa
ttttttgtatgttgaaccatcactacatccctgtaatgaagcctaattga
tcacagtggatgatgcttttgatgtgttcttggattcagtttgggacttt
ttttttatggagtattttgcatcaatgttcataagggagattggtctgaa
attctctttctttcttgagtctttgtgtggtttaggtatcagggtaactg
tggcctcataaaatgaatttggtagtgtttattctgtttctattttgtgg
aataatttgaggcagatttgtcagctggaaaatggagtccagggggtaca
gtacagcttaagactattgggtgtgtttggagaggacttgaaaggcaagg
gcttgggggtgctgtcttacctgcctgtccctggtgctgacaggccacca
agaaatcaggcagagttgtgggctggaaaatggagcacagtggacatggg
ctgatttaacattttttcattgtattttatttttggcaggatagtatttg
tgcatatgtgtattgcattagcaaagtgtgccacgatgagtatagagatc
agaggatgccttgaagtatttgttttttccctttcatgtctgttctctgg
atcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68418768_68419832
seq2: B6Ng01-027K20.b_33_1079 (reverse)

seq1  AGAGTTTGAAAATTCTACACTTTGTTCGAGGCCATTCTAAATACAGAAAA  50
      ||||||   |||||||||||||   | |||||||||| ||||||||||| 
seq2  AGAGTT--GAAATTCTACACTT--GTGGAGGCCATTC-AAATACAGAAAC  45

seq1  CAAAATGACACTCTAAGGACTTGGCCTCCAAAGATGCCACATTCAGTGCT  100
      ||||    | |||| ||||||| |||| |||||||| |||| ||||||||
seq2  CAAA---GCCCTCT-AGGACTT-GCCT-CAAAGATG-CACA-TCAGTGCT  87

seq1  GGCATCTGTTTAAACTCCGTTTCGGAAAATTGCTTTCTGTTTCTGTGTTA  150
      |||||||| ||||||||   ||||||||| ||| ||||| ||||||||||
seq2  GGCATCTG-TTAAACTC--GTTCGGAAAA-TGC-TTCTG-TTCTGTGTTA  131

seq1  GCTTCCTGTTATCATAATAAGTACTGGAGATGGCTATAAAGAGCACAGGG  200
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTT-CTGTTATCATAATAAGTACTGGAGATGGCTATAAAGAGCACAGAG  180

seq1  CTGCCTCCCAGCTGTGGAGGTTCTAGCTCATAATTAGTTCATGGCCAGTC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCCTCCCAGCTGTGGAGGTTCTAGCTCATATTTAGTTCATGGCCAGTC  230

seq1  ACCAACCACTAGTGTTTTCAAGAGCAAAAATCAGATTGGTGAATGTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACTAGTGTTTTCAAGAGCAAAAATCAGATTGGTGAATGTGAAG  280

seq1  CTTAAAAGTCAGTAGTACACAAG-GGATTGGGGCATTCACTGTGATGCAG  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTAAAAGTCAGTAGTACACAAGAGGATTGGGGCATTCACTGTGATGCAG  330

seq1  AGCATTGAGAAGAATTACACTACAAATCCAAGGACACGGTT-AAAATGAT  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTGAGAAGAATTACACTACAAATCCAAGGACACGGTTAAAAATGAT  380

seq1  TTTCCATTACACAAAGTGGTATCCAGACATAGAAGAGTAGTGAGGGGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTACACAAAGTGGTATCCAGACATAGAAGAGTAGTGAGGGGTAA  430

seq1  GGTTTTGAAAGCAGAACGAGTTTAGTTCTGATGCCATTTCTTCTCTATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAAAGCAGAACGAGTTTAGTTCTGATGCCATTTCTTCTCTATAA  480

seq1  TTAGGACATTGTTAGATATTGCACTAACAAAACTGACACAAACAAGAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACATTGTTAGATATTGCACTAACAAAACTGACACAAACAAGAAAT  530

seq1  GTCCAGACTTAGATCTAGTTGCTAGGTTAGTGTTTCTACTTCTACGTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACTTAGATCTAGTTGCTAGGTTAGTGTTTCTACTTCTACGTGAA  580

seq1  GAAAGGATATTTAAAAATTGGATTTATGAATGATCGTATTTTTCACAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATATTTAAAAATTGGATTTATGAATGATCGTATTTTTCACAGAT  630

seq1  CCAGAGCTTCTATAATTTATAAATTATTGTTACTTTAAATGAATATATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTTCTATAATTTATAAATTATTGTTACTTTAAATGAATATATGT  680

seq1  GACTGATGTGAGGCATACCAATACTTGATATGTTCCTGGGTTGGTAATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGTGAGGCATACCAATACTTGATATGTTCCTGGGTTGGTAATAT  730

seq1  GACTTGTCCCATGGTTTCAGGTTTAAGAGAGGAAACTAAAGGGTACACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCCCATGGTTTCAGGTTTAAGAGAGGAAACTAAAGGGTACACTA  780

seq1  GGAAGGGAGAGTCCTGCTTTAGAAAAAAATCTTAGAAAATGGAAGGCATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGAGTCCTGCTTTAGAAAAAAATCTTAGAAAATGGAAGGCATA  830

seq1  ATTGTCTTTGGCCACTCTGATATTTTTTAATTTTCAGAACAAGTCAATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTGGCCACTCTGATATTTTTTAATTTTCAGAACAAGTCAATTG  880

seq1  GTTTTCTCCCCAAGGACATTTACATATATTGCCCACAGCTTTGAAGGTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCCCCAAGGACATTTACATATATTGCCCACAGCTTTGAAGGTAC  930

seq1  CTCCATCTCTGCCTCTCAAGCTTTCATGCATAAGTATATCTTAATTTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCTGCCTCTCAAGCTTTCATGCATAAGTATATCTTAATTTTGC  980

seq1  TAGACTCCAGCATAACACTTCCTTTTCTTAAAGGCTTATCATTTCTGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCAGCATAACACTTCCTTTTCTTAAAGGCTTATCATTTCTGCTT  1030

seq1  GGTCAAACAGAGAATTC  1065
      |||||||||||||||||
seq2  GGTCAAACAGAGAATTC  1047

seq1: chr5_68267296_68268137
seq2: B6Ng01-027K20.g_85_925

seq1  GATCTGTACCCCATTTTAAAATTGAGTTATTTGGTCTGGTAGTGTCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTACCCCATTTTAAAATTGAGTTATTTGGTCTGGTAGTGTCTAGC  50

seq1  TTCTTGAGTTCTTTATATATTTTGGATATCAGCTCTCTGTCAGATGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTCTTTATATATTTTGGATATCAGCTCTCTGTCAGATGTGGA  100

seq1  GTTGGTGAAAATCTTTTTCTATTCTGTGAGCTGCTGTTTTTCCTTTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAAAATCTTTTTCTATTCTGTGAGCTGCTGTTTTTCCTTTTGAC  150

seq1  TGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCATTACGTCCCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCATTACGTCCCATTTAT  200

seq1  TAATTGTTGATCTTACTGCCTGAACAGTTGATGGAATTTTTTGTATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGATCTTACTGCCTGAACAGTTGATGGAATTTTTTGTATGTTG  250

seq1  AACCATCACTACATCCCTGTAATGAAGCCTAATTGATCACAGTGGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCACTACATCCCTGTAATGAAGCCTAATTGATCACAGTGGATGAT  300

seq1  GCTTTTGATGTGTTCTTGGATTCAGTTTGGGACTTTTTTTTTATGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGATGTGTTCTTGGATTCAGTTTGGGACTTTTTTTTTATGGAGTA  350

seq1  TTTTGCATCAATGTTCATAAGGGAGATTGGTCTGAAATTCTCTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATCAATGTTCATAAGGGAGATTGGTCTGAAATTCTCTTTCTTTC  400

seq1  TTGAGTCTTTGTGTGGTTTAGGTATCAGGGTAACTGTGGCCTCATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTTTGTGTGGTTTAGGTATCAGGGTAACTGTGGCCTCATAAAAT  450

seq1  GAATTTGGTAGTGTTTATTCTGTTTCTATTTTGTGGAATAATTTGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGTAGTGTTTATTCTGTTTCTATTTTGTGGAATAATTTGAGGCA  500

seq1  GATTTGTCAGCTGGAAAATGGAGTCCAGGGGGTACAGTACAGCTTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCAGCTGGAAAATGGAGTCCAGGGGGTACAGTACAGCTTAAGAC  550

seq1  TATTGGGTGTGTTTGGAGAGGACTTGAAAGGCAAGGGCTT-GGGGTGCTG  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTGGGTGTGTTTGGAGAGGACTTGAAAGGCAAGGGCTTGGGGGTGCTG  600

seq1  TCTTACCTGCCTGTCCCTGGTGCTGACAGGCCACCAAGAAATCAGGCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGCCTGTCCCTGGTGCTGACAGGCCACCAAGAAATCAGGCAGA  650

seq1  GTTGTGGGCTGGAAAATGGAGCACAGTGGACAT-GGCTGATTTAACATTT  698
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTGTGGGCTGGAAAATGGAGCACAGTGGACATGGGCTGATTTAACATTT  700

seq1  TTTCATTGTA-TTTATTTTTGGCAGGATAGTATTTGTGCATATGTGTATT  747
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTATTTTATTTTTGGCAGGATAGTATTTGTGCATATGTGTATT  750

seq1  GCATAAGCACAAGTGTGCCACGATGAGTATAGAGATCAGAGGATGCCTTG  797
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGCA-AAGTGTGCCACGATGAGTATAGAGATCAGAGGATGCCTTG  799

seq1  AAGTATTTTGTTCTTTCCCTTCACTGTCTGTGTCTCTGGGATCGA  842
      ||||| |||||| ||||||||   ||||||| ||||| |||||||
seq2  AAGTA-TTTGTTTTTTCCCTTTCATGTCTGT-TCTCT-GGATCGA  841