BAC Information

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BAC

Clone NameB6Ng01-027M24
Chromosome5 (Build37)
Map Location 21,697,000 - 21,807,620
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M24.bB6Ng01-027M24.g
ACCDH858457DH858458
length159527
definitionDH858457|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M24, 5' end.DH858458|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,807,462 - 21,807,620)(21,697,000 - 21,697,532)
sequence
gaattctccatgaaagtaaggcacaaacatttattgtggttcagtattga
cggttcaatccatcgtgatatgatgtggaagctacggcagagcagaacag
ttcatgtcatgatgtccaggaagtgaagaagaagggaatataggaagagg
tgagggggg
caggcactcccgtaaattataatgggtgaagatcatcgtgagactggatg
acaagcctccagaacaaggggagtcagcagggttccagatcttaggactc
tgtcattttccctcccctcctctcctagcaacagacgcaattacacggag
cgcttcggaaagtggggttcaccactattttaaaaggcaggacatttttt
aaagggtgaaaattacacccaaaaatatctcaaggttatgaaaaccacca
agaaatcttcaagttccatgcttaagacccgcagacgccgtataattgga
agagctctttcccataattagcttaacctccttccttcatgaacgagcag
agatggggtcctgatcagacccttttatttcctcatctgatagagggaaa
acatcttatcattgggatttttaaaggattctcatcttcatctttgggac
ttgtatttattgactgaaatttaaaaagtgactcagtttgaagttaaggt
gtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21807462_21807620
seq2: B6Ng01-027M24.b_43_201 (reverse)

seq1  CCCCCCTCACCTCTTCCTATATTCCCTTCTTCTTCACTTCCTGGACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCACCTCTTCCTATATTCCCTTCTTCTTCACTTCCTGGACATCA  50

seq1  TGACATGAACTGTTCTGCTCTGCCGTAGCTTCCACATCATATCACGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAACTGTTCTGCTCTGCCGTAGCTTCCACATCATATCACGATGG  100

seq1  ATTGAACCGTCAATACTGAACCACAATAAATGTTTGTGCCTTACTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACCGTCAATACTGAACCACAATAAATGTTTGTGCCTTACTTTCAT  150

seq1  GGAGAATTC  159
      |||||||||
seq2  GGAGAATTC  159

seq1: chr5_21697000_21697532
seq2: B6Ng01-027M24.g_69_601

seq1  GAATTCCAGGCACTCCCGTAAATTATAATGGGTGAAGATCATCGTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCACTCCCGTAAATTATAATGGGTGAAGATCATCGTGAGAC  50

seq1  TGGATGACAAGCCTCCAGAACAAGGGGAGTCAGCAGGGTTCCAGATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACAAGCCTCCAGAACAAGGGGAGTCAGCAGGGTTCCAGATCTTA  100

seq1  GGACTCTGTCATTTTCCCTCCCCTCCTCTCCTAGCAACAGACGCAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTCATTTTCCCTCCCCTCCTCTCCTAGCAACAGACGCAATTAC  150

seq1  ACGGAGCGCTTCGGAAAGTGGGGTTCACCACTATTTTAAAAGGCAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCGCTTCGGAAAGTGGGGTTCACCACTATTTTAAAAGGCAGGACA  200

seq1  TTTTTTAAAGGGTGAAAATTACACCCAAAAATATCTCAAGGTTATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGGGTGAAAATTACACCCAAAAATATCTCAAGGTTATGAAAA  250

seq1  CCACCAAGAAATCTTCAAGTTCCATGCTTAAGACCCGCAGACGCCGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGAAATCTTCAAGTTCCATGCTTAAGACCCGCAGACGCCGTATA  300

seq1  ATTGGAAGAGCTCTTTCCCATAATTAGCTTAACCTCCTTCCTTCATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAGCTCTTTCCCATAATTAGCTTAACCTCCTTCCTTCATGAAC  350

seq1  GAGCAGAGATGGGGTCCTGATCAGACCCTTTTATTTCCTCATCTGATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGATGGGGTCCTGATCAGACCCTTTTATTTCCTCATCTGATAGA  400

seq1  GGGAAAACATCTTATCATTGGGATTTTTAAAGGATTCTCATCTTCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACATCTTATCATTGGGATTTTTAAAGGATTCTCATCTTCATCTT  450

seq1  TGGGACTTGTATTTATTGACTGAAATTTAAAAAGTGACTCAGTTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTGTATTTATTGACTGAAATTTAAAAAGTGACTCAGTTTGAAGT  500

seq1  TAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  533
      |||||||||||||||||||||||||||||||||
seq2  TAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  533